Bioinformatics Research Group @ IUB

Contact info:

Mailing list: si-bioresearch-l [at] indiana.edu (You need to be a member to post! See below if you wish to subscribe...)

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Meetings for Fall 2004

Time: Biweekly Tuesday 2:40 PM since September 28 2004

Place: Informatics 105

Meetings coming up:

Meetings so far...

• Tuesday, September 28 2004
  • Haixu Tang will present his work on "Computational problems in regulatory genomics."
• Tuesday, October 12 2004
  • Yogita Mantri led paper discussion.
    Paper: "CisModule: De novo discovery of cis-regulatory modules by hierarchical mixture modeling."
    Qing Zhou and Wing H. Wong. PNAS 101(33):12114-12119, 2004.
• Tuesday, October 26 2004
  • Rupali Patwardhan led paper discussion.
    Paper: "Predicting gene expression from sequence."
    Michael A. Beer and Saeed Tavazoie, Cell 117:185-198, 2004.
• Tuesday, November 9 2004
  • Sun Kim introduced special issue "Genes in Action" in science journal.
• Tuesday, November 23 2004
  • Sumit Middha led paper discussion.
    Paper: "CONREAL: Conserved Regulatory Elements Anchored Alignment Algorithm for Identification of Transcription Factor Binding Sites by Phylogenetic Footprinting."
    Eugene Berezikov, Victor Guryev, Ronald H.A. Plasterk and Edwin Cuppen. GR 14:170-178, 2004.
• Tuesday, December 7 2004
  • Predrag Radivojac led paper discussion.
    Paper: "Analysis of Ordered and Disordered Protein Complexes Reveals Structural Features Discriminating Between Stable and Unstable Monomers."
    Kannan Gunasekarana, Corresponding Author Contact Information, E-mail The Corresponding Author, Chung-Jung Tsaia and Ruth Nussinova. JMB 341(5):1327-1341, 2004.

Group Members:

• Dr. Alexander Bolshoy - Visiting Associate Professor, Informatics
• Dr. Mehmet Dalkilic - Assistant Professor, Informatics and Computer Science
• Dr. Sun Kim - Assistant Professor, Informatics, Computer Science, and CGB
• Dr. Predrag Radivojac - Visiting Assistant Professor, Informatics
• Dr. Haixu Tang - Assistant Professor, Informatics and Computer Science

• Dr. DoHoon Lee - Visiting Scholar, Informatics (Associsate Professor, Departement of Computer Engineering, Miryang National University)
• Dr. Gary W. Stuart - Visiting Scholar, CGB (Associate Professor, Department of Life Sciences, Indiana State University)

• Dr. JeongHyeon (JH) Choi - Postdoctoral, Informatics
• Kwangmin Choi - Research Programmer, Informatics

• Zhiping Wang - Doctoral student, Computer Science (and Bioinformatics)
• Mina Rho - Doctoral student, Computer Science

• Anita Dalwani - Master's student, Bioinformatics
• Yogita Mantri - Master's student, Bioinformatics
• Sumit Middha - Master's student, Bioinformatics
• Rupali Patwardhan - Master's student, Bioinformatics
• Hardik Sheth - Master's student, Bioinformatics
• Takuma Tsukahara - Master's student, Bioinformatics
• Lalitha Viswanath - Master's student, Bioinformatics

Previous Semesters

• Summer 2004
• Spring 2004
• Fall 2003
• Summer 2003

Useful Links

• MPI at IU
• HPC at IU
• Research Group's Manual Page
• Research Group's Examples Page
• Arvind's documents webapge