--- CLUSTER 1 ---
>gi|1572946|gb|AAC21681.1| long chain fatty acid coA ligase, putative [Haemophilus influenzae Rd]
>gi|1573360|gb|AAC22049.1| long chain fatty acid coenzyme A ligase (fadD) [Haemophilus influenzae Rd]
--- CLUSTER 2 --- SPLIT INTO 1453 1454 1455 1456 1457
>gi|1572947|gb|AAC21682.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1573586|gb|AAC22254.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786651|gb|AAC73549.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1786982|gb|AAC73853.1| putative phosphatase [Escherichia coli K12]
>gi|1787043|gb|AAC73909.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787067|gb|AAC73931.1| orf, hypothetical protein [Escherichia coli K12]
>gi|2367265|gb|AAC76720.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790260|gb|AAC76829.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 3 --- SPLIT INTO 1458 1459
>gi|1573313|gb|AAC22004.1| ferredoxin-type protein (napF) [Haemophilus influenzae Rd]
>gi|1574077|gb|AAC22702.1| ferredoxin-type protein (napF) [Haemophilus influenzae Rd]
>gi|1788536|gb|AAC75268.1| ferredoxin-type protein: electron transfer [Escherichia coli K12]
--- CLUSTER 4 ---
>gi|1574077|gb|AAC22702.1| ferredoxin-type protein (napF) [Haemophilus influenzae Rd]
>gi|1788833|gb|AAC75541.1| hydrogenase 4 Fe-S subunit [Escherichia coli K12]
--- CLUSTER 5 --- SPLIT INTO 1460 1461
>gi|1788617|gb|AAC75341.1| NADH dehydrogenase I chain I [Escherichia coli K12]
>gi|1788833|gb|AAC75541.1| hydrogenase 4 Fe-S subunit [Escherichia coli K12]
>gi|1789075|gb|AAC75762.1| probable iron-sulfur protein of hydrogenase 3 (part of FHL complex) [Escherichia coli K12]
--- CLUSTER 6 ---
>gi|1573353|gb|AAC22041.1| outer membrane integrity protein (tolA) [Haemophilus influenzae Rd]
>gi|1786960|gb|AAC73833.1| membrane spanning protein, required for outer membrane integrity [Escherichia coli K12]
--- CLUSTER 7 --- SPLIT INTO 1462 1463
>gi|1572960|gb|AAC21694.1| GTP-binding membrane protein (lepA) [Haemophilus influenzae Rd]
>gi|1573560|gb|AAC22236.1| elongation factor Tu (tufA) [Haemophilus influenzae Rd]
>gi|1573567|gb|AAC22237.1| elongation factor G (fusA) [Haemophilus influenzae Rd]
>gi|1573634|gb|AAC22292.1| elongation factor Tu (tufB) [Haemophilus influenzae Rd]
>gi|1573710|gb|AAC22366.1| selenocysteine-specific elongation factor (selB) [Haemophilus influenzae Rd]
>gi|1573881|gb|AAC22523.1| GTP-binding protein [Haemophilus influenzae Rd]
>gi|1574742|gb|AAC22933.1| translation initiation factor 2 (infB) [Haemophilus influenzae Rd]
>gi|1574592|gb|AAC23380.1| peptide chain release factor 3 (prfC) [Haemophilus influenzae Rd]
>gi|1786960|gb|AAC73833.1| membrane spanning protein, required for outer membrane integrity [Escherichia coli K12]
>gi|1788922|gb|AAC75622.1| GTP-binding elongation factor, may be inner membrane protein [Escherichia coli K12]
>gi|1789108|gb|AAC75793.1| ATP-sulfurylase (ATP:sulfate adenylyltransferase), subunit 1, probably a GTPase [Escherichia coli K12]
>gi|1789559|gb|AAC76202.1| protein chain initiation factor IF-2 [Escherichia coli K12]
>gi|1789737|gb|AAC76364.1| protein chain elongation factor EF-Tu (duplicate of tufB) [Escherichia coli K12]
>gi|1789738|gb|AAC76365.1| GTP-binding protein chain elongation factor EF-G [Escherichia coli K12]
>gi|2367247|gb|AAC76614.1| selenocysteinyl-tRNA-specific translation factor [Escherichia coli K12]
>gi|1790302|gb|AAC76868.1| putative GTP-binding factor [Escherichia coli K12]
>gi|1790412|gb|AAC76954.1| protein chain elongation factor EF-Tu (duplicate of tufA) [Escherichia coli K12]
>gi|1790835|gb|AAC77328.1| peptide chain release factor RF-3 [Escherichia coli K12]
--- CLUSTER 8 --- SPLIT INTO 1464 1465
>gi|1787403|gb|AAC74241.1| putative tail fiber protein [Escherichia coli K12]
>gi|1787636|gb|AAC74454.1| putative membrane protein [Escherichia coli K12]
>gi|1787829|gb|AAC74620.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 9 ---
>gi|1786960|gb|AAC73833.1| membrane spanning protein, required for outer membrane integrity [Escherichia coli K12]
>gi|1787636|gb|AAC74454.1| putative membrane protein [Escherichia coli K12]
--- CLUSTER 10 --- SPLIT INTO 1466 1467
>gi|1574537|gb|AAC23331.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786960|gb|AAC73833.1| membrane spanning protein, required for outer membrane integrity [Escherichia coli K12]
>gi|1787916|gb|AAC74701.1| putative membrane protein [Escherichia coli K12]
--- CLUSTER 11 ---
>gi|1787916|gb|AAC74701.1| putative membrane protein [Escherichia coli K12]
>gi|1789075|gb|AAC75762.1| probable iron-sulfur protein of hydrogenase 3 (part of FHL complex) [Escherichia coli K12]
--- CLUSTER 12 ---
>gi|1787963|gb|AAC74744.1| putative oxidoreductase, Fe-S subunit [Escherichia coli K12]
>gi|1789075|gb|AAC75762.1| probable iron-sulfur protein of hydrogenase 3 (part of FHL complex) [Escherichia coli K12]
--- CLUSTER 13 --- SPLIT INTO 1468 1469 1470
>gi|1572950|gb|AAC21685.1| formate dehydrogenase, beta subunit (fdxH) [Haemophilus influenzae Rd]
>gi|1574080|gb|AAC22705.1| anaerobic dimethyl sulfoxide reductase, chain B (dmsB) [Haemophilus influenzae Rd]
>gi|1574621|gb|AAC22725.1| nitrite reductase, Fe-S protein (nrfC) [Haemophilus influenzae Rd]
>gi|1787122|gb|AAC73981.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli K12]
>gi|1787478|gb|AAC74309.1| nitrate reductase 1, beta subunit [Escherichia coli K12]
>gi|1787740|gb|AAC74549.1| cryptic nitrate reductase 2, beta subunit [Escherichia coli K12]
>gi|1787749|gb|AAD13439.1| formate dehydrogenase-N, nitrate-inducible, iron-sulfur beta subunit [Escherichia coli K12]
>gi|1787872|gb|AAC74661.1| putative oxidoreductase, Fe-S subunit [Escherichia coli K12]
>gi|1787960|gb|AAC74741.1| putative oxidoreductase, Fe-S subunit [Escherichia coli K12]
>gi|1787963|gb|AAC74744.1| putative oxidoreductase, Fe-S subunit [Escherichia coli K12]
>gi|1788468|gb|AAC75207.1| putative oxidoreductase [Escherichia coli K12]
>gi|1788811|gb|AAC75521.1| putative oxidoreductase, Fe-S subunit [Escherichia coli K12]
>gi|1788826|gb|AAC75534.1| hydrogenase 4 Fe-S subunit [Escherichia coli K12]
>gi|1789067|gb|AAC75755.1| involved in electron transport from formate to hydrogen, Fe-S centers [Escherichia coli K12]
>gi|1789079|gb|AAC75766.1| probable small subunit of hydrogenase-3, iron-sulfur protein (part of formate hydrogenlyase (FHL) complex) [Escherichia coli K12]
>gi|1789243|gb|AAC75916.1| putative oxidoreductase, Fe-S subunit [Escherichia coli K12]
>gi|1789252|gb|AAC75924.1| putative oxidoreductase, Fe-S subunit [Escherichia coli K12]
>gi|1789253|gb|AAC75925.1| putative oxidoreductase, Fe-S subunit [Escherichia coli K12]
>gi|1789370|gb|AAC76032.1| hydrogenase-2 small subunit [Escherichia coli K12]
>gi|1789606|gb|AAC76245.1| glutamate synthase, small subunit [Escherichia coli K12]
>gi|2367245|gb|AAC76597.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790326|gb|AAD13455.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli K12]
>gi|2367345|gb|AAC77042.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli K12]
--- CLUSTER 14 --- SPLIT INTO 1471 1472
>gi|1572957|gb|AAC21691.1| GTP-binding protein (era) [Haemophilus influenzae Rd]
>gi|1573089|gb|AAC21807.1| GTP-binding protein [Haemophilus influenzae Rd]
>gi|1574033|gb|AAC22664.1| thiophene and furan oxidation protein (thdF) [Haemophilus influenzae Rd]
>gi|1788858|gb|AAC75564.1| putative GTP-binding factor [Escherichia coli K12]
>gi|1788919|gb|AAC75619.1| GTP-binding protein [Escherichia coli K12]
>gi|1789813|gb|AAC76434.1| ferrous iron transport protein B [Escherichia coli K12]
>gi|2367268|gb|AAC76729.1| GTP-binding protein in thiophene and furan oxidation [Escherichia coli K12]
--- CLUSTER 15 --- SPLIT INTO 1473 1474 1475
>gi|1572961|gb|AAC21695.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1573136|gb|AAC21849.1| formate acetyltransferase (pfl) [Haemophilus influenzae Rd]
>gi|1787044|gb|AAC73910.1| putative formate acetyltransferase [Escherichia coli K12]
>gi|1787131|gb|AAC73989.1| formate acetyltransferase 1 [Escherichia coli K12]
>gi|1788933|gb|AAC75632.1| putative formate acetyltransferase [Escherichia coli K12]
>gi|1789502|gb|AAC76149.1| probable formate acetyltransferase 3 [Escherichia coli K12]
>gi|1790388|gb|AAC76933.1| formate acetyltransferase 2 [Escherichia coli K12]
--- CLUSTER 16 --- SPLIT INTO 1476 1477 1478
>gi|1572974|gb|AAC21707.1| penicillin-binding protein 5 (dacA) [Haemophilus influenzae Rd]
>gi|1573331|gb|AAC22022.1| penicillin-binding protein 7, putative [Haemophilus influenzae Rd]
>gi|1786851|gb|AAC73733.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 [Escherichia coli K12]
>gi|1787062|gb|AAC73926.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6 [Escherichia coli K12]
>gi|1788320|gb|AAC75071.1| penicillin binding protein 6b [Escherichia coli K12]
>gi|1788455|gb|AAC75195.1| penicillin-binding protein 7 [Escherichia coli K12]
--- CLUSTER 17 ---
>gi|1572976|gb|AAC21709.1| rod shape-determining protein (rodA) [Haemophilus influenzae Rd]
>gi|1574692|gb|AAC22792.1| cell division protein (ftsW) [Haemophilus influenzae Rd]
>gi|1786277|gb|AAC73200.1| cell division; membrane protein involved in shape determination [Escherichia coli K12]
>gi|1786853|gb|AAC73735.1| rod shape-determining membrane protein; sensitivity to radiation and drugs [Escherichia coli K12]
--- CLUSTER 18 ---
>gi|1572977|gb|AAC21710.1| penicillin-binding protein 2 (pbp2) [Haemophilus influenzae Rd]
>gi|1574687|gb|AAC22787.1| penicillin-binding protein 3 (ftsI) [Haemophilus influenzae Rd]
>gi|1786272|gb|AAC73195.1| septum formation; penicillin-binding protein 3; peptidoglycan synthetase [Escherichia coli K12]
>gi|1786854|gb|AAC73736.1| cell elongation, e phase; peptidoglycan synthetase; penicillin-binding protein 2 [Escherichia coli K12]
--- CLUSTER 19 ---
>gi|1787010|gb|AAC73879.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787011|gb|AAC73880.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789897|gb|AAC76510.1| putative transporter [Escherichia coli K12]
>gi|2367231|gb|AAC76511.1| putative ATP-binding component of a transport system, fragment 1 [Escherichia coli K12]
--- CLUSTER 20 --- SPLIT INTO 1479 1480 1481 1482 1483
>gi|1572982|gb|AAC21714.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1573008|gb|AAC21738.1| ABC transporter, ATP-binding protein (msbA) [Haemophilus influenzae Rd]
>gi|1573050|gb|AAC21775.1| iron(III) ABC transporter, ATP-binding protein (hitC) [Haemophilus influenzae Rd]
>gi|1573081|gb|AAC21800.1| ferric ABC transporter, ATP-binding protein (afuC) [Haemophilus influenzae Rd]
>gi|1573215|gb|AAC21915.1| excinuclease ABC, subunit A (uvrA) [Haemophilus influenzae Rd]
>gi|1573323|gb|AAC22014.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1573329|gb|AAC22020.1| iron (chelated) transporter, ATP-binding protein (yfeB) [Haemophilus influenzae Rd]
>gi|1573381|gb|AAC22067.1| ABC transporter, ATP-binding protein (yebM) [Haemophilus influenzae Rd]
>gi|1573483|gb|AAC22160.1| D-ribose ABC transporter, ATP-binding protein (rbsA) [Haemophilus influenzae Rd]
>gi|1573615|gb|AAC22280.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1573657|gb|AAC22317.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1573662|gb|AAC22320.1| ATP-binding transport protein (cydD) [Haemophilus influenzae Rd]
>gi|1573663|gb|AAC22321.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1573777|gb|AAC22427.1| cell division ATP-binding protein (ftsE) [Haemophilus influenzae Rd]
>gi|1573836|gb|AAC22482.1| galactoside ABC transporter, ATP-binding protein (mglA) [Haemophilus influenzae Rd]
>gi|1574050|gb|AAC22680.1| thiamin ABC transporter, ATP-binding protein, putative [Haemophilus influenzae Rd]
>gi|1574084|gb|AAC22709.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1574632|gb|AAC22734.1| amino acid ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1574641|gb|AAC22743.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1574644|gb|AAC22746.1| heme exporter ATP-binding protein A (ccmA) [Haemophilus influenzae Rd]
>gi|1574664|gb|AAC22764.1| D-xylose ABC transporter, ATP-binding protein (xylG) [Haemophilus influenzae Rd]
>gi|1574675|gb|AAC22774.1| oligopeptide ABC transporter, ATP-binding protein (oppF) [Haemophilus influenzae Rd]
>gi|1574676|gb|AAC22775.1| oligopeptide ABC transporter, ATP-binding protein (oppD) [Haemophilus influenzae Rd]
>gi|1574704|gb|AAC22803.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1574713|gb|AAC22811.1| transport ATP-binding protein (cydC) [Haemophilus influenzae Rd]
>gi|1574714|gb|AAC22812.1| ATP-binding protein protein (cydD) [Haemophilus influenzae Rd]
>gi|1574105|gb|AAC22831.1| arginine ABC transporter, ATP-binding protein (artP) [Haemophilus influenzae Rd]
>gi|1574111|gb|AAC22837.1| dipeptide ABC transporter, ATP-binding protein (dppF) [Haemophilus influenzae Rd]
>gi|1574112|gb|AAC22838.1| dipeptide ABC transporter, ATP-binding protein (dppD) [Haemophilus influenzae Rd]
>gi|1574184|gb|AAC22902.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1574727|gb|AAC22920.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1574757|gb|AAC22945.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1574802|gb|AAC22987.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1574806|gb|AAC22991.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Haemophilus influenzae Rd]
>gi|1574308|gb|AAC23116.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1574311|gb|AAC23118.1| iron chelatin ABC transporter, ATP-binding protein, putative [Haemophilus influenzae Rd]
>gi|1574315|gb|AAC23122.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1574394|gb|AAC23199.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1574464|gb|AAC23266.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1574489|gb|AAC23288.1| peptide ABC transporter, ATP-binding protein (sapD) [Haemophilus influenzae Rd]
>gi|1574490|gb|AAC23289.1| peptide ABC transporter, ATP-binding protein (sapF) [Haemophilus influenzae Rd]
>gi|1574544|gb|AAC23337.1| molybdenum ABC transporter, ATP-binding protein (modC) [Haemophilus influenzae Rd]
>gi|1786253|gb|AAC73177.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1786319|gb|AAC73238.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1786345|gb|AAC73262.1| ATP-binding component of hydroxymate-dependent iron transport [Escherichia coli K12]
>gi|1786398|gb|AAC73310.1| ATP-binding component of a transporter [Escherichia coli K12]
>gi|1786457|gb|AAC73365.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1786563|gb|AAC73469.1| taurine ATP-binding component of a transport system [Escherichia coli K12]
>gi|1786653|gb|AAC73551.1| ATP-binding component of a transport system [Escherichia coli K12]
>gi|1786654|gb|AAC73552.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1786698|gb|AAC73592.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1786703|gb|AAC73597.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1786803|gb|AAC73689.1| ATP-binding component of ferric enterobactin transport [Escherichia coli K12]
>gi|1786872|gb|AAC73753.1| ATP-binding protein of glutamate/aspartate transport system [Escherichia coli K12]
>gi|1786975|gb|AAC73847.1| ATP-binding component of molybdate transport system [Escherichia coli K12]
>gi|1786981|gb|AAC73852.1| ATP-binding component of molybdate transport [Escherichia coli K12]
>gi|1787012|gb|AAC73881.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787029|gb|AAC73896.1| ATP-binding component of glutamine high-affinity transport system [Escherichia coli K12]
>gi|1787041|gb|AAC73907.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787051|gb|AAC73916.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787079|gb|AAC73942.1| ATP-binding component of putrescine transport system [Escherichia coli K12]
>gi|1787089|gb|AAC73951.1| ATP-binding component of 3rd arginine transport system [Escherichia coli K12]
>gi|1787105|gb|AAC73966.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787112|gb|AAC73972.1| ATP-binding component of cytochrome-related transport [Escherichia coli K12]
>gi|1787113|gb|AAC73973.1| ATP-binding component of cytochrome-related transport, Zn sensitive [Escherichia coli K12]
>gi|1787143|gb|AAC74000.1| ATP-binding transport protein; multicopy suppressor of htrB [Escherichia coli K12]
>gi|1787164|gb|AAC74019.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787182|gb|AAC74035.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787361|gb|AAC74201.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787370|gb|AAC74210.1| ATP-binding component of spermidine/putrescine transport [Escherichia coli K12]
>gi|1787499|gb|AAC74328.1| homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system [Escherichia coli K12]
>gi|1787500|gb|AAC74329.1| homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system [Escherichia coli K12]
>gi|1787547|gb|AAC74372.1| putative ATP-binding protein of peptide transport system [Escherichia coli K12]
>gi|1787548|gb|AAC74373.1| putative ATP-binding protein of peptide transport system [Escherichia coli K12]
>gi|1787577|gb|AAC74400.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787712|gb|AAC74523.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787758|gb|AAC74556.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787759|gb|AAC74557.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787772|gb|AAC74569.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787792|gb|AAC74586.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787972|gb|AAC74752.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1788002|gb|AAC74779.1| ATP-binding component of vitamin B12 transport system [Escherichia coli K12]
>gi|1788053|gb|AAC74826.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1788165|gb|AAC74928.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1788210|gb|AAC74970.1| ATP-binding component of high-affinity L-arabinose transport system [Escherichia coli K12]
>gi|1788225|gb|AAC74984.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1788450|gb|AAC75190.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1788472|gb|AAC75210.1| ATP-binding component of methyl-galactoside transport and galactose taxis [Escherichia coli K12]
>gi|1788506|gb|AAC75241.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1788529|gb|AAC75261.1| ATP binding protein of heme exporter A [Escherichia coli K12]
>gi|1788540|gb|AAC75271.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1788644|gb|AAC75366.1| ATP-binding component of histidine transport [Escherichia coli K12]
>gi|1788761|gb|AAC75475.1| ATP-binding component of sulfate permease A protein; chromate resistance [Escherichia coli K12]
>gi|1788897|gb|AAC75600.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1789032|gb|AAC75724.1| ATP-binding component of transport system for glycine, betaine and proline [Escherichia coli K12]
>gi|1789586|gb|AAC76227.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1789593|gb|AAC76233.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1789672|gb|AAC76303.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1789751|gb|AAC76377.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1789859|gb|AAC76475.1| ATP-binding component of sn-glycerol 3-phosphate transport system [Escherichia coli K12]
>gi|1789863|gb|AAC76479.1| ATP-binding component of leucine transport [Escherichia coli K12]
>gi|1789864|gb|AAC76480.1| ATP-binding component of high-affinity branched-chain amino acid transport system [Escherichia coli K12]
>gi|1789873|gb|AAC76488.1| ATP-binding component of a membrane-associated complex involved in cell division [Escherichia coli K12]
>gi|1789890|gb|AAC76504.1| ATP-binding protein of nickel transport system [Escherichia coli K12]
>gi|1789891|gb|AAC76505.1| ATP-binding protein of nickel transport system [Escherichia coli K12]
>gi|2367231|gb|AAC76511.1| putative ATP-binding component of a transport system, fragment 1 [Escherichia coli K12]
>gi|1789962|gb|AAC76565.1| putative ATP-binding component of dipeptide transport system [Escherichia coli K12]
>gi|1789963|gb|AAC76566.1| putative ATP-binding component of dipeptide transport system [Escherichia coli K12]
>gi|1789991|gb|AAC76591.1| putative ATP-binding protein of xylose transport system [Escherichia coli K12]
>gi|1790162|gb|AAC76748.1| ATP-binding component of high-affinity phosphate-specific transport system [Escherichia coli K12]
>gi|1790190|gb|AAC76772.1| ATP-binding component of D-ribose high-affinity transport system [Escherichia coli K12]
>gi|1790467|gb|AAC77005.1| ATP-binding component of transport system for maltose [Escherichia coli K12]
>gi|2367343|gb|AAC77028.1| excision nuclease subunit A [Escherichia coli K12]
>gi|1790525|gb|AAC77048.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1790534|gb|AAC77057.1| ATP-binding component of phosphonate transport [Escherichia coli K12]
>gi|1790535|gb|AAC77058.1| ATP-binding component of phosphonate transport [Escherichia coli K12]
>gi|1790544|gb|AAC77067.1| ATP-binding component of phosphonate transport [Escherichia coli K12]
>gi|1790675|gb|AAC77185.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1790676|gb|AAC77186.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1790739|gb|AAC77243.1| ATP-binding component of citrate-dependent iron(III) transport protein [Escherichia coli K12]
>gi|2367384|gb|AAC77344.1| putative ATP-binding component of a transport system [Escherichia coli K12]
--- CLUSTER 21 ---
>gi|1572982|gb|AAC21714.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1786575|gb|AAC73480.1| sensitivity to microcin B17, possibly envelop protein [Escherichia coli K12]
--- CLUSTER 22 --- SPLIT INTO 1484 1485 1486
>gi|1572988|gb|AAC21720.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1573131|gb|AAC21845.1| sfhB protein (sfhB) [Haemophilus influenzae Rd]
>gi|1573385|gb|AAC22071.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1573611|gb|AAC22276.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1574274|gb|AAC23084.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786244|gb|AAC73169.1| pseudouridylate synthase [Escherichia coli K12]
>gi|1787327|gb|AAC74170.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788946|gb|AAC75643.1| suppressor of ftsH mutation [Escherichia coli K12]
>gi|1789155|gb|AAC75833.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 23 ---
>gi|1572995|gb|AAC21726.1| oxidoreductase [Haemophilus influenzae Rd]
>gi|1573112|gb|AAC21824.1| 3-ketoacyl-acyl carrier protein reductase (fabG) [Haemophilus influenzae Rd]
>gi|1574268|gb|AAC23077.1| short chain dehydrogenase/reductase [Haemophilus influenzae Rd]
>gi|1574591|gb|AAC23379.1| enoyl-(acyl-carrier-protein) reductase (fabI) [Haemophilus influenzae Rd]
>gi|1786701|gb|AAC73595.1| putative oxidoreductase [Escherichia coli K12]
>gi|1786812|gb|AAC73697.1| 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, enterochelin biosynthesis [Escherichia coli K12]
>gi|1787335|gb|AAC74177.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Escherichia coli K12]
>gi|1787526|gb|AAC74353.1| putative oxidoreductase [Escherichia coli K12]
>gi|1787545|gb|AAC74370.1| enoyl-[acyl-carrier-protein] reductase (NADH) [Escherichia coli K12]
>gi|1787820|gb|AAC74612.1| putative oxidoreductase [Escherichia coli K12]
>gi|1787891|gb|AAC74678.1| putative oxidoreductase [Escherichia coli K12]
>gi|1787905|gb|AAC74691.1| NAD-dependent 7alpha-hydroxysteroid dehydrogenase, dehydroxylation of bile acids [Escherichia coli K12]
>gi|1788459|gb|AAC75198.1| putative oxidoreductase [Escherichia coli K12]
>gi|1788766|gb|AAC75479.1| putative oxidoreductase [Escherichia coli K12]
>gi|1788891|gb|AAC75594.1| 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase [Escherichia coli K12]
>gi|1789057|gb|AAC75747.1| glucitol (sorbitol)-6-phosphate dehydrogenase [Escherichia coli K12]
>gi|1789135|gb|AAC75816.1| putative oxidoreductase [Escherichia coli K12]
>gi|1789208|gb|AAC75881.1| 2-deoxy-D-gluconate 3-dehydrogenase [Escherichia coli K12]
>gi|2367175|gb|AAC75940.1| putative oxidoreductase [Escherichia coli K12]
>gi|1789378|gb|AAC76039.1| putative oxidoreductase [Escherichia coli K12]
>gi|2367365|gb|AAC77206.1| putative oxidoreductase [Escherichia coli K12]
>gi|1790717|gb|AAC77223.1| 5-keto-D-gluconate 5-reductase [Escherichia coli K12]
--- CLUSTER 24 ---
>gi|1572998|gb|AAC21729.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1574062|gb|AAC22690.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1790002|gb|AAC76601.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 25 ---
>gi|1572998|gb|AAC21729.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1573103|gb|AAC21819.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
--- CLUSTER 26 ---
>gi|1572997|gb|AAC21728.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1573103|gb|AAC21819.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1574061|gb|AAC22689.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1790003|gb|AAC76602.1| putative membrane protein [Escherichia coli K12]
--- CLUSTER 27 ---
>gi|1572999|gb|AAC21730.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1573102|gb|AAC21818.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1574060|gb|AAC22688.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790004|gb|AAC76603.1| putative solute-binding transport protein [Escherichia coli K12]
--- CLUSTER 28 ---
>gi|1788073|gb|AAC74844.1| putative oxidoreductase [Escherichia coli K12]
>gi|1790485|gb|AAC77021.1| quinone oxidoreductase [Escherichia coli K12]
--- CLUSTER 29 ---
>gi|1787721|gb|AAC74531.1| putative oxidoreductase [Escherichia coli K12]
>gi|1789651|gb|AAC76285.1| putative dehydrogenase [Escherichia coli K12]
--- CLUSTER 30 ---
>gi|1787572|gb|AAC74395.1| putative oxidoreductase [Escherichia coli K12]
>gi|1787721|gb|AAC74531.1| putative oxidoreductase [Escherichia coli K12]
--- CLUSTER 31 --- SPLIT INTO 1487 1488
>gi|1573000|gb|AAC21731.1| zinc-type alcohol dehydrogenase [Haemophilus influenzae Rd]
>gi|1573141|gb|AAC21854.1| alcohol dehydrogenase, class III (adhC) [Haemophilus influenzae Rd]
>gi|1786518|gb|AAC73428.1| putative oxidoreductase [Escherichia coli K12]
>gi|1786552|gb|AAC73459.1| alcohol dehydrogenase class III; formaldehyde dehydrogenase, glutathione-dependent [Escherichia coli K12]
>gi|1786825|gb|AAC73709.1| putative oxidoreductase [Escherichia coli K12]
>gi|1787572|gb|AAC74395.1| putative oxidoreductase [Escherichia coli K12]
>gi|1787753|gb|AAC74551.1| alcohol dehydrogenase [Escherichia coli K12]
>gi|1787863|gb|AAC74652.1| starvation sensing protein [Escherichia coli K12]
>gi|1788073|gb|AAC74844.1| putative oxidoreductase [Escherichia coli K12]
>gi|1788075|gb|AAC74846.1| putative oxidoreductase [Escherichia coli K12]
>gi|1788407|gb|AAC75152.1| galactitol-1-phosphate dehydrogenase [Escherichia coli K12]
>gi|1788895|gb|AAC75598.1| putative oxidoreductase [Escherichia coli K12]
>gi|1790045|gb|AAC76640.1| threonine dehydrogenase [Escherichia coli K12]
>gi|1790718|gb|AAC77224.1| L-idonate dehydrogenase [Escherichia coli K12]
>gi|1790720|gb|AAC77226.1| putative oxidoreductase [Escherichia coli K12]
>gi|1790819|gb|AAC77314.1| putative oxidoreductase [Escherichia coli K12]
--- CLUSTER 32 ---
>gi|1573011|gb|AAC21741.1| poly(A) polymerase (pcnB) [Haemophilus influenzae Rd]
>gi|1574448|gb|AAC23250.1| tRNA nucleotidyltransferase (cca) [Haemophilus influenzae Rd]
>gi|1786336|gb|AAC73254.1| poly(A) polymerase I [Escherichia coli K12]
>gi|1789436|gb|AAC76092.1| tRNA nucleotidyl transferase [Escherichia coli K12]
--- CLUSTER 33 ---
>gi|1573428|gb|AAC22112.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790275|gb|AAC76844.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 34 --- SPLIT INTO 1489 1490
>gi|1573029|gb|AAC21756.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1573428|gb|AAC22112.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1574514|gb|AAC23310.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787342|gb|AAC74184.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790274|gb|AAC76843.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790838|gb|AAC77331.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 35 --- SPLIT INTO 1491 1492 1493
>gi|1573036|gb|AAC21763.1| D-lactate dehydrogenase, fermentative (ldhA) [Haemophilus influenzae Rd]
>gi|1573443|gb|AAC22124.1| D-3-phosphoglycerate dehydrogenase (serA) [Haemophilus influenzae Rd]
>gi|1574400|gb|AAC23205.1| 2-hydroxyacid dehydrogenase [Haemophilus influenzae Rd]
>gi|1787270|gb|AAC74117.1| putative dehydrogenase [Escherichia coli K12]
>gi|1787645|gb|AAC74462.1| fermentative D-lactate dehydrogenase, NAD-dependent [Escherichia coli K12]
>gi|1788660|gb|AAC75380.1| erythronate-4-phosphate dehyrogenase [Escherichia coli K12]
>gi|1789279|gb|AAC75950.1| D-3-phosphoglycerate dehydrogenase [Escherichia coli K12]
>gi|2367243|gb|AAC76577.1| putative dehydrogenase [Escherichia coli K12]
--- CLUSTER 36 ---
>gi|1573037|gb|AAC21764.1| cystathionine gamma-synthase (metB) [Haemophilus influenzae Rd]
>gi|1573077|gb|AAC21796.1| cystathionine beta-lyase (metC) [Haemophilus influenzae Rd]
>gi|1789383|gb|AAC76044.1| cystathionine beta-lyase (beta-cystathionase) [Escherichia coli K12]
>gi|1790375|gb|AAC76921.1| cystathionine gamma-synthase [Escherichia coli K12]
--- CLUSTER 37 ---
>gi|1574668|gb|AAC22768.1| ADP-L-glycero-D-mannoheptose-6-epimerase (rfaD) [Haemophilus influenzae Rd]
>gi|1790049|gb|AAC76643.1| ADP-L-glycero-D-mannoheptose-6-epimerase [Escherichia coli K12]
--- CLUSTER 38 ---
>gi|1574046|gb|AAC22675.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790049|gb|AAC76643.1| ADP-L-glycero-D-mannoheptose-6-epimerase [Escherichia coli K12]
--- CLUSTER 39 ---
>gi|1573321|gb|AAC22012.1| UDP-glucose 4-epimerase (galE) [Haemophilus influenzae Rd]
>gi|1573891|gb|AAC22531.1| DTDP-glucose 4,6-dehydratase (rffG) [Haemophilus influenzae Rd]
>gi|1786974|gb|AAC73846.1| UDP-galactose-4-epimerase [Escherichia coli K12]
>gi|1788353|gb|AAC75102.1| dTDP-glucose 4,6 dehydratase [Escherichia coli K12]
>gi|1788366|gb|AAC75114.1| GDP-D-mannose dehydratase [Escherichia coli K12]
>gi|1790223|gb|AAC76793.1| dTDP-glucose 4,6-dehydratase [Escherichia coli K12]
--- CLUSTER 40 ---
>gi|1574046|gb|AAC22675.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786974|gb|AAC73846.1| UDP-galactose-4-epimerase [Escherichia coli K12]
--- CLUSTER 41 ---
>gi|1573046|gb|AAC21779.1| H. influenzae predicted coding region HI0094 [Haemophilus influenzae Rd]
>gi|1574046|gb|AAC22675.1| conserved hypothetical protein [Haemophilus influenzae Rd]
--- CLUSTER 42 ---
>gi|1573046|gb|AAC21779.1| H. influenzae predicted coding region HI0094 [Haemophilus influenzae Rd]
>gi|1574047|gb|AAC22676.1| gluconate permease (gntP) [Haemophilus influenzae Rd]
--- CLUSTER 43 --- SPLIT INTO 1494 1495 1496
>gi|1573043|gb|AAC21770.1| H. influenzae predicted coding region HI0092 [Haemophilus influenzae Rd]
>gi|1574047|gb|AAC22676.1| gluconate permease (gntP) [Haemophilus influenzae Rd]
>gi|1788707|gb|AAC75424.1| transport system permease (serine?) [Escherichia coli K12]
>gi|1789097|gb|AAC75782.1| putative transport protein [Escherichia coli K12]
>gi|1789820|gb|AAC76440.1| high-affinity transport of gluconate / gluconate permease [Escherichia coli K12]
>gi|1789843|gb|AAC76460.1| low-affinity gluconate transport permease protein, fragment 2 [Escherichia coli K12]
>gi|1789844|gb|AAC76461.1| low-affinity gluconate transport permease protein, interrupted [Escherichia coli K12]
>gi|1790716|gb|AAC77222.1| L-idonate transporter [Escherichia coli K12]
>gi|2367370|gb|AAC77252.1| putative transport system permease [Escherichia coli K12]
>gi|1790776|gb|AAC77277.1| gluconate transport system permease 3 [Escherichia coli K12]
--- CLUSTER 44 ---
>gi|1787078|gb|AAC73941.1| periplasmic putrescine-binding protein; permease protein [Escherichia coli K12]
>gi|1787711|gb|AAC74522.1| putative transport protein [Escherichia coli K12]
--- CLUSTER 45 ---
>gi|1573085|gb|AAC21803.1| afuA protein [Haemophilus influenzae Rd]
>gi|1573475|gb|AAC22155.1| spermidine/putrescine ABC transporter, periplasmic-binding protein (potD) [Haemophilus influenzae Rd]
>gi|1574803|gb|AAC22988.1| spermidine/putrescine ABC transporter, periplasmic-binding protein (potD) [Haemophilus influenzae Rd]
>gi|1787078|gb|AAC73941.1| periplasmic putrescine-binding protein; permease protein [Escherichia coli K12]
>gi|1787367|gb|AAC74207.1| spermidine/putrescine periplasmic transport protein [Escherichia coli K12]
--- CLUSTER 46 ---
>gi|1573048|gb|AAC21773.1| iron(III) ABC transporter, periplasmic-binding protein (hitA) [Haemophilus influenzae Rd]
>gi|1573085|gb|AAC21803.1| afuA protein [Haemophilus influenzae Rd]
--- CLUSTER 47 ---
>gi|1573059|gb|AAC21784.1| signal recognition particle protein (ffh) [Haemophilus influenzae Rd]
>gi|1573776|gb|AAC22426.1| cell division protein (ftsY) [Haemophilus influenzae Rd]
>gi|1788963|gb|AAC75659.1| GTP-binding export factor binds to signal sequence, GTP and RNA [Escherichia coli K12]
>gi|1789874|gb|AAC76489.1| cell division membrane protein [Escherichia coli K12]
--- CLUSTER 48 --- SPLIT INTO 1497 1498
>gi|1573003|gb|AAC21734.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1573060|gb|AAC21785.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1573270|gb|AAC21966.1| hemolysin, putative [Haemophilus influenzae Rd]
>gi|1573427|gb|AAC22110.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786879|gb|AAC73759.1| putative transport protein [Escherichia coli K12]
>gi|1788119|gb|AAC74886.1| putative transport protein [Escherichia coli K12]
>gi|1788377|gb|AAC75124.1| putative transport protein [Escherichia coli K12]
>gi|1788966|gb|AAC75662.1| putative transport protein [Escherichia coli K12]
>gi|1789197|gb|AAC75871.1| putative transport protein [Escherichia coli K12]
>gi|1790664|gb|AAC77175.1| putative transport protein [Escherichia coli K12]
--- CLUSTER 49 ---
>gi|1573060|gb|AAC21785.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788965|gb|AAC75661.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 50 ---
>gi|1574576|gb|AAC23366.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789980|gb|AAC76581.1| IS150 hypothetical protein [Escherichia coli K12]
--- CLUSTER 51 ---
>gi|1573064|gb|AAC21791.1| H. influenzae predicted coding region HI0112 [Haemophilus influenzae Rd]
>gi|1574576|gb|AAC23366.1| conserved hypothetical protein [Haemophilus influenzae Rd]
--- CLUSTER 52 ---
>gi|1574305|gb|AAC23115.1| H. influenzae predicted coding region HI1466 [Haemophilus influenzae Rd]
>gi|1787024|gb|AAC73892.1| putative outer membrane receptor for iron transport [Escherichia coli K12]
--- CLUSTER 53 ---
>gi|1786559|gb|AAC73465.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788304|gb|AAC75056.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 54 ---
>gi|1788304|gb|AAC75056.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788478|gb|AAC75216.1| outer membrane receptor for iron-regulated colicin I receptor; porin; requires tonB gene product [Escherichia coli K12]
--- CLUSTER 55 --- SPLIT INTO 1499 1500 1501 1502
>gi|1573228|gb|AAC21927.1| heme-hemopexin utilization protein C [Haemophilus influenzae Rd]
>gi|3212228|gb|AAC23131.1| H. influenzae predicted coding region HI1466.1 [Haemophilus influenzae Rd]
>gi|1786344|gb|AAC73261.1| outer membrane protein receptor for ferrichrome, colicin M, and phages T1, T5, and phi80 [Escherichia coli K12]
>gi|1786798|gb|AAC73685.1| outer membrane receptor for ferric enterobactin (enterochelin) and colicins B and D [Escherichia coli K12]
>gi|1787024|gb|AAC73892.1| putative outer membrane receptor for iron transport [Escherichia coli K12]
>gi|1787344|gb|AAC74186.1| outer membrane receptor for ferric iron uptake [Escherichia coli K12]
>gi|1787723|gb|AAC74533.1| putative outer membrane receptor for iron transport [Escherichia coli K12]
>gi|1788307|gb|AAC75059.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788478|gb|AAC75216.1| outer membrane receptor for iron-regulated colicin I receptor; porin; requires tonB gene product [Escherichia coli K12]
>gi|1790405|gb|AAC76948.1| outer membrane receptor for transport of vitamin B12, E colicins, and bacteriophage BF23 [Escherichia coli K12]
>gi|1790743|gb|AAC77247.1| outer membrane receptor; citrate-dependent iron transport, outer membrane receptor [Escherichia coli K12]
--- CLUSTER 56 ---
>gi|1573065|gb|AAC21789.1| hemin receptor (hemR) [Haemophilus influenzae Rd]
>gi|1573228|gb|AAC21927.1| heme-hemopexin utilization protein C [Haemophilus influenzae Rd]
--- CLUSTER 57 ---
>gi|1574024|gb|AAC22656.1| transferrin-binding protein 1 precursor (tbp1) [Haemophilus influenzae Rd]
>gi|1574147|gb|AAC22870.1| transferrin-binding protein, putative [Haemophilus influenzae Rd]
--- CLUSTER 58 --- SPLIT INTO 1503 1504
>gi|1573065|gb|AAC21789.1| hemin receptor (hemR) [Haemophilus influenzae Rd]
>gi|1573631|gb|AAC22294.1| hemoglobin-binding protein [Haemophilus influenzae Rd]
>gi|3212198|gb|AAC22319.1| hemoglobin-binding protein [Haemophilus influenzae Rd]
>gi|1573714|gb|AAC22369.1| hemoglobin-binding protein [Haemophilus influenzae Rd]
>gi|1574024|gb|AAC22656.1| transferrin-binding protein 1 precursor (tbp1) [Haemophilus influenzae Rd]
>gi|3212230|gb|AAC23213.1| hemoglobin-binding protein [Haemophilus influenzae Rd]
>gi|3212231|gb|AAC23214.1| TonB-dependent receptor, putative [Haemophilus influenzae Rd]
--- CLUSTER 59 --- SPLIT INTO 1505 1506
>gi|1573073|gb|AAC21793.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1574288|gb|AAC23099.1| molybdopterin biosynthesis protein (moeB) [Haemophilus influenzae Rd]
>gi|1787048|gb|AAC73913.1| molybdopterin biosynthesis [Escherichia coli K12]
>gi|1789177|gb|AAC75854.1| putative enzyme [Escherichia coli K12]
>gi|1790425|gb|AAC76966.1| thiamin biosynthesis, thiazole moiety [Escherichia coli K12]
--- CLUSTER 60 ---
>gi|1574691|gb|AAC22791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Haemophilus influenzae Rd]
>gi|1786276|gb|AAC73199.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli K12]
--- CLUSTER 61 ---
>gi|1574689|gb|AAC22789.1| UDP-MurNAc-pentapeptide synthetase (murF) [Haemophilus influenzae Rd]
>gi|1574691|gb|AAC22791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Haemophilus influenzae Rd]
--- CLUSTER 62 --- SPLIT INTO 1507 1508
>gi|1573076|gb|AAC21795.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1574689|gb|AAC22789.1| UDP-MurNAc-pentapeptide synthetase (murF) [Haemophilus influenzae Rd]
>gi|1574695|gb|AAC22794.1| UDP-N-acetylmuramate--alanine ligase (murC) [Haemophilus influenzae Rd]
>gi|1786274|gb|AAC73197.1| D-alanine:D-alanine-adding enzyme [Escherichia coli K12]
>gi|1786279|gb|AAC73202.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase [Escherichia coli K12]
>gi|1790680|gb|AAC77190.1| putative ligase [Escherichia coli K12]
--- CLUSTER 63 ---
>gi|1573049|gb|AAC21774.1| iron(III) ABC transporter, permease protein (hitB) [Haemophilus influenzae Rd]
>gi|1787571|gb|AAC74394.1| putative transport system permease protein [Escherichia coli K12]
--- CLUSTER 64 --- SPLIT INTO 1509 1510
>gi|1574633|gb|AAC22735.1| amino acid ABC transporter, permease protein [Haemophilus influenzae Rd]
>gi|1574102|gb|AAC22828.1| arginine ABC transporter, permease protein (artM) [Haemophilus influenzae Rd]
>gi|1574103|gb|AAC22829.1| arginine ABC transporter, permease protein (artQ) [Haemophilus influenzae Rd]
>gi|1786397|gb|AAC73309.1| putative transport system permease protein [Escherichia coli K12]
>gi|1786873|gb|AAC73754.1| glutamate/aspartate transport system permease [Escherichia coli K12]
>gi|1786874|gb|AAC73755.1| glutamate/aspartate transport system permease [Escherichia coli K12]
>gi|1787030|gb|AAC73897.1| glutamine high-affinity transport system; membrane component [Escherichia coli K12]
>gi|1787086|gb|AAC73948.1| arginine 3rd transport system permease protein [Escherichia coli K12]
>gi|1787087|gb|AAC73949.1| arginine 3rd transport system permease protein [Escherichia coli K12]
>gi|1788226|gb|AAC74985.1| putative transport system permease protein (former yecC) [Escherichia coli K12]
>gi|1788645|gb|AAC75367.1| histidine transport, membrane protein M [Escherichia coli K12]
>gi|1788646|gb|AAC75368.1| histidine transport system permease protein [Escherichia coli K12]
>gi|1789669|gb|AAC76301.1| putative transport system permease protein [Escherichia coli K12]
>gi|1789671|gb|AAC76302.1| putative transport system permease protein [Escherichia coli K12]
--- CLUSTER 65 ---
>gi|1574214|gb|AAC23026.1| phosphate ABC transporter, permease protein (pstA) [Haemophilus influenzae Rd]
>gi|1790163|gb|AAC76749.1| high-affinity phosphate-specific transport system [Escherichia coli K12]
--- CLUSTER 66 ---
>gi|1574545|gb|AAC23338.1| molybdenum ABC transporter, permease protein (modB) [Haemophilus influenzae Rd]
>gi|1790163|gb|AAC76749.1| high-affinity phosphate-specific transport system [Escherichia coli K12]
--- CLUSTER 67 --- SPLIT INTO 1511 1512 1513 1514 1515 1516 1517
>gi|3212179|gb|AAC21802.1| H. influenzae predicted coding region HI0129 [Haemophilus influenzae Rd]
>gi|1573324|gb|AAC22015.1| ABC transporter, permease protein [Haemophilus influenzae Rd]
>gi|1574049|gb|AAC22679.1| thiamin ABC transporter, permease protein, putative [Haemophilus influenzae Rd]
>gi|1574804|gb|AAC22989.1| spermidine/putrescine ABC transporter, permease protein (potC) [Haemophilus influenzae Rd]
>gi|1574805|gb|AAC22990.1| spermidine/putrescine ABC transporter, permease protein (potB) [Haemophilus influenzae Rd]
>gi|1574545|gb|AAC23338.1| molybdenum ABC transporter, permease protein (modB) [Haemophilus influenzae Rd]
>gi|1786254|gb|AAC73178.1| putative transport system permease protein [Escherichia coli K12]
>gi|1786397|gb|AAC73309.1| putative transport system permease protein [Escherichia coli K12]
>gi|1786564|gb|AAC73470.1| taurine transport system permease protein [Escherichia coli K12]
>gi|1786980|gb|AAC73851.1| molybdate transport permease protein [Escherichia coli K12]
>gi|1787080|gb|AAC73943.1| putrescine transport protein; permease [Escherichia coli K12]
>gi|1787081|gb|AAC73944.1| putrescine transport protein; permease [Escherichia coli K12]
>gi|1787165|gb|AAC74020.1| putative transport system permease protein [Escherichia coli K12]
>gi|1787368|gb|AAC74208.1| spermidine/putrescine transport system permease [Escherichia coli K12]
>gi|1787369|gb|AAC74209.1| spermidine/putrescine transport system permease [Escherichia coli K12]
>gi|1787570|gb|AAC74393.1| putative binding-protein dependent transport protein [Escherichia coli K12]
>gi|1787571|gb|AAC74394.1| putative transport system permease protein [Escherichia coli K12]
>gi|1787713|gb|AAC74524.1| putative transport system permease protein [Escherichia coli K12]
>gi|1787714|gb|AAC74525.1| putative transport system permease protein [Escherichia coli K12]
>gi|1788449|gb|AAC75189.1| putative transport system permease protein [Escherichia coli K12]
>gi|1788451|gb|AAC75191.1| putative transport system permease protein [Escherichia coli K12]
>gi|1788762|gb|AAC75476.1| sulfate transport system permease W protein [Escherichia coli K12]
>gi|1788764|gb|AAC75477.1| sulfate, thiosulfate transport system permease T protein [Escherichia coli K12]
>gi|1789033|gb|AAC75725.1| high-affinity transport system for glycine betaine and proline [Escherichia coli K12]
>gi|1789860|gb|AAC76476.1| sn-glycerol 3-phosphate transport system, integral membrane protein [Escherichia coli K12]
>gi|1789861|gb|AAC76477.1| sn-glycerol 3-phosphate transport system, integral membrane protein [Escherichia coli K12]
>gi|1790464|gb|AAC77002.1| part of maltose permease, inner membrane [Escherichia coli K12]
>gi|1790465|gb|AAC77003.1| part of maltose permease, periplasmic [Escherichia coli K12]
--- CLUSTER 68 ---
>gi|3212179|gb|AAC21802.1| H. influenzae predicted coding region HI0129 [Haemophilus influenzae Rd]
>gi|1786458|gb|AAC73366.1| putative transport system permease protein [Escherichia coli K12]
--- CLUSTER 69 ---
>gi|1573098|gb|AAC21814.1| N-acetylneuraminate lyase (nanA) [Haemophilus influenzae Rd]
>gi|1573221|gb|AAC21921.1| dihydrodipicolinate synthetase (dapA) [Haemophilus influenzae Rd]
>gi|1786463|gb|AAC73371.1| putative lyase/synthase [Escherichia coli K12]
>gi|1788823|gb|AAC75531.1| dihydrodipicolinate synthase [Escherichia coli K12]
>gi|1789620|gb|AAC76257.1| N-acetylneuraminate lyase (aldolase); catabolism of sialic acid; not K12? [Escherichia coli K12]
>gi|1790751|gb|AAC77254.1| putative lyase/synthase [Escherichia coli K12]
--- CLUSTER 70 --- SPLIT INTO 1518 1519
>gi|1573100|gb|AAC21816.1| glucose kinase, putative [Haemophilus influenzae Rd]
>gi|1573138|gb|AAC21851.1| sugar kinase, putative [Haemophilus influenzae Rd]
>gi|1786593|gb|AAC73497.1| possible NAGC-like transcriptional regulator [Escherichia coli K12]
>gi|1786891|gb|AAC73770.1| transcriptional repressor of nag (N-acetylglucosamine) operon [Escherichia coli K12]
>gi|1787363|gb|AAC74203.1| putative NAGC-like transcriptional regulator [Escherichia coli K12]
>gi|1787878|gb|AAC74666.1| putative NAGC-like transcriptional regulator [Escherichia coli K12]
>gi|1788901|gb|AAC75603.1| putative NAGC-like transcriptional regulator [Escherichia coli K12]
>gi|1789616|gb|AAC76254.1| putative NAGC-like transcriptional regulator [Escherichia coli K12]
>gi|1790522|gb|AAC77045.1| putative NAGC-like transcriptional regulator [Escherichia coli K12]
--- CLUSTER 71 --- SPLIT INTO 1520 1521
>gi|1573107|gb|AAC21821.1| hflC protein (hflC) [Haemophilus influenzae Rd]
>gi|1573108|gb|AAC21822.1| hflK protein (hflK) [Haemophilus influenzae Rd]
>gi|1786697|gb|AAC73591.1| putative protease [Escherichia coli K12]
>gi|1790616|gb|AAC77131.1| protease specific for phage lambda cII repressor [Escherichia coli K12]
--- CLUSTER 72 ---
>gi|1573107|gb|AAC21821.1| hflC protein (hflC) [Haemophilus influenzae Rd]
>gi|1790617|gb|AAC77132.1| protease specific for phage lambda cII repressor [Escherichia coli K12]
--- CLUSTER 73 --- SPLIT INTO 1522 1523 1524 1525 1526
>gi|1573119|gb|AAC21833.1| glutathione reductase (gor) [Haemophilus influenzae Rd]
>gi|1573754|gb|AAC22405.1| NADH dehydrogenase (ndh) [Haemophilus influenzae Rd]
>gi|1574715|gb|AAC22813.1| thioredoxin reductase (trxB) [Haemophilus influenzae Rd]
>gi|1574161|gb|AAC22884.1| dihydrolipoamide dehydrogenase (lpdA) [Haemophilus influenzae Rd]
>gi|1786307|gb|AAC73227.1| lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex [Escherichia coli K12]
>gi|1786495|gb|AAC73407.1| putative oxidoreductase [Escherichia coli K12]
>gi|1786823|gb|AAC73707.1| alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxides [Escherichia coli K12]
>gi|1787114|gb|AAC73974.1| thioredoxin reductase [Escherichia coli K12]
>gi|1787352|gb|AAC74193.1| respiratory NADH dehydrogenase [Escherichia coli K12]
>gi|1788892|gb|AAC75595.1| ferredoxin reductase subunit of phenylpropionate dioxygenase [Escherichia coli K12]
>gi|1789065|gb|AAC75753.1| putative oxidoreductase [Escherichia coli K12]
>gi|1789765|gb|AAC76390.1| nitrite reductase (NAD(P)H) subunit [Escherichia coli K12]
>gi|1789915|gb|AAC76525.1| glutathione oxidoreductase [Escherichia coli K12]
>gi|1790400|gb|AAC76944.1| putative oxidoreductase [Escherichia coli K12]
--- CLUSTER 74 ---
>gi|1573125|gb|AAC21839.1| NADH:ubiquinone oxidoreductase, Na translocating [Haemophilus influenzae Rd]
>gi|1573126|gb|AAC21840.1| NADH:ubiquinone oxidoreductase, Na translocating [Haemophilus influenzae Rd]
>gi|1574535|gb|AAC23329.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1574540|gb|AAC23334.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787914|gb|AAC74699.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787919|gb|AAC74704.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 75 ---
>gi|1574712|gb|AAC22810.1| anaerobic ribonucleoside-triphosphate reductase activating protein (nrdG) [Haemophilus influenzae Rd]
>gi|1790685|gb|AAC77194.1| anaerobic ribonucleotide reductase activating protein [Escherichia coli K12]
--- CLUSTER 76 --- SPLIT INTO 1527 1528
>gi|1573135|gb|AAC21848.1| pyruvate formate-lyase activating enzyme (act) [Haemophilus influenzae Rd]
>gi|1573503|gb|AAC22178.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787045|gb|AAC73911.1| putative pyruvate formate-lyase 2 activating enzyme [Escherichia coli K12]
>gi|1787130|gb|AAC73988.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli K12]
>gi|1790389|gb|AAC76934.1| probable pyruvate formate lyase activating enzyme 2 [Escherichia coli K12]
>gi|1790685|gb|AAC77194.1| anaerobic ribonucleotide reductase activating protein [Escherichia coli K12]
--- CLUSTER 77 ---
>gi|1573139|gb|AAC21852.1| amino acid carrier protein, putative [Haemophilus influenzae Rd]
>gi|1573900|gb|AAC22541.1| amino acid carrier protein, putative [Haemophilus influenzae Rd]
>gi|1786188|gb|AAC73118.1| inner membrane transport protein [Escherichia coli K12]
--- CLUSTER 78 ---
>gi|1573159|gb|AAC21868.1| lipid A biosynthesis (kdo)2-(lauroyl)-lipid IVA acyltransferase (msbB) [Haemophilus influenzae Rd]
>gi|1574368|gb|AAC23173.1| lipid A biosynthesis lauroyl acyltransferase (htrB) [Haemophilus influenzae Rd]
>gi|1787292|gb|AAC74138.1| heat shock protein [Escherichia coli K12]
>gi|1788161|gb|AAC74925.1| suppressor of htrB, heat shock protein [Escherichia coli K12]
>gi|1788721|gb|AAC75437.1| putative heat shock protein [Escherichia coli K12]
--- CLUSTER 79 ---
>gi|1573165|gb|AAC21874.1| 5'-nucleotidase, putative [Haemophilus influenzae Rd]
>gi|1573573|gb|AAC22242.1| 2',3'-cyclic-nucleotide 2'-phosphodiesterase (cpdB) [Haemophilus influenzae Rd]
>gi|1786687|gb|AAC73582.1| UDP-sugar hydrolase (5'-nucleotidase) [Escherichia coli K12]
>gi|1790658|gb|AAC77170.1| 2':3'-cyclic-nucleotide 2'-phosphodiesterase [Escherichia coli K12]
--- CLUSTER 80 ---
>gi|1573173|gb|AAC21881.1| oligopeptide transporter, periplasmic-binding protein, putative [Haemophilus influenzae Rd]
>gi|1573869|gb|AAC22512.1| heme-binding lipoprotein (dppA) [Haemophilus influenzae Rd]
>gi|1574679|gb|AAC22778.1| oligopeptide ABC transporter, periplasmic-binding protein (oppA) [Haemophilus influenzae Rd]
>gi|1574486|gb|AAC23285.1| peptide ABC transporter, periplasmic-binding protein (sapA) [Haemophilus influenzae Rd]
>gi|1787052|gb|AAC73917.1| putative transport protein [Escherichia coli K12]
>gi|1787495|gb|AAC74325.1| oligopeptide transport; periplasmic binding protein [Escherichia coli K12]
>gi|1787551|gb|AAC74376.1| homolog of Salmonella peptide transport periplasmic protein [Escherichia coli K12]
>gi|1787590|gb|AAC74411.1| putative transport periplasmic protein [Escherichia coli K12]
>gi|1787762|gb|AAC74560.1| putative hemin-binding lipoprotein [Escherichia coli K12]
>gi|1789397|gb|AAC76056.1| putative transport periplasmic protein [Escherichia coli K12]
>gi|1789887|gb|AAC76501.1| periplasmic binding protein for nickel [Escherichia coli K12]
>gi|1789966|gb|AAC76569.1| dipeptide transport protein [Escherichia coli K12]
--- CLUSTER 81 ---
>gi|1574223|gb|AAC23035.1| anthanilate phosphoribosyltransferase (trpD) [Haemophilus influenzae Rd]
>gi|1787517|gb|AAC74345.1| anthranilate synthase component II, glutamine amidotransferase and phosphoribosylanthranilate transferase [Escherichia coli K12]
--- CLUSTER 82 --- SPLIT INTO 1529 1530 1531
>gi|3212188|gb|AAC21895.1| H. influenzae predicted coding region HI0221.1 [Haemophilus influenzae Rd]
>gi|1573186|gb|AAC21891.1| GMP synthase (guaA) [Haemophilus influenzae Rd]
>gi|1574098|gb|AAC22824.1| anthranilate synthase component II (trpG) [Haemophilus influenzae Rd]
>gi|1574222|gb|AAC23034.1| anthranilate synthase component II (trpG) [Haemophilus influenzae Rd]
>gi|1786215|gb|AAC73143.1| carbamoyl-phosphate synthetase, glutamine (small) subunit [Escherichia coli K12]
>gi|1787517|gb|AAC74345.1| anthranilate synthase component II, glutamine amidotransferase and phosphoribosylanthranilate transferase [Escherichia coli K12]
>gi|1788854|gb|AAC75560.1| GMP synthetase (glutamine-hydrolyzing) [Escherichia coli K12]
>gi|1789760|gb|AAC76385.1| p-aminobenzoate synthetase, component II [Escherichia coli K12]
--- CLUSTER 83 --- SPLIT INTO 1532 1533
>gi|1573185|gb|AAC21890.1| inosine-5'-monophosphate dehydrogenase (guaB) [Haemophilus influenzae Rd]
>gi|3212188|gb|AAC21895.1| H. influenzae predicted coding region HI0221.1 [Haemophilus influenzae Rd]
>gi|1786293|gb|AAC73215.1| GMP reductase [Escherichia coli K12]
>gi|1788855|gb|AAC75561.1| IMP dehydrogenase [Escherichia coli K12]
--- CLUSTER 84 ---
>gi|3212187|gb|AAC21892.1| rarD protein, putative [Haemophilus influenzae Rd]
>gi|1573680|gb|AAC22339.1| rarD protein, putative [Haemophilus influenzae Rd]
>gi|1790252|gb|AAC76822.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 85 ---
>gi|1573188|gb|AAC21893.1| transcriptional regulator, putative [Haemophilus influenzae Rd]
>gi|1573550|gb|AAC22221.1| transcriptional regulatory protein (asnC) [Haemophilus influenzae Rd]
>gi|1574439|gb|AAC23241.1| leucine responsive regulatory protein (lrp) [Haemophilus influenzae Rd]
>gi|1786652|gb|AAC73550.1| putative LRP-like transcriptional regulator [Escherichia coli K12]
>gi|1787116|gb|AAC73975.1| regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system [Escherichia coli K12]
>gi|1790182|gb|AAC76766.1| regulator for asnA, asnC and gidA [Escherichia coli K12]
--- CLUSTER 86 --- SPLIT INTO 1534 1535
>gi|1573308|gb|AAC22001.1| primosomal protein N' (priA) [Haemophilus influenzae Rd]
>gi|1574188|gb|AAC22905.1| transcription-repair coupling factor (mfd) [Haemophilus influenzae Rd]
>gi|1574599|gb|AAC23387.1| ATP-dependent DNA helicase (recG) [Haemophilus influenzae Rd]
>gi|1787357|gb|AAC74198.1| transcription-repair coupling factor; mutation frequency decline [Escherichia coli K12]
>gi|2367254|gb|AAC76676.1| DNA helicase, resolution of Holliday junctions, branch migration [Escherichia coli K12]
>gi|1790370|gb|AAC76917.1| primosomal protein N'(= factor Y)(putative helicase) [Escherichia coli K12]
--- CLUSTER 87 --- SPLIT INTO 1536 1537
>gi|1573195|gb|AAC21900.1| ATP-dependent RNA helicase (deaD) [Haemophilus influenzae Rd]
>gi|1573394|gb|AAC22078.1| ATP-dependent RNA helicase (srmB) [Haemophilus influenzae Rd]
>gi|1573732|gb|AAC22387.1| ATP-dependent DNA helicase (recQ) [Haemophilus influenzae Rd]
>gi|1573911|gb|AAC22552.1| ATP-dependent RNA helicase (rhlB) [Haemophilus influenzae Rd]
>gi|1574599|gb|AAC23387.1| ATP-dependent DNA helicase (recG) [Haemophilus influenzae Rd]
>gi|1787016|gb|AAC73884.1| putative ATP-dependent RNA helicase [Escherichia coli K12]
>gi|1787605|gb|AAC74425.1| ATP-dependent RNA helicase [Escherichia coli K12]
>gi|1788930|gb|AAC75629.1| ATP-dependent RNA helicase [Escherichia coli K12]
>gi|1789553|gb|AAC76196.1| inducible ATP-independent RNA helicase [Escherichia coli K12]
>gi|1790214|gb|AAC76785.1| putative ATP-dependent RNA helicase [Escherichia coli K12]
>gi|2367301|gb|AAC76825.1| ATP-dependent DNA helicase [Escherichia coli K12]
--- CLUSTER 88 --- SPLIT INTO 1538 1539
>gi|1573235|gb|AAC21935.1| RNA polymerase sigma-32 factor (rpoH) [Haemophilus influenzae Rd]
>gi|1573517|gb|AAC22190.1| RNA polymerase sigma-70 factor (rpoD) [Haemophilus influenzae Rd]
>gi|1788231|gb|AAC74989.1| flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons [Escherichia coli K12]
>gi|1789098|gb|AAC75783.1| RNA polymerase, sigma S (sigma38) factor; synthesis of many growth phase related proteins [Escherichia coli K12]
>gi|1789448|gb|AAC76103.1| RNA polymerase, sigma(70) factor; regulation of proteins induced at high temperatures [Escherichia coli K12]
>gi|1789871|gb|AAC76486.1| RNA polymerase, sigma(32) factor; regulation of proteins induced at high temperatures [Escherichia coli K12]
--- CLUSTER 89 --- SPLIT INTO 1540 1541
>gi|1573236|gb|AAC21936.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1573630|gb|AAC22293.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1574007|gb|AAC22639.1| nitrogen fixation protein (nifR3) [Haemophilus influenzae Rd]
>gi|1788462|gb|AAC75201.1| putative regulator protein [Escherichia coli K12]
>gi|1789660|gb|AAC76292.1| putative dehydrogenase [Escherichia coli K12]
>gi|1790483|gb|AAC77019.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 90 --- SPLIT INTO 1542 1543 1544 1545
>gi|1573240|gb|AAC21940.1| glutamyl-tRNA synthetase (gltX) [Haemophilus influenzae Rd]
>gi|1574816|gb|AAC23001.1| glutaminyl-tRNA synthetase (glnS) [Haemophilus influenzae Rd]
>gi|1786337|gb|AAC73255.1| putative tRNA synthetase [Escherichia coli K12]
>gi|1786895|gb|AAC73774.1| glutamine tRNA synthetase [Escherichia coli K12]
>gi|1788743|gb|AAC75457.1| glutamate tRNA synthetase, catalytic subunit [Escherichia coli K12]
--- CLUSTER 91 ---
>gi|1574146|gb|AAC22869.1| pfs protein (pfs) [Haemophilus influenzae Rd]
>gi|1786354|gb|AAC73270.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 92 ---
>gi|1573501|gb|AAC22176.1| purine-nucleoside phosphorylase (deoD) [Haemophilus influenzae Rd]
>gi|1574146|gb|AAC22869.1| pfs protein (pfs) [Haemophilus influenzae Rd]
--- CLUSTER 93 ---
>gi|1573245|gb|AAC21943.1| uridine phosphorylase (udp) [Haemophilus influenzae Rd]
>gi|1573501|gb|AAC22176.1| purine-nucleoside phosphorylase (deoD) [Haemophilus influenzae Rd]
>gi|1790265|gb|AAC76834.1| uridine phosphorylase [Escherichia coli K12]
>gi|1790844|gb|AAC77337.1| purine-nucleoside phosphorylase [Escherichia coli K12]
--- CLUSTER 94 ---
>gi|1573277|gb|AAC21973.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1788886|gb|AAC75589.1| MFS (major facilitator superfamily) transporter [Escherichia coli K12]
--- CLUSTER 95 ---
>gi|1786686|gb|AAC73581.1| fosmidomycin resistance protein [Escherichia coli K12]
>gi|1787291|gb|AAC74137.1| putative transport protein [Escherichia coli K12]
--- CLUSTER 96 ---
>gi|1787982|gb|AAC74761.1| putative amino acid/amine transport protein [Escherichia coli K12]
>gi|1789969|gb|AAC76571.1| putative resistance protein [Escherichia coli K12]
--- CLUSTER 97 ---
>gi|1786536|gb|AAC73444.1| cyanate transport [Escherichia coli K12]
>gi|1788092|gb|AAC74861.1| putative amino acid/amine transport protein [Escherichia coli K12]
--- CLUSTER 98 ---
>gi|1788662|gb|AAC75382.1| putative transport protein [Escherichia coli K12]
>gi|1789884|gb|AAC76498.1| putative transport [Escherichia coli K12]
--- CLUSTER 99 --- SPLIT INTO 1546 1547 1548 1549 1550
>gi|1573088|gb|AAC21806.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1573246|gb|AAC21944.1| transport protein, putative [Haemophilus influenzae Rd]
>gi|1573277|gb|AAC21973.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1573392|gb|AAC22076.1| transport protein, putative [Haemophilus influenzae Rd]
>gi|3212201|gb|AAC22346.1| glycerol-3-phosphatase transporter (glpT) [Haemophilus influenzae Rd]
>gi|1573866|gb|AAC22509.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1573916|gb|AAC22557.1| multidrug resistance protein B (emrB) [Haemophilus influenzae Rd]
>gi|1574658|gb|AAC22759.1| transporter protein [Haemophilus influenzae Rd]
>gi|1574174|gb|AAC22894.1| bicyclomycin resistance protein (bcr) [Haemophilus influenzae Rd]
>gi|1786229|gb|AAC73156.1| putative transport protein [Escherichia coli K12]
>gi|1786257|gb|AAC73181.1| putative transport protein [Escherichia coli K12]
>gi|1786549|gb|AAC73456.1| putative transport protein [Escherichia coli K12]
>gi|1786595|gb|AAC73499.1| involved in either transport or processing of arabinose polymers [Escherichia coli K12]
>gi|1786630|gb|AAC73530.1| putative transport protein [Escherichia coli K12]
>gi|1786806|gb|AAC73692.1| putative transport [Escherichia coli K12]
>gi|1787065|gb|AAC73929.1| proton motive force efflux pump [Escherichia coli K12]
>gi|1787068|gb|AAC73932.1| putative DEOR-type transcriptional regulator [Escherichia coli K12]
>gi|1787291|gb|AAC74137.1| putative transport protein [Escherichia coli K12]
>gi|1787304|gb|AAC74149.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787808|gb|AAC74601.1| putative resistance / regulatory protein [Escherichia coli K12]
>gi|1787815|gb|AAC74607.1| putative transport protein [Escherichia coli K12]
>gi|1787824|gb|AAC74616.1| putative transport protein [Escherichia coli K12]
>gi|1787880|gb|AAC74668.1| putative transport protein [Escherichia coli K12]
>gi|1787947|gb|AAC74729.1| putative transport protein [Escherichia coli K12]
>gi|1787950|gb|AAC74732.1| putative transport protein [Escherichia coli K12]
>gi|1787981|gb|AAC74760.1| putative transport system permease protein [Escherichia coli K12]
>gi|1787982|gb|AAC74761.1| putative amino acid/amine transport protein [Escherichia coli K12]
>gi|1788068|gb|AAC74839.1| putative transport protein [Escherichia coli K12]
>gi|1788074|gb|AAC74845.1| putative transport protein [Escherichia coli K12]
>gi|1788092|gb|AAC74861.1| putative amino acid/amine transport protein [Escherichia coli K12]
>gi|1788132|gb|AAC74898.1| putative transport protein [Escherichia coli K12]
>gi|1788292|gb|AAC75045.1| putative transport protein, shikimate [Escherichia coli K12]
>gi|1788392|gb|AAC75138.1| putative transport protein [Escherichia coli K12]
>gi|1788495|gb|AAC75231.1| putative transport [Escherichia coli K12]
>gi|1788509|gb|AAC75243.1| bicyclomycin resistance protein; transmembrane protein [Escherichia coli K12]
>gi|1788573|gb|AAC75300.1| sn-glycerol-3-phosphate permease [Escherichia coli K12]
>gi|1788579|gb|AAC75306.1| putative transport protein [Escherichia coli K12]
>gi|1788662|gb|AAC75382.1| putative transport protein [Escherichia coli K12]
>gi|1788710|gb|AAC75426.1| multidrug resistance protein Y [Escherichia coli K12]
>gi|1788942|gb|AAC75640.1| alpha-ketoglutarate permease [Escherichia coli K12]
>gi|1789036|gb|AAC75728.1| putative transport protein [Escherichia coli K12]
>gi|1789042|gb|AAC75733.1| multidrug resistance; probably membrane translocase [Escherichia coli K12]
>gi|1789130|gb|AAC75813.1| putative transport protein [Escherichia coli K12]
>gi|1789152|gb|AAC75831.1| putative transport protein [Escherichia coli K12]
>gi|1789207|gb|AAC75880.1| low-affinity L-arabinose transport system proton symport protein [Escherichia coli K12]
>gi|1789312|gb|AAC75980.1| galactose-proton symport of transport system [Escherichia coli K12]
>gi|2367193|gb|AAC76128.1| transport of hexuronates [Escherichia coli K12]
>gi|1789515|gb|AAC76161.1| putative transport protein [Escherichia coli K12]
>gi|1789618|gb|AAC76256.1| sialic acid transporter [Escherichia coli K12]
>gi|1789941|gb|AAC76548.1| putative transport protein [Escherichia coli K12]
>gi|1790091|gb|AAC76682.1| two-module transport protein [Escherichia coli K12]
>gi|1790095|gb|AAC76685.1| putative transport protein [Escherichia coli K12]
>gi|2367259|gb|AAC76689.1| hexose phosphate transport protein [Escherichia coli K12]
>gi|2367260|gb|AAC76690.1| regulator of uhpT [Escherichia coli K12]
>gi|1790107|gb|AAC76696.1| 2-module integral membrane pump; multidrug resistance [Escherichia coli K12]
>gi|1790126|gb|AAC76714.1| D-galactonate transport [Escherichia coli K12]
>gi|1790146|gb|AAC76733.1| putative transport protein [Escherichia coli K12]
>gi|1790195|gb|AAC76777.1| putative transport protein [Escherichia coli K12]
>gi|1790463|gb|AAC77001.1| xylose-proton symport [Escherichia coli K12]
>gi|1790550|gb|AAC77072.1| low-affinity transport system; proline permease II [Escherichia coli K12]
>gi|1790730|gb|AAC77235.1| putative transport protein [Escherichia coli K12]
>gi|1790794|gb|AAC77293.1| putative transport protein [Escherichia coli K12]
>gi|2367379|gb|AAC77312.1| putative transport protein, cryptic, orf, joins former yjiZ and yjjL [Escherichia coli K12]
--- CLUSTER 100 --- SPLIT INTO 1551 1552 1553 1554
>gi|1573249|gb|AAC21947.1| menaquinone-specific isochorismate synthase (menF) [Haemophilus influenzae Rd]
>gi|1574097|gb|AAC22834.1| H. influenzae predicted coding region HI1170 [Haemophilus influenzae Rd]
>gi|1574221|gb|AAC23033.1| anthranilate synthase component I (trpE) [Haemophilus influenzae Rd]
>gi|1786809|gb|AAC73694.1| isochorismate hydroxymutase 2, enterochelin biosynthesis [Escherichia coli K12]
>gi|1787518|gb|AAC74346.1| anthranilate synthase component I [Escherichia coli K12]
>gi|1788114|gb|AAC74882.1| p-aminobenzoate synthetase, component I [Escherichia coli K12]
>gi|1788600|gb|AAC75325.1| isochorismate hydroxymutase 2, menaquinone biosynthesis [Escherichia coli K12]
--- CLUSTER 101 --- SPLIT INTO 1555 1556
>gi|1573250|gb|AAC21948.1| aminotransferase [Haemophilus influenzae Rd]
>gi|1573449|gb|AAC22129.1| histidinol-phosphate aminotransferase (hisC) [Haemophilus influenzae Rd]
>gi|1574093|gb|AAC22821.1| histidinol-phosphate aminotransferase (hisH) [Haemophilus influenzae Rd]
>gi|1786816|gb|AAC73701.1| putative aminotransferase [Escherichia coli K12]
>gi|1787710|gb|AAC74521.1| multi modular; putative transcriptional regulator; also putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787909|gb|AAC74694.1| enzyme that may degrade or block biosynthesis of endogenous mal inducer, probably aminotrasferase [Escherichia coli K12]
>gi|1788332|gb|AAC75082.1| histidinol-phosphate aminotransferase [Escherichia coli K12]
>gi|1788627|gb|AAC75350.1| putative aminotransferase [Escherichia coli K12]
>gi|1788722|gb|AAC75438.1| putative aminotransferase [Escherichia coli K12]
>gi|1789996|gb|AAC76596.1| alanine-alpha-ketoisovalerate (or valine-pyruvate) transaminase, transaminase C [Escherichia coli K12]
>gi|1790797|gb|AAC77296.1| putative regulator [Escherichia coli K12]
--- CLUSTER 102 --- SPLIT INTO 1557 1558 1559 1560
>gi|1573580|gb|AAC22247.1| putrescine-ornithine antiporter (potE) [Haemophilus influenzae Rd]
>gi|1786302|gb|AAC73223.1| aromatic amino acid transport protein [Escherichia coli K12]
>gi|1786455|gb|AAC73363.1| putative amino acid/amine transport protein [Escherichia coli K12]
>gi|1786602|gb|AAC73505.1| proline permease transport protein [Escherichia coli K12]
>gi|1786694|gb|AAC73588.1| putative amino acid/amine transport protein [Escherichia coli K12]
>gi|1786789|gb|AAC73677.1| phenylalanine-specific transport system [Escherichia coli K12]
>gi|1786908|gb|AAC73786.1| putrescine transport protein [Escherichia coli K12]
>gi|1787127|gb|AAC73985.1| putative transport [Escherichia coli K12]
>gi|1787553|gb|AAC74378.1| putative amino acid/amine transport protein [Escherichia coli K12]
>gi|1787725|gb|AAC74535.1| L-asparagine permease [Escherichia coli K12]
>gi|1787768|gb|AAC74565.1| acid sensitivity protein, putative transporter [Escherichia coli K12]
>gi|1787890|gb|AAC74677.1| putative arginine/ornithine antiporter [Escherichia coli K12]
>gi|1788325|gb|AAC75075.1| putative amino acid/amine transport protein [Escherichia coli K12]
>gi|1788480|gb|AAC75217.1| lysine-specific permease [Escherichia coli K12]
>gi|1789017|gb|AAC75710.1| transport permease protein of gamma-aminobutyrate [Escherichia coli K12]
>gi|1789459|gb|AAC76113.1| putative oxidoreductase [Escherichia coli K12]
>gi|2367216|gb|AAC76395.1| putative amino acid/amine transport protein [Escherichia coli K12]
>gi|2367290|gb|AAC76802.1| putative amino acid/amine transport protein [Escherichia coli K12]
>gi|2367353|gb|AAC77076.1| putative amino acid/amine transport protein, cryptic [Escherichia coli K12]
>gi|1790575|gb|AAC77093.1| transport of lysine/cadaverine [Escherichia coli K12]
>gi|1790584|gb|AAC77101.1| putative transport [Escherichia coli K12]
>gi|1790600|gb|AAC77116.1| putative transport [Escherichia coli K12]
>gi|1790653|gb|AAC77165.1| transport of D-alanine, D-serine, and glycine [Escherichia coli K12]
--- CLUSTER 103 ---
>gi|1573257|gb|AAC21954.1| serine transporter (sdaC) [Haemophilus influenzae Rd]
>gi|1786602|gb|AAC73505.1| proline permease transport protein [Escherichia coli K12]
--- CLUSTER 104 ---
>gi|1573255|gb|AAC21952.1| tryptophan-specific transport protein (mtr) [Haemophilus influenzae Rd]
>gi|1573257|gb|AAC21954.1| serine transporter (sdaC) [Haemophilus influenzae Rd]
>gi|1573455|gb|AAC22135.1| tyrosine-specific transport protein (tyrP) [Haemophilus influenzae Rd]
>gi|1573512|gb|AAC22185.1| tyrosine-specific transport protein (tyrP) [Haemophilus influenzae Rd]
>gi|1788218|gb|AAC74977.1| tyrosine-specific transport system [Escherichia coli K12]
>gi|1789160|gb|AAC75838.1| probable serine transporter [Escherichia coli K12]
>gi|1789211|gb|AAC75884.1| putative transporter protein [Escherichia coli K12]
>gi|1789497|gb|AAC76145.1| putative transport system permease protein [Escherichia coli K12]
>gi|1789504|gb|AAC76151.1| anaerobically inducible L-threonine, L-serine permease [Escherichia coli K12]
>gi|1789552|gb|AAC76195.1| tryptophan-specific transport protein [Escherichia coli K12]
>gi|1789961|gb|AAC76564.1| putative transporter protein [Escherichia coli K12]
>gi|1790145|gb|AAC76732.1| low affinity tryptophan permease [Escherichia coli K12]
--- CLUSTER 105 ---
>gi|1573259|gb|AAC21964.1| H. influenzae predicted coding region HI0291 [Haemophilus influenzae Rd]
>gi|1573260|gb|AAC21956.1| mercuric ion scavenger protein (merP) [Haemophilus influenzae Rd]
--- CLUSTER 106 ---
>gi|1786695|gb|AAC73589.1| putative transcriptional regulator [Escherichia coli K12]
>gi|1790498|gb|AAC77033.1| redox-sensing activator of soxS [Escherichia coli K12]
--- CLUSTER 107 ---
>gi|1573261|gb|AAC21957.1| transcriptional regulator, merR family, putative [Haemophilus influenzae Rd]
>gi|1574465|gb|AAC23268.1| mercuric resistance operon regulatory protein (merR2) [Haemophilus influenzae Rd]
>gi|1786695|gb|AAC73589.1| putative transcriptional regulator [Escherichia coli K12]
>gi|1789687|gb|AAC76317.1| putative transcriptional regulator [Escherichia coli K12]
--- CLUSTER 108 --- SPLIT INTO 1561 1562 1563
>gi|1573278|gb|AAC21974.1| integrase/recombinase (xerD) [Haemophilus influenzae Rd]
>gi|1573676|gb|AAC22336.1| integrase/recombinase (xerC) [Haemophilus influenzae Rd]
>gi|1789261|gb|AAC75932.1| site-specific recombinase [Escherichia coli K12]
>gi|1790244|gb|AAC76814.1| site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell division [Escherichia coli K12]
>gi|1790767|gb|AAC77268.1| recombinase involved in phase variation; regulator for fimA [Escherichia coli K12]
>gi|1790768|gb|AAC77269.1| recombinase involved in phase variation; regulator for fimA [Escherichia coli K12]
--- CLUSTER 109 --- SPLIT INTO 1564 1565
>gi|1573287|gb|AAC21981.1| aspartyl-tRNA synthetase (aspS) [Haemophilus influenzae Rd]
>gi|1573850|gb|AAC22494.1| lysyl-tRNA synthetase analog (genX) [Haemophilus influenzae Rd]
>gi|1574141|gb|AAC22865.1| lysyl-tRNA synthetase (lysU) [Haemophilus influenzae Rd]
>gi|1574761|gb|AAC22949.1| asparaginyl-tRNA synthetase (asnS) [Haemophilus influenzae Rd]
>gi|1787161|gb|AAC74016.1| asparagine tRNA synthetase [Escherichia coli K12]
>gi|1788173|gb|AAC74936.1| aspartate tRNA synthetase [Escherichia coli K12]
>gi|1789256|gb|AAC75928.1| lysine tRNA synthetase, constitutive; suppressor of ColE1 mutation in primer RNA [Escherichia coli K12]
>gi|1790571|gb|AAC77090.1| lysine tRNA synthetase, inducible; heat shock protein [Escherichia coli K12]
>gi|1790599|gb|AAC77115.1| putative lysyl-tRNA synthetase [Escherichia coli K12]
--- CLUSTER 110 ---
>gi|1573291|gb|AAC21985.1| virulence associated protein C, putative [Haemophilus influenzae Rd]
>gi|1573972|gb|AAC22608.1| virulence associated protein C (vapC) [Haemophilus influenzae Rd]
--- CLUSTER 111 ---
>gi|1573302|gb|AAC21995.1| RNA methyltransferase, putative [Haemophilus influenzae Rd]
>gi|1573862|gb|AAC22505.1| tRNA (uracil-5-)-methyltransferase (trmA) [Haemophilus influenzae Rd]
>gi|1573984|gb|AAC22619.1| RNA methyltransferase, putative [Haemophilus influenzae Rd]
>gi|1787083|gb|AAC73946.1| putative enzyme [Escherichia coli K12]
>gi|1789148|gb|AAC75827.1| putative enzyme [Escherichia coli K12]
>gi|1790403|gb|AAC76947.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli K12]
--- CLUSTER 112 ---
>gi|1573303|gb|AAC21996.1| GTP pyrophosphokinase (relA) [Haemophilus influenzae Rd]
>gi|1574600|gb|AAC23388.1| guanosine-3',5'-bis(diphosphate) 3'- pyrophosphohydrolase (spoT) [Haemophilus influenzae Rd]
>gi|1789147|gb|AAC75826.1| (p)ppGpp synthetase I (GTP pyrophosphokinase); regulation of RNA synthesis; stringent factor [Escherichia coli K12]
>gi|1790082|gb|AAC76674.1| (p)ppGpp synthetase II; also guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase [Escherichia coli K12]
--- CLUSTER 113 --- SPLIT INTO 1566 1567
>gi|1573318|gb|AAC22009.1| cytochrome C-type protein (napC) [Haemophilus influenzae Rd]
>gi|1573642|gb|AAC22304.1| cytochrome C-type protein (yecK) [Haemophilus influenzae Rd]
>gi|1787230|gb|AAC74081.1| trimethylamine N-oxide reductase, cytochrome c-type subunit [Escherichia coli K12]
>gi|1788181|gb|AAC74943.1| putative cytochrome C-type protein [Escherichia coli K12]
>gi|1788530|gb|AAC75262.1| cytochrome c-type protein [Escherichia coli K12]
--- CLUSTER 114 ---
>gi|1573327|gb|AAC22018.1| iron (chelated) ABC transporter, permease protein (yfeD) [Haemophilus influenzae Rd]
>gi|1573328|gb|AAC22019.1| iron (chelated) ABC transporter, permease protein (yfeC) [Haemophilus influenzae Rd]
>gi|1573380|gb|AAC22066.1| conserved hypothetical integral membrane protein [Haemophilus influenzae Rd]
>gi|1788166|gb|AAC74929.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 115 --- SPLIT INTO 1568 1569
>gi|1572983|gb|AAC21715.1| rod shape-determining protein (mreB) [Haemophilus influenzae Rd]
>gi|1573342|gb|AAC22031.1| heat shock protein (hscA) [Haemophilus influenzae Rd]
>gi|1574167|gb|AAC22889.1| heat shock protein 70 (dnaK) [Haemophilus influenzae Rd]
>gi|1786196|gb|AAC73125.1| chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins [Escherichia coli K12]
>gi|1786870|gb|AAC73751.1| putative dnaK protein [Escherichia coli K12]
>gi|1788875|gb|AAC75579.1| heat shock protein, chaperone, member of Hsp70 protein family [Escherichia coli K12]
>gi|1789649|gb|AAC76283.1| regulator of ftsI, penicillin binding protein 3, septation function [Escherichia coli K12]
--- CLUSTER 116 ---
>gi|1573345|gb|AAC22033.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1574579|gb|AAC23369.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786351|gb|AAC73267.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787974|gb|AAC74754.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788877|gb|AAC75581.1| putative regulator [Escherichia coli K12]
--- CLUSTER 117 --- SPLIT INTO 1570 1571
>gi|1573347|gb|AAC22035.1| nifS protein (nifS) [Haemophilus influenzae Rd]
>gi|1574753|gb|AAC22941.1| nifS protein, putative [Haemophilus influenzae Rd]
>gi|1574801|gb|AAC22994.1| H. influenzae predicted coding region HI1343 [Haemophilus influenzae Rd]
>gi|1787970|gb|AAC74750.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788879|gb|AAC75583.1| putative aminotransferase [Escherichia coli K12]
>gi|1789175|gb|AAC75852.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 118 ---
>gi|1788957|gb|AAC75654.1| putative outer membrane protein [Escherichia coli K12]
>gi|1789974|gb|AAC76576.1| putative outer membrane protein [Escherichia coli K12]
--- CLUSTER 119 --- SPLIT INTO 1572 1573
>gi|1574091|gb|AAC22819.1| outer membrane protein P5 (ompA) [Haemophilus influenzae Rd]
>gi|1787191|gb|AAC74043.1| outer membrane protein 3a (II*;G;d) [Escherichia coli K12]
>gi|1789974|gb|AAC76576.1| putative outer membrane protein [Escherichia coli K12]
--- CLUSTER 120 ---
>gi|1573351|gb|AAC22039.1| peptidoglycan-associated outer membrane lipoprotein (pal) [Haemophilus influenzae Rd]
>gi|1574091|gb|AAC22819.1| outer membrane protein P5 (ompA) [Haemophilus influenzae Rd]
>gi|1786962|gb|AAC73835.1| peptidoglycan-associated lipoprotein [Escherichia coli K12]
--- CLUSTER 121 ---
>gi|1573371|gb|AAC22059.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1573632|gb|AAC22295.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788685|gb|AAC75403.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790357|gb|AAC76904.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 122 --- SPLIT INTO 1574 1575 1576
>gi|1573382|gb|AAC22068.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1573707|gb|AAC22363.1| lipoprotein [Haemophilus influenzae Rd]
>gi|1573765|gb|AAC22415.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788162|gb|AAC74926.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789099|gb|AAC75784.1| lipoprotein [Escherichia coli K12]
>gi|1789228|gb|AAC75903.1| putative lipoprotein [Escherichia coli K12]
>gi|1790042|gb|AAC76637.1| putative membrane protein [Escherichia coli K12]
--- CLUSTER 123 ---
>gi|1573386|gb|AAC22072.1| ribonuclease E (rne) [Haemophilus influenzae Rd]
>gi|1574815|gb|AAC23000.1| cytoplasmic axial filament protein (cafA) [Haemophilus influenzae Rd]
>gi|1787325|gb|AAC74168.1| RNase E, membrane attachment, mRNA turnover, maturation 5S RNA [Escherichia coli K12]
>gi|1789645|gb|AAC76279.1| bundles of cytoplasmic filaments [Escherichia coli K12]
--- CLUSTER 124 ---
>gi|1573376|gb|AAC22064.1| pyridoxine kinase, putative [Haemophilus influenzae Rd]
>gi|1573390|gb|AAC22074.1| phosphomethylpyrimidine kinase (thiD) [Haemophilus influenzae Rd]
>gi|1787924|gb|AAC74708.1| pyridoxal kinase 2 / pyridoxine kinase [Escherichia coli K12]
>gi|1788758|gb|AAC75471.1| pyridoxal/pyridoxine/pyridoxamine kinase [Escherichia coli K12]
--- CLUSTER 125 ---
>gi|1573390|gb|AAC22074.1| phosphomethylpyrimidine kinase (thiD) [Haemophilus influenzae Rd]
>gi|1788420|gb|AAC75164.1| phosphomethylpyrimidine kinase [Escherichia coli K12]
--- CLUSTER 126 ---
>gi|1789772|gb|AAC76396.1| putative transport protein [Escherichia coli K12]
>gi|1790167|gb|AAC76752.1| L-glutamine:D-fructose-6-phosphate aminotransferase [Escherichia coli K12]
--- CLUSTER 127 --- SPLIT INTO 1577 1578
>gi|1573404|gb|AAC22088.1| glucosamine--fructose-6-phosphate aminotransferase (glmS) [Haemophilus influenzae Rd]
>gi|1574137|gb|AAC22861.1| amidophosphoribosyltransferase (purF) [Haemophilus influenzae Rd]
>gi|1788651|gb|AAC75372.1| amidophosphoribosyltransferase = PRPP amidotransferase [Escherichia coli K12]
>gi|1789525|gb|AAC76170.1| putative tagatose-6-phosphate aldose/ketose isomerase [Escherichia coli K12]
>gi|1790167|gb|AAC76752.1| L-glutamine:D-fructose-6-phosphate aminotransferase [Escherichia coli K12]
--- CLUSTER 128 ---
>gi|1573405|gb|AAC22089.1| DNA-binding protein HU-alpha (hupA) [Haemophilus influenzae Rd]
>gi|1574152|gb|AAC22874.1| integration host factor, beta-subunit (himD) [Haemophilus influenzae Rd]
>gi|1574771|gb|AAC22959.1| integration host factor, alpha-subunit (himA) [Haemophilus influenzae Rd]
>gi|1786644|gb|AAC73543.1| DNA-binding protein HU-beta, NS1 (HU-1) [Escherichia coli K12]
>gi|1787141|gb|AAC73998.1| integration host factor (IHF), beta subunit; site-specific recombination [Escherichia coli K12]
>gi|1788005|gb|AAC74782.1| integration host factor (IHF), alpha subunit; site specific recombination [Escherichia coli K12]
>gi|1790433|gb|AAC76974.1| DNA-binding protein HU-alpha (HU-2) [Escherichia coli K12]
--- CLUSTER 129 --- SPLIT INTO 1579 1580
>gi|1573416|gb|AAC22099.1| penicillin-binding protein 1A (ponA) [Haemophilus influenzae Rd]
>gi|1573845|gb|AAC22489.1| monofunctional biosynthetic peptidoglycan transglycosylase [Haemophilus influenzae Rd]
>gi|1574581|gb|AAC23371.1| penicillin-binding protein 1B (ponB) [Haemophilus influenzae Rd]
>gi|1786343|gb|AAC73260.1| peptidoglycan synthetase; penicillin-binding protein 1B [Escherichia coli K12]
>gi|1788867|gb|AAC75572.1| putative peptidoglycan enzyme [Escherichia coli K12]
>gi|1789601|gb|AAC76240.1| putative peptidoglycan enzyme [Escherichia coli K12]
>gi|1789799|gb|AAC76421.1| peptidoglycan synthetase; penicillin-binding protein 1A [Escherichia coli K12]
--- CLUSTER 130 --- SPLIT INTO 1581 1582 1583 1584
>gi|1572996|gb|AAC21727.1| 2-dehydro-3-deoxygluconokinase (kdgK) [Haemophilus influenzae Rd]
>gi|1573423|gb|AAC22106.1| 1-phosphofructokinase (fruK) [Haemophilus influenzae Rd]
>gi|1573486|gb|AAC22163.1| ribokinase (rbsK) [Haemophilus influenzae Rd]
>gi|1574367|gb|AAC23172.1| ADP-heptose synthase (rfaE) [Haemophilus influenzae Rd]
>gi|1788017|gb|AAC74793.1| 6-phosphofructokinase II; suppressor of pfkA [Escherichia coli K12]
>gi|1788071|gb|AAC74842.1| putative kinase [Escherichia coli K12]
>gi|1788417|gb|AAC75161.1| putative kinase [Escherichia coli K12]
>gi|1788484|gb|AAC75221.1| putative kinase [Escherichia coli K12]
>gi|1788491|gb|AAC75227.1| putative kinase [Escherichia coli K12]
>gi|1788493|gb|AAC75229.1| fructose-1-phosphate kinase [Escherichia coli K12]
>gi|1789432|gb|AAC76088.1| putative kinase [Escherichia coli K12]
>gi|1789775|gb|AAC76399.1| putative kinase [Escherichia coli K12]
>gi|1789945|gb|AAC76551.1| ketodeoxygluconokinase [Escherichia coli K12]
>gi|1790193|gb|AAC76775.1| ribokinase [Escherichia coli K12]
>gi|1790316|gb|AAD13445.1| putative kinase [Escherichia coli K12]
--- CLUSTER 131 --- SPLIT INTO 1585 1586
>gi|1573422|gb|AAC22105.1| PTS system, fructose-specific IIBC component (fruA) [Haemophilus influenzae Rd]
>gi|1786951|gb|AAC73825.1| protein modification enzyme, induction of ompC [Escherichia coli K12]
>gi|1788492|gb|AAC75228.1| PTS system, fructose-specific transport protein [Escherichia coli K12]
>gi|1788729|gb|AAC75445.1| putative transport protein [Escherichia coli K12]
>gi|1788730|gb|AAC75446.1| putative PTS system enzyme IIB component [Escherichia coli K12]
>gi|1790333|gb|AAC76881.1| PTS system, fructose-like enzyme IIBC component [Escherichia coli K12]
>gi|1790386|gb|AAC76931.1| PTS system, fructose-like enzyme II component [Escherichia coli K12]
>gi|1790387|gb|AAC76932.1| PTS system fructose-like IIB component 1 [Escherichia coli K12]
>gi|1790390|gb|AAC76935.1| PTS system fructose-like IIB component 2 [Escherichia coli K12]
--- CLUSTER 132 --- SPLIT INTO 1587 1588 1589 1590
>gi|1574566|gb|AAC23356.1| PTS system, glucose-specific IIA component (crr) [Haemophilus influenzae Rd]
>gi|1786894|gb|AAC73773.1| PTS system, N-acetylglucosamine-specific enzyme IIABC [Escherichia coli K12]
>gi|1787343|gb|AAC74185.1| PTS system, glucose-specific IIBC component [Escherichia coli K12]
>gi|1787908|gb|AAC74693.1| PTS system, maltose and glucose-specific II ABC [Escherichia coli K12]
>gi|1788757|gb|AAC75470.1| PTS system, glucose-specific IIA component [Escherichia coli K12]
>gi|1788769|gb|AAC75482.1| putative PTS enzyme II [Escherichia coli K12]
>gi|1789069|gb|AAC75757.1| PTS system enzyme II ABC (asc), cryptic, transports specific beta-glucosides [Escherichia coli K12]
>gi|1790116|gb|AAC76705.1| PTS system, arbutin-like IIB component [Escherichia coli K12]
>gi|1790117|gb|AAC76706.1| PTS system, arbutin-like IIC component [Escherichia coli K12]
>gi|1790159|gb|AAC76745.1| PTS system beta-glucosides, enzyme II, cryptic [Escherichia coli K12]
>gi|2367362|gb|AAC77197.1| PTS system enzyme II, trehalose specific [Escherichia coli K12]
--- CLUSTER 133 ---
>gi|1789069|gb|AAC75757.1| PTS system enzyme II ABC (asc), cryptic, transports specific beta-glucosides [Escherichia coli K12]
>gi|1790027|gb|AAC76623.1| PTS system, mannitol-specific enzyme IIABC components [Escherichia coli K12]
--- CLUSTER 134 ---
>gi|1789301|gb|AAC75970.1| PTS system, mannitol-specific enzyme II component, cryptic [Escherichia coli K12]
>gi|1790027|gb|AAC76623.1| PTS system, mannitol-specific enzyme IIABC components [Escherichia coli K12]
--- CLUSTER 135 --- SPLIT INTO 1591 1592 1593 1594 1595 1596 1597 1598
>gi|1573424|gb|AAC22107.1| PTS system, fructose-specific IIA/FPr component (fruB) [Haemophilus influenzae Rd]
>gi|1574703|gb|AAC22802.1| nitrogen regulatory IIA protein (ptsN) [Haemophilus influenzae Rd]
>gi|1574567|gb|AAC23357.1| phosphoenolpyruvate-protein phosphotransferase (ptsI) [Haemophilus influenzae Rd]
>gi|1574568|gb|AAC23358.1| phosphocarrier protein HPr (ptsH) [Haemophilus influenzae Rd]
>gi|1786951|gb|AAC73825.1| protein modification enzyme, induction of ompC [Escherichia coli K12]
>gi|1787448|gb|AAC74282.1| putative PTS system enzyme I [Escherichia coli K12]
>gi|1787994|gb|AAC74772.1| phosphoenolpyruvate synthase [Escherichia coli K12]
>gi|1788494|gb|AAC75230.1| PTS system, fructose-specific IIA/fpr component [Escherichia coli K12]
>gi|1788726|gb|AAC75442.1| putative PTS system enzyme IIA component, enzyme I [Escherichia coli K12]
>gi|1788755|gb|AAC75468.1| PTS system protein HPr [Escherichia coli K12]
>gi|1788756|gb|AAC75469.1| PEP-protein phosphotransferase system enzyme I [Escherichia coli K12]
>gi|1789193|gb|AAC75868.1| PTS system, enzyme I, transcriptional regulator (with NPR and NTR proteins) [Escherichia coli K12]
>gi|1789302|gb|AAC75971.1| PTS system, mannitol-specific enzyme II component, cryptic [Escherichia coli K12]
>gi|1789597|gb|AAC76236.1| phosphotransferase system enzyme IIA, regulates N metabolism [Escherichia coli K12]
>gi|1790027|gb|AAC76623.1| PTS system, mannitol-specific enzyme IIABC components [Escherichia coli K12]
>gi|2367327|gb|AAC76882.1| PTS system, fructose-specific IIA component [Escherichia coli K12]
>gi|1790383|gb|AAC76929.1| PEP-protein phosphotransferase system enzyme I [Escherichia coli K12]
>gi|2367359|gb|AAC77152.1| putative PTS system enzyme II A component [Escherichia coli K12]
>gi|1790755|gb|AAC77258.1| putative PTS system enzyme II A component [Escherichia coli K12]
--- CLUSTER 136 --- SPLIT INTO 1599 1600 1601
>gi|1573429|gb|AAC22113.1| DNA polymerase III, delta' subunit (holB) [Haemophilus influenzae Rd]
>gi|1574159|gb|AAC22882.1| DNA polymerase III, subunits gamma and tau (dnaX) [Haemophilus influenzae Rd]
>gi|1786676|gb|AAC73572.1| DNA polymerase III, tau and gamma subunits; DNA elongation factor III [Escherichia coli K12]
>gi|1787341|gb|AAC74183.1| DNA polymerase III, delta prime subunit [Escherichia coli K12]
--- CLUSTER 137 ---
>gi|1573435|gb|AAC22119.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1574674|gb|AAC22773.1| membrane protein (lapB) [Haemophilus influenzae Rd]
>gi|1787103|gb|AAC73964.1| putative enzyme [Escherichia coli K12]
--- CLUSTER 138 ---
>gi|1573450|gb|AAC22130.1| imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase (hisB) [Haemophilus influenzae Rd]
>gi|1573616|gb|AAC22281.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786399|gb|AAC73311.1| putative phosphatase [Escherichia coli K12]
>gi|1788333|gb|AAC75083.1| imidazoleglycerolphosphate dehydratase and histidinol-phosphate phosphatase [Escherichia coli K12]
--- CLUSTER 139 ---
>gi|1573452|gb|AAC22132.1| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (hisA) [Haemophilus influenzae Rd]
>gi|1573453|gb|AAC22133.1| hisF cyclase (hisF) [Haemophilus influenzae Rd]
>gi|1788335|gb|AAC75085.1| N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'- phosphoribosyl)-4-imidazolecarboxamide isomerase [Escherichia coli K12]
>gi|1788336|gb|AAC75086.1| imidazole glycerol phosphate synthase subunit in heterodimer with HisH = imidazole glycerol phsphate synthase holoenzyme [Escherichia coli K12]
--- CLUSTER 140 --- SPLIT INTO 1602 1603
>gi|1573263|gb|AAC21959.1| transcription termination factor (rho) [Haemophilus influenzae Rd]
>gi|1788251|gb|AAC75008.1| flagellum-specific ATP synthase [Escherichia coli K12]
>gi|1790217|gb|AAC76788.1| transcription termination factor Rho; polarity suppressor [Escherichia coli K12]
--- CLUSTER 141 ---
>gi|1573457|gb|AAC22137.1| ATP synthase F1, subunit beta (atpD) [Haemophilus influenzae Rd]
>gi|1573459|gb|AAC22139.1| ATP synthase F1, subunit alpha (atpA) [Haemophilus influenzae Rd]
>gi|1788251|gb|AAC75008.1| flagellum-specific ATP synthase [Escherichia coli K12]
>gi|1790170|gb|AAC76755.1| membrane-bound ATP synthase, F1 sector, beta-subunit [Escherichia coli K12]
>gi|1790172|gb|AAC76757.1| membrane-bound ATP synthase, F1 sector, alpha-subunit [Escherichia coli K12]
--- CLUSTER 142 --- SPLIT INTO 1604 1605
>gi|1573471|gb|AAC22150.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|3212216|gb|AAC22928.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1574577|gb|AAC23367.1| transposase, putative [Haemophilus influenzae Rd]
>gi|1786451|gb|AAC73360.1| putative transposase [Escherichia coli K12]
>gi|1786490|gb|AAC73402.1| IS3 putative transposase [Escherichia coli K12]
>gi|1786570|gb|AAC73475.1| IS3 putative transposase [Escherichia coli K12]
>gi|1786753|gb|AAC73642.1| IS3 putative transposase [Escherichia coli K12]
>gi|1787263|gb|AAC74111.1| IS3 putative transposase [Escherichia coli K12]
>gi|1788405|gb|AAC75150.1| IS3 putative transposase [Escherichia coli K12]
>gi|1789981|gb|AAC76582.1| IS150 putative transposase [Escherichia coli K12]
>gi|1790737|gb|AAC77241.1| putative transposase [Escherichia coli K12]
--- CLUSTER 143 ---
>gi|1573474|gb|AAC22154.1| heat shock protein (hslU) [Haemophilus influenzae Rd]
>gi|1573717|gb|AAC22372.1| ATP-dependent Clp protease, ATP-binding subunit (clpX) [Haemophilus influenzae Rd]
>gi|1786642|gb|AAC73541.1| ATP-dependent specificity component of clpP serine protease, chaperone [Escherichia coli K12]
>gi|1790366|gb|AAC76913.1| heat shock protein hslVU, ATPase subunit, homologous to chaperones [Escherichia coli K12]
--- CLUSTER 144 --- SPLIT INTO 1606 1607
>gi|1573484|gb|AAC22161.1| D-ribose ABC transporter, permease protein (rbsC) [Haemophilus influenzae Rd]
>gi|1573837|gb|AAC22483.1| galactoside ABC transporter, permease protein (mglC) [Haemophilus influenzae Rd]
>gi|1574663|gb|AAC22763.1| D-xylose ABC transporter, permease protein (xylH) [Haemophilus influenzae Rd]
>gi|1787793|gb|AAC74587.1| putative transport system permease protein [Escherichia coli K12]
>gi|1787794|gb|AAC74588.1| putative transport system permease protein [Escherichia coli K12]
>gi|1788208|gb|AAC74968.1| high-affinity L-arabinose transport system; membrane protein, fragment 2 [Escherichia coli K12]
>gi|1788209|gb|AAC74969.1| high-affinity L-arabinose transport system; membrane protein, fragment 1 [Escherichia coli K12]
>gi|1788471|gb|AAC75209.1| methyl-galactoside transport and galactose taxis [Escherichia coli K12]
>gi|1788896|gb|AAC75599.1| putative transport system permease protein [Escherichia coli K12]
>gi|1789992|gb|AAC76592.1| putative xylose transport, membrane component [Escherichia coli K12]
>gi|1790191|gb|AAC76773.1| D-ribose high-affinity transport system [Escherichia coli K12]
>gi|1790524|gb|AAC77047.1| putative transport system permease protein [Escherichia coli K12]
>gi|1790677|gb|AAC77187.1| putative transport system permease protein [Escherichia coli K12]
>gi|1790678|gb|AAC77188.1| putative transport system permease protein [Escherichia coli K12]
--- CLUSTER 145 ---
>gi|1788030|gb|AAC74805.1| negative transcriptional regulator of cel operon [Escherichia coli K12]
>gi|1790339|gb|AAC76887.1| positive regulator for rhaBAD operon [Escherichia coli K12]
--- CLUSTER 146 --- SPLIT INTO 1608 1609 1610 1611 1612
>gi|1574606|gb|AAC22711.1| transcriptional regulator, araC family, putative [Haemophilus influenzae Rd]
>gi|1786251|gb|AAC73175.1| transcriptional regulator for ara operon [Escherichia coli K12]
>gi|1786491|gb|AAC73403.1| putative ARAC-type regulatory protein [Escherichia coli K12]
>gi|1786496|gb|AAC73408.1| putative ARAC-type regulatory protein [Escherichia coli K12]
>gi|1786758|gb|AAC73647.1| putative ARAC-type regulatory protein [Escherichia coli K12]
>gi|1786776|gb|AAC73665.1| regulatory protein affecting appA and other genes [Escherichia coli K12]
>gi|1786778|gb|AAC73667.1| envelope protein; thermoregulation of porin biosynthesis [Escherichia coli K12]
>gi|1787649|gb|AAC74466.1| regulatory protein for 2-phenylethylamine catabolism [Escherichia coli K12]
>gi|1787776|gb|AAC74572.1| putative ARAC-type regulatory protein [Escherichia coli K12]
>gi|1787811|gb|AAC74604.1| multiple antibiotic resistance; transcriptional activator of defense systems [Escherichia coli K12]
>gi|1787987|gb|AAC74766.1| putative ARAC-type regulatory protein [Escherichia coli K12]
>gi|1788725|gb|AAC75441.1| putative ARAC-type regulatory protein [Escherichia coli K12]
>gi|1789385|gb|AAC76046.1| putative ARAC-type regulatory protein [Escherichia coli K12]
>gi|1789932|gb|AAC76540.1| putative ARAC-type regulatory protein [Escherichia coli K12]
>gi|1789933|gb|AAC76541.1| putative ARAC-type regulatory protein [Escherichia coli K12]
>gi|1789993|gb|AAC76593.1| putative regulator of xyl operon [Escherichia coli K12]
>gi|1790339|gb|AAC76887.1| positive regulator for rhaBAD operon [Escherichia coli K12]
>gi|1790340|gb|AAC76888.1| positive regulator for rhaRS operon [Escherichia coli K12]
>gi|1790391|gb|AAC76936.1| putative ARAC-type regulatory protein [Escherichia coli K12]
>gi|1790497|gb|AAC77032.1| regulation of superoxide response regulon [Escherichia coli K12]
>gi|1790557|gb|AAC77077.1| putative ARAC-type regulatory protein [Escherichia coli K12]
>gi|1790559|gb|AAC77079.1| regulator of melibiose operon [Escherichia coli K12]
>gi|1790857|gb|AAC77349.1| right origin-binding protein [Escherichia coli K12]
--- CLUSTER 147 ---
>gi|1574660|gb|AAC22761.1| xylose operon regluatory protein (xylR) [Haemophilus influenzae Rd]
>gi|1789993|gb|AAC76593.1| putative regulator of xyl operon [Escherichia coli K12]
--- CLUSTER 148 ---
>gi|1574660|gb|AAC22761.1| xylose operon regluatory protein (xylR) [Haemophilus influenzae Rd]
>gi|1787580|gb|AAC74402.1| putative LACI-type transcriptional regulator [Escherichia coli K12]
--- CLUSTER 149 ---
>gi|1788211|gb|AAC74971.1| L-arabinose-binding periplasmic protein [Escherichia coli K12]
>gi|1788473|gb|AAC75211.1| galactose-binding transport protein; receptor for galactose taxis [Escherichia coli K12]
--- CLUSTER 150 ---
>gi|1787228|gb|AAC74079.1| part of regulation of tor operon, periplasmic [Escherichia coli K12]
>gi|1790192|gb|AAC76774.1| D-ribose periplasmic binding protein [Escherichia coli K12]
--- CLUSTER 151 --- SPLIT INTO 1613 1614 1615 1616
>gi|1573485|gb|AAC22162.1| D-ribose ABC transporter, periplasmic-binding protein (rbsB) [Haemophilus influenzae Rd]
>gi|1573487|gb|AAC22164.1| rbs repressor (rbsR) [Haemophilus influenzae Rd]
>gi|1573834|gb|AAC22480.1| galactose operon repressor (galR) [Haemophilus influenzae Rd]
>gi|1573835|gb|AAC22481.1| galactose ABC transporter, periplasmic-binding protein (mglB) [Haemophilus influenzae Rd]
>gi|1574665|gb|AAC22765.1| D-xylose ABC transporter, periplasmic-binding protein (xylF) [Haemophilus influenzae Rd]
>gi|1574481|gb|AAC23280.1| purine nucleotide synthesis repressor (purR) [Haemophilus influenzae Rd]
>gi|1786268|gb|AAC73191.1| transcriptional repressor of fru operon and others [Escherichia coli K12]
>gi|1786540|gb|AAC73448.1| transcriptional repressor of the lac operon [Escherichia coli K12]
>gi|1787580|gb|AAC74402.1| putative LACI-type transcriptional regulator [Escherichia coli K12]
>gi|1787795|gb|AAC74589.1| putative LACI-type transcriptional regulator [Escherichia coli K12]
>gi|1787906|gb|AAC74692.1| repressor of malX and Y genes [Escherichia coli K12]
>gi|1787948|gb|AAC74730.1| transcriptional repressor for pur regulon, glyA, glnB, prsA, speA [Escherichia coli K12]
>gi|1788473|gb|AAC75211.1| galactose-binding transport protein; receptor for galactose taxis [Escherichia coli K12]
>gi|1788474|gb|AAC75212.1| mgl repressor, galactose operon inducer [Escherichia coli K12]
>gi|1788898|gb|AAC75601.1| putative LACI-type transcriptional regulator [Escherichia coli K12]
>gi|1789068|gb|AAC75756.1| ascBF operon repressor [Escherichia coli K12]
>gi|1789202|gb|AAC75876.1| repressor of galETK operon [Escherichia coli K12]
>gi|1789456|gb|AAC76110.1| regulator of ebg operon [Escherichia coli K12]
>gi|1789846|gb|AAC76463.1| regulator of gluconate (gnt) operon [Escherichia coli K12]
>gi|1789990|gb|AAC76590.1| xylose binding protein transport system [Escherichia coli K12]
>gi|1790192|gb|AAC76774.1| D-ribose periplasmic binding protein [Escherichia coli K12]
>gi|1790194|gb|AAC76776.1| regulator for rbs operon [Escherichia coli K12]
>gi|1790369|gb|AAC76916.1| regulator for deo operon, udp, cdd, tsx, nupC, and nupG [Escherichia coli K12]
>gi|1790526|gb|AAC77049.1| putative LACI-type transcriptional regulator [Escherichia coli K12]
>gi|1790674|gb|AAC77184.1| putative LACI-type transcriptional regulator [Escherichia coli K12]
>gi|1790689|gb|AAC77198.1| repressor of treA,B,C [Escherichia coli K12]
>gi|1790715|gb|AAC77221.1| L-idonate transcriptional regulator [Escherichia coli K12]
--- CLUSTER 152 ---
>gi|1573518|gb|AAC22191.1| aspartate ammonia-lyase (aspA) [Haemophilus influenzae Rd]
>gi|1574234|gb|AAC23045.1| fumarate hydratase, class II (fumC) [Haemophilus influenzae Rd]
>gi|1787896|gb|AAC74683.1| fumarase C= fumarate hydratase Class II; isozyme [Escherichia coli K12]
>gi|1790581|gb|AAC77099.1| aspartate ammonia-lyase (aspartase) [Escherichia coli K12]
--- CLUSTER 153 ---
>gi|1573823|gb|AAC22470.1| argininosuccinate lyase (argH) [Haemophilus influenzae Rd]
>gi|1790398|gb|AAC76942.1| argininosuccinate lyase [Escherichia coli K12]
--- CLUSTER 154 ---
>gi|1573518|gb|AAC22191.1| aspartate ammonia-lyase (aspA) [Haemophilus influenzae Rd]
>gi|1790398|gb|AAC76942.1| argininosuccinate lyase [Escherichia coli K12]
--- CLUSTER 155 ---
>gi|1573535|gb|AAC22208.1| lipooligosaccharide biosynthesis protein [Haemophilus influenzae Rd]
>gi|1573773|gb|AAC22423.1| lipooligosaccharide biosynthesis protein [Haemophilus influenzae Rd]
--- CLUSTER 156 ---
>gi|1573544|gb|AAC22214.1| sulfite synthesis pathway protein (cysQ) [Haemophilus influenzae Rd]
>gi|1573958|gb|AAC22595.1| extragenic suppressor (suhB) [Haemophilus influenzae Rd]
>gi|1788882|gb|AAC75586.1| enhances synthesis of sigma32 in mutant; extragenic suppressor, may modulate RNAse III lethal action [Escherichia coli K12]
>gi|1790659|gb|AAC77171.1| affects pool of 3'-phosphoadenosine-5'-phosphosulfate in pathway of sulfite synthesis [Escherichia coli K12]
--- CLUSTER 157 ---
>gi|1573554|gb|AAC22225.1| DNA gyrase, subunit B (gyrB) [Haemophilus influenzae Rd]
>gi|1574369|gb|AAC23174.1| topoisomerase IV, subunit B (parE) [Haemophilus influenzae Rd]
>gi|1789408|gb|AAC76066.1| DNA topoisomerase IV subunit B [Escherichia coli K12]
>gi|1790134|gb|AAC76722.1| DNA gyrase subunit B, type II topoisomerase, ATPase activity [Escherichia coli K12]
--- CLUSTER 158 ---
>gi|1573193|gb|AAC21898.1| polynucleotide phosphorylase (pnp) [Haemophilus influenzae Rd]
>gi|1789555|gb|AAC76198.1| polynucleotide phosphorylase; cytidylate kinase activity [Escherichia coli K12]
--- CLUSTER 159 --- SPLIT INTO 1617 1618
>gi|1573555|gb|AAC22226.1| transcription accessory protein (tex) [Haemophilus influenzae Rd]
>gi|1574150|gb|AAC22873.1| ribosomal protein S1 (rpS1) [Haemophilus influenzae Rd]
>gi|1787140|gb|AAC73997.1| 30S ribosomal subunit protein S1 [Escherichia coli K12]
>gi|1789555|gb|AAC76198.1| polynucleotide phosphorylase; cytidylate kinase activity [Escherichia coli K12]
>gi|1789811|gb|AAC76432.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 160 ---
>gi|1573556|gb|AAC22227.1| transcription elongation factor (greB) [Haemophilus influenzae Rd]
>gi|1574790|gb|AAC22976.1| transcription elongation factor (greA) [Haemophilus influenzae Rd]
>gi|1789571|gb|AAC76213.1| transcription elongation factor: cleaves 3' nucleotide of paused mRNA [Escherichia coli K12]
>gi|1789810|gb|AAC76431.1| transcription elongation factor and transcript cleavage [Escherichia coli K12]
--- CLUSTER 161 --- SPLIT INTO 1619 1620 1621 1622
>gi|1573558|gb|AAC22229.1| hydrogen peroxide-inducible genes activator (oxyR) [Haemophilus influenzae Rd]
>gi|1573681|gb|AAC22340.1| transcriptional activator (ilvY) [Haemophilus influenzae Rd]
>gi|1573785|gb|AAC22434.1| transcriptional regulator [Haemophilus influenzae Rd]
>gi|1574123|gb|AAC22848.1| glycine cleavage system transcriptional activator (gcvA) [Haemophilus influenzae Rd]
>gi|1574129|gb|AAC22854.1| cys regulon transcriptional activator (cysB) [Haemophilus influenzae Rd]
>gi|1574196|gb|AAC23011.1| transcriptional regulator, putative [Haemophilus influenzae Rd]
>gi|1574593|gb|AAC23383.1| transcriptional activator (metR) [Haemophilus influenzae Rd]
>gi|1786202|gb|AAC73131.1| transcriptional activator of nhaA [Escherichia coli K12]
>gi|1786264|gb|AAC73187.1| probable transcriptional activator for leuABCD operon [Escherichia coli K12]
>gi|1786401|gb|AAC73313.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1786448|gb|AAC73357.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1786476|gb|AAC73385.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1786508|gb|AAC73419.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1786533|gb|AAC73441.1| cyn operon positive regulator [Escherichia coli K12]
>gi|1786713|gb|AAC73606.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1786820|gb|AAC73704.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1786847|gb|AAC73730.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1786984|gb|AAC73855.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1787128|gb|AAC73986.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1787530|gb|AAC74357.1| positive transcriptional regulator for cysteine regulon [Escherichia coli K12]
>gi|1787589|gb|AAC74410.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1787601|gb|AAC74421.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1787691|gb|AAC74504.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1787806|gb|AAC74599.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1787879|gb|AAC74667.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1787949|gb|AAC74731.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1788100|gb|AAC74869.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1788296|gb|AAC75049.1| transcriptional regulator cys regulon; accessory regulatory circuit affecting cysM [Escherichia coli K12]
>gi|1788297|gb|AAC75050.1| nitrogen assimilation control protein [Escherichia coli K12]
>gi|1788326|gb|AAC75076.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1788481|gb|AAC75218.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1788626|gb|AAC75349.1| NADH dehydrogenase transcriptional regulator, LysR family [Escherichia coli K12]
>gi|1788706|gb|AAC75423.1| D-serine dehydratase (deaminase) transcriptional activator [Escherichia coli K12]
>gi|2367136|gb|AAC75458.1| regulator for xapA [Escherichia coli K12]
>gi|1788748|gb|AAC75462.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1788887|gb|AAC75590.1| transcriptional activator of hca cluster [Escherichia coli K12]
>gi|1788931|gb|AAC75630.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1789173|gb|AAC75850.1| positive regulator of gcv operon [Escherichia coli K12]
>gi|1789204|gb|AAC75878.1| positive regulator for lys [Escherichia coli K12]
>gi|1789283|gb|AAC75953.1| replication initiation inhibitor, binds to 13-mers at oriC [Escherichia coli K12]
>gi|1789288|gb|AAC75958.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1789440|gb|AAC76096.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1789492|gb|AAC76140.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1789506|gb|AAC76153.1| transcriptional activator of tdc operon [Escherichia coli K12]
>gi|1789639|gb|AAC76275.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1789938|gb|AAC76546.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1790011|gb|AAC76609.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1790147|gb|AAC76734.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
>gi|1790199|gb|AAC77484.1| regulator of pssA [Escherichia coli K12]
>gi|1790208|gb|AAC77493.1| positive regulator for ilvC [Escherichia coli K12]
>gi|1790262|gb|AAC76831.1| regulator for metE and metH [Escherichia coli K12]
>gi|1790399|gb|AAC76943.1| activator, hydrogen peroxide-inducible genes [Escherichia coli K12]
>gi|1790783|gb|AAC77283.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
--- CLUSTER 162 ---
>gi|1573579|gb|AAC22246.1| sigma factor regulatory protein, putative [Haemophilus influenzae Rd]
>gi|1573864|gb|AAC22507.1| sigma-E factor regulatory protein, putative [Haemophilus influenzae Rd]
>gi|1788923|gb|AAC75623.1| sigma-E factor, negative regulatory protein [Escherichia coli K12]
--- CLUSTER 163 ---
>gi|1573600|gb|AAC22266.1| shikimate 5-dehydrogenase-related protein [Haemophilus influenzae Rd]
>gi|1573654|gb|AAC22314.1| shikimate 5-dehydrogenase (aroE) [Haemophilus influenzae Rd]
>gi|1787983|gb|AAC74762.1| putative oxidoreductase [Escherichia coli K12]
>gi|1789675|gb|AAC76306.1| dehydroshikimate reductase [Escherichia coli K12]
--- CLUSTER 164 --- SPLIT INTO 1623 1624 1625
>gi|1573604|gb|AAC22270.1| L-fuculose phosphate aldolase (fucA) [Haemophilus influenzae Rd]
>gi|1574044|gb|AAC22673.1| sugar isomerase, putative [Haemophilus influenzae Rd]
>gi|1574057|gb|AAC22685.1| L-ribulose-5-phosphate 4-epimerase (araD) [Haemophilus influenzae Rd]
>gi|1786247|gb|AAC73172.1| L-ribulose-5-phosphate 4-epimerase [Escherichia coli K12]
>gi|1789094|gb|AAC75780.1| putative epimerase/aldolase [Escherichia coli K12]
>gi|1789164|gb|AAC75842.1| L-fuculose-1-phosphate aldolase [Escherichia coli K12]
>gi|1790008|gb|AAC76607.1| putative epimerase/aldolase [Escherichia coli K12]
>gi|1790642|gb|AAC77155.1| putative epimerase/aldolase [Escherichia coli K12]
--- CLUSTER 165 ---
>gi|1573606|gb|AAC22272.1| fuculokinase (fucK) [Haemophilus influenzae Rd]
>gi|1573695|gb|AAC22351.1| glycerol kinase (glpK) [Haemophilus influenzae Rd]
>gi|1574059|gb|AAC22687.1| L-xylulose kinase (lyx) [Haemophilus influenzae Rd]
>gi|1574667|gb|AAC22767.1| xylulose kinase [Haemophilus influenzae Rd]
>gi|1787789|gb|AAC74584.1| putative kinase [Escherichia coli K12]
>gi|1789138|gb|AAC75818.1| putative kinase [Escherichia coli K12]
>gi|1789168|gb|AAC75845.1| L-fuculokinase [Escherichia coli K12]
>gi|1789987|gb|AAC76588.1| xylulokinase [Escherichia coli K12]
>gi|1790005|gb|AAC76604.1| L-xylulose kinase, cryptic [Escherichia coli K12]
>gi|1790338|gb|AAC76886.1| rhamnulokinase [Escherichia coli K12]
>gi|1790361|gb|AAC76908.1| glycerol kinase [Escherichia coli K12]
--- CLUSTER 166 --- SPLIT INTO 1626 1627
>gi|1573609|gb|AAC22274.1| L-fucose operon activator (fucR) [Haemophilus influenzae Rd]
>gi|1573613|gb|AAC22278.1| glycerol-3-phosphate regulon repressor (glpR) [Haemophilus influenzae Rd]
>gi|1574039|gb|AAC22670.1| glycerol-3-phosphate regulon repressor (glpR) [Haemophilus influenzae Rd]
>gi|1787063|gb|AAC73927.1| transcriptional repressor for deo operon, tsx, nupG [Escherichia coli K12]
>gi|1787540|gb|AAC74366.1| putative DEOR-type transcriptional regulator [Escherichia coli K12]
>gi|1788069|gb|AAC74840.1| putative DEOR-type transcriptional regulator [Escherichia coli K12]
>gi|1788403|gb|AAC75148.1| split galactitol utilization operon repressor, interrupted [Escherichia coli K12]
>gi|1788406|gb|AAC75151.1| split galactitol utilization operon repressor, fragment 2 [Escherichia coli K12]
>gi|1789059|gb|AAC75749.1| regulator for gut (srl), glucitol operon [Escherichia coli K12]
>gi|1789091|gb|AAC75777.1| putative DEOR-type transcriptional regulator [Escherichia coli K12]
>gi|1789170|gb|AAC75847.1| positive regulator of the fuc operon [Escherichia coli K12]
>gi|1789519|gb|AAC76165.1| putative DEOR-type transcriptional regulator of aga operon [Escherichia coli K12]
>gi|1789829|gb|AAC76448.1| repressor of the glp operon [Escherichia coli K12]
>gi|1790317|gb|AAD13446.1| putative DEOR-type transcriptional regulator [Escherichia coli K12]
>gi|1790635|gb|AAC77148.1| putative DEOR-type transcriptional regulator [Escherichia coli K12]
>gi|1790753|gb|AAC77256.1| putative DEOR-type transcriptional regulator [Escherichia coli K12]
--- CLUSTER 167 ---
>gi|1573624|gb|AAC22288.1| RNA polymerase sigma-E factor (rpoE) [Haemophilus influenzae Rd]
>gi|1574301|gb|AAC23107.1| sigma factor, putative [Haemophilus influenzae Rd]
>gi|1788926|gb|AAC75626.1| RNA polymerase, sigma-E factor; heat shock and oxidative stress [Escherichia coli K12]
--- CLUSTER 168 ---
>gi|1787477|gb|AAC74308.1| nitrate reductase 1, alpha subunit [Escherichia coli K12]
>gi|1787741|gb|AAC74550.1| cryptic nitrate reductase 2, alpha subunit [Escherichia coli K12]
--- CLUSTER 169 ---
>gi|1787741|gb|AAC74550.1| cryptic nitrate reductase 2, alpha subunit [Escherichia coli K12]
>gi|1787870|gb|AAC74659.1| putative oxidoreductase, major subunit [Escherichia coli K12]
--- CLUSTER 170 --- SPLIT INTO 1628 1629
>gi|1573641|gb|AAC22303.1| biotin sulfoxide reductase (bisC) [Haemophilus influenzae Rd]
>gi|1574081|gb|AAC22706.1| anaerobic dimethyl sulfoxide reductase, chain A (dmsA) [Haemophilus influenzae Rd]
>gi|1787121|gb|AAC73980.1| anaerobic dimethyl sulfoxide reductase subunit A [Escherichia coli K12]
>gi|1787231|gb|AAC74082.1| trimethylamine N-oxide reductase subunit [Escherichia coli K12]
>gi|3868719|gb|AAD13438.1| formate dehydrogenase-N, nitrate-inducible, alpha subunit [Escherichia coli K12]
>gi|1787778|gb|AAC74574.1| putative oxidoreductase, major subunit [Escherichia coli K12]
>gi|1787870|gb|AAC74659.1| putative oxidoreductase, major subunit [Escherichia coli K12]
>gi|1787871|gb|AAC74660.1| putative oxidoreductase, major subunit [Escherichia coli K12]
>gi|1788180|gb|AAC74942.1| biotin sulfoxide reductase 2 [Escherichia coli K12]
>gi|1788534|gb|AAC75266.1| probable nitrate reductase 3 [Escherichia coli K12]
>gi|1789973|gb|AAC76575.1| biotin sulfoxide reductase [Escherichia coli K12]
>gi|3868720|gb|AAD13456.1| formate dehydrogenase-O, major subunit [Escherichia coli K12]
>gi|3868721|gb|AAD13462.1| selenopolypeptide subunit of formate dehydrogenase H [Escherichia coli K12]
--- CLUSTER 171 --- SPLIT INTO 1630 1631 1632 1633
>gi|1573648|gb|AAC22309.1| ATP-dependent DNA helicase (rep) [Haemophilus influenzae Rd]
>gi|1574115|gb|AAC22841.1| DNA helicase II (uvrD) [Haemophilus influenzae Rd]
>gi|1574781|gb|AAC22966.1| exodeoxyribonuclease V, beta chain (recB) [Haemophilus influenzae Rd]
>gi|1787196|gb|AAC74048.1| DNA helicase IV [Escherichia coli K12]
>gi|1789183|gb|AAC75859.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Escherichia coli K12]
>gi|1790212|gb|AAC76783.1| rep helicase, a single-stranded DNA dependent ATPase [Escherichia coli K12]
>gi|2367296|gb|AAC76816.1| DNA-dependent ATPase I and helicase II [Escherichia coli K12]
--- CLUSTER 172 ---
>gi|1573682|gb|AAC22334.1| xanthine-guanine phosphoribosyltransferase (gptA) [Haemophilus influenzae Rd]
>gi|1573693|gb|AAC22352.1| xanthine-guanine phosphoribosyltransferase (gptB) [Haemophilus influenzae Rd]
>gi|1786433|gb|AAC73342.1| guanine-hypoxanthine phosphoribosyltransferase [Escherichia coli K12]
--- CLUSTER 173 --- SPLIT INTO 1634 1635
>gi|1573685|gb|AAC22343.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit C (glpC) [Haemophilus influenzae Rd]
>gi|1574090|gb|AAC22818.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786497|gb|AAC73409.1| putative dehydrogenase subunit [Escherichia coli K12]
>gi|1787977|gb|AAC74757.1| putative oxidase [Escherichia coli K12]
>gi|1788576|gb|AAC75303.1| sn-glycerol-3-phosphate dehydrogenase (anaerobic), K-small subunit [Escherichia coli K12]
>gi|2367159|gb|AAC75815.1| putative oxidoreductase subunit [Escherichia coli K12]
>gi|1789350|gb|AAC76014.1| glycolate oxidase iron-sulfur subunit [Escherichia coli K12]
>gi|1789351|gb|AAC76015.1| glycolate oxidase subunit D [Escherichia coli K12]
--- CLUSTER 174 ---
>gi|1573694|gb|AAC22350.1| glycerol uptake facilitator protein (glpF) [Haemophilus influenzae Rd]
>gi|3212209|gb|AAC22677.1| glycerol uptake facilitator protein (glpF) [Haemophilus influenzae Rd]
>gi|1787101|gb|AAC73962.1| transmembrane water channel; aquaporin Z [Escherichia coli K12]
>gi|1790362|gb|AAC76909.1| facilitated diffusion of glycerol [Escherichia coli K12]
--- CLUSTER 175 --- SPLIT INTO 1636 1637
>gi|1573697|gb|AAC22354.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1574128|gb|AAC22853.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1574175|gb|AAC22895.1| 16s pseudouridylate 516 synthase (rsuA) [Haemophilus influenzae Rd]
>gi|1787380|gb|AAC74219.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787524|gb|AAC74351.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788510|gb|AAC75244.1| 16S pseudouridylate 516 synthase [Escherichia coli K12]
>gi|1790453|gb|AAC76992.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 176 --- SPLIT INTO 1638 1639
>gi|1573733|gb|AAC22388.1| prolyl-tRNA synthetase (proS) [Haemophilus influenzae Rd]
>gi|1574199|gb|AAC23014.1| threonyl-tRNA synthetase (thrS) [Haemophilus influenzae Rd]
>gi|1786392|gb|AAC73305.1| proline tRNA synthetase [Escherichia coli K12]
>gi|1788013|gb|AAC74789.1| threonine tRNA synthetase [Escherichia coli K12]
--- CLUSTER 177 ---
>gi|1573742|gb|AAC22395.1| sodium-dependent transporter, putative [Haemophilus influenzae Rd]
>gi|1574543|gb|AAC23336.1| sodium-dependent transporter, putative [Haemophilus influenzae Rd]
--- CLUSTER 178 --- SPLIT INTO 1640 1641 1642
>gi|1573743|gb|AAC22396.1| acetohydroxy acid synthase II, putative [Haemophilus influenzae Rd]
>gi|1574426|gb|AAC23233.1| acetolactate synthase III large subunit (ilvI) [Haemophilus influenzae Rd]
>gi|1786265|gb|AAC73188.1| acetolactate synthase III, valine sensitive, large subunit [Escherichia coli K12]
>gi|1786717|gb|AAC73609.1| glyoxylate carboligase [Escherichia coli K12]
>gi|1787096|gb|AAC73958.1| pyruvate oxidase [Escherichia coli K12]
>gi|1788716|gb|AAC75432.1| putative enzyme [Escherichia coli K12]
>gi|1790104|gb|AAC76694.1| acetolactate synthase I,valine-sensitive, large subunit [Escherichia coli K12]
>gi|1790203|gb|AAC77488.1| acetolactate synthase II, large subunit, cryptic, interrupted [Escherichia coli K12]
--- CLUSTER 179 --- SPLIT INTO 1643 1644
>gi|1573768|gb|AAC22418.1| A/G-specific adenine glycosylase (mutY) [Haemophilus influenzae Rd]
>gi|1574542|gb|AAC23335.1| endonuclease III (nth) [Haemophilus influenzae Rd]
>gi|1787920|gb|AAC74705.1| endonuclease III; specific for apurinic and/or apyrimidinic sites [Escherichia coli K12]
>gi|1789331|gb|AAC75998.1| adenine glycosylase; G.C --> T.A transversions [Escherichia coli K12]
--- CLUSTER 180 ---
>gi|1788546|gb|AAC75277.1| positive response regulator for colanic capsule biosynthesis, (sensor, RcsC) [Escherichia coli K12]
>gi|1790828|gb|AAC77322.1| 2-component transcriptional regulator [Escherichia coli K12]
--- CLUSTER 181 ---
>gi|1786837|gb|AAC73720.1| putative sensor-type protein [Escherichia coli K12]
>gi|1790567|gb|AAC77086.1| putative 2-component sensor protein [Escherichia coli K12]
--- CLUSTER 182 --- SPLIT INTO 1645 1646 1647 1648 1649
>gi|1573383|gb|AAC22069.1| transcriptional regulatory protein (tyrR) [Haemophilus influenzae Rd]
>gi|1573730|gb|AAC22384.1| nitrate/nitrite response regulator protein (narP) [Haemophilus influenzae Rd]
>gi|1573851|gb|AAC22495.1| response regulator (cpxR) [Haemophilus influenzae Rd]
>gi|1573901|gb|AAC22542.1| aerobic respiration control protein ARCA (arcA) [Haemophilus influenzae Rd]
>gi|1574212|gb|AAC23024.1| phosphate regulon sensor protein (phoR) [Haemophilus influenzae Rd]
>gi|1574213|gb|AAC23025.1| phosphate regulon transcriptional regulatory protein (phoB) [Haemophilus influenzae Rd]
>gi|1574561|gb|AAC23353.1| sensor protein (ygiY) [Haemophilus influenzae Rd]
>gi|1574562|gb|AAC23354.1| transcriptional regulatory protein (ygiX) [Haemophilus influenzae Rd]
>gi|1786524|gb|AAC73433.1| regulator for prp operon [Escherichia coli K12]
>gi|1786599|gb|AAC73502.1| positive response regulator for pho regulon, sensor is PhoR (or CreC) [Escherichia coli K12]
>gi|1786600|gb|AAC73503.1| positive and negative sensor protein for pho regulon [Escherichia coli K12]
>gi|1786747|gb|AAC73637.1| fimbrial Z protein; probable signal transducer [Escherichia coli K12]
>gi|1786783|gb|AAC73671.1| putative 2-component sensor protein [Escherichia coli K12]
>gi|1786784|gb|AAC73672.1| putative 2-component transcriptional regulator [Escherichia coli K12]
>gi|1786838|gb|AAC73721.1| sequence similarity to Shigella regulator [Escherichia coli K12]
>gi|1786911|gb|AAC73788.1| regulator of kdp operon (transcriptional effector) [Escherichia coli K12]
>gi|1786912|gb|AAC73789.1| sensor for high-affinity potassium transport system [Escherichia coli K12]
>gi|1787227|gb|AAC74078.1| sensor protein torS (regulator TorR) [Escherichia coli K12]
>gi|1787229|gb|AAC74080.1| response transcriptional regulator for torA (sensor TorS) [Escherichia coli K12]
>gi|1787277|gb|AAC74124.1| putative 2-component transcriptional regulator for 2nd curli operon [Escherichia coli K12]
>gi|1787374|gb|AAC74213.1| sensor protein PhoQ [Escherichia coli K12]
>gi|1787375|gb|AAC74214.1| transcriptional regulatory protein [Escherichia coli K12]
>gi|1787451|gb|AAC74285.1| putative sensor-type regulator [Escherichia coli K12]
>gi|1787473|gb|AAC74305.1| pleiotrophic regulation of anaerobic respiration: response regulator for nar, frd, dms and tor genes [Escherichia coli K12]
>gi|1787487|gb|AAC74317.1| Hnr protein [Escherichia coli K12]
>gi|1787561|gb|AAC74385.1| psp operon transcriptional activator [Escherichia coli K12]
>gi|1787583|gb|AAC74405.1| transcriptional regulation of aroF, aroG, tyrA and aromatic amino acid transport [Escherichia coli K12]
>gi|1787893|gb|AAC74680.1| response transcriptional regulatory protein (RstB sensor) [Escherichia coli K12]
>gi|1787894|gb|AAC74681.1| sensor histidine protein kinase (RstA regulator) [Escherichia coli K12]
>gi|1788191|gb|AAC74952.1| chemotaxis regulator transmits chemoreceptor signals to flagelllar motor components [Escherichia coli K12]
>gi|1788192|gb|AAC74953.1| response regulator for chemotaxis (cheA sensor); protein methylesterase [Escherichia coli K12]
>gi|1788222|gb|AAC74981.1| putative 2-component transcriptional regulator [Escherichia coli K12]
>gi|1788279|gb|AAC75034.1| putative 2-component sensor protein [Escherichia coli K12]
>gi|1788280|gb|AAC75035.1| putative 2-component transcriptional regulator [Escherichia coli K12]
>gi|1788393|gb|AAC75139.1| sensor protein (for BaeR) [Escherichia coli K12]
>gi|1788394|gb|AAC75140.1| transcriptional response regulatory protein (sensor BaeS) [Escherichia coli K12]
>gi|2367130|gb|AAC75186.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788521|gb|AAC75253.1| nitrate/nitrite response regulator (sensor NarQ) [Escherichia coli K12]
>gi|1788545|gb|AAC75276.1| putative 2-component sensor protein [Escherichia coli K12]
>gi|1788546|gb|AAC75277.1| positive response regulator for colanic capsule biosynthesis, (sensor, RcsC) [Escherichia coli K12]
>gi|1788548|gb|AAC75278.1| sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB [Escherichia coli K12]
>gi|1788549|gb|AAC75279.1| sensor protein AtoS for response regulator AtoC [Escherichia coli K12]
>gi|1788550|gb|AAC75280.1| response regulator of ato, ornithine decarboxylase antizyme (sensor ATOS) [Escherichia coli K12]
>gi|1788712|gb|AAC75428.1| putative positive transcription regulator (sensor EvgS) [Escherichia coli K12]
>gi|1788713|gb|AAC75429.1| putative sensor for regulator EvgA [Escherichia coli K12]
>gi|1788724|gb|AAC75440.1| putative 2-component transcriptional regulator [Escherichia coli K12]
>gi|1788836|gb|AAC75544.1| putative 2-component regulator, interaction with sigma 54 [Escherichia coli K12]
>gi|1788905|gb|AAC75607.1| putative 2-component transcriptional regulator [Escherichia coli K12]
>gi|1788908|gb|AAC75609.1| putative 2-component sensor protein [Escherichia coli K12]
>gi|2367150|gb|AAC75751.1| putative 2-component transcriptional regulator [Escherichia coli K12]
>gi|1789087|gb|AAC75773.1| formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operons [Escherichia coli K12]
>gi|1789149|gb|AAC75828.1| sensor-regulator, activates OmpR by phophorylation [Escherichia coli K12]
>gi|1789219|gb|AAC75894.1| putative 2-component transcriptional regulator [Escherichia coli K12]
>gi|1789233|gb|AAC75907.1| putative transcriptional regulator [Escherichia coli K12]
>gi|1789402|gb|AAC76061.1| putative 2-component transcriptional regulator [Escherichia coli K12]
>gi|1789403|gb|AAC76062.1| putative 2-component sensor protein [Escherichia coli K12]
>gi|1789603|gb|AAC76242.1| aerobic respiration sensor-response protein; histidine protein kinase/phosphatase, sensor for arcA [Escherichia coli K12]
>gi|1789808|gb|AAC76429.1| protein histidine kinase/phosphatase sensor for OmpR, modulates expression of ompF and ompC [Escherichia coli K12]
>gi|1789809|gb|AAC76430.1| response regulator (sensor, EnvZ) affecting transcription of ompC and ompF: outer membrane protein synthesis [Escherichia coli K12]
>gi|1789828|gb|AAC76447.1| putative 2-component regulator [Escherichia coli K12]
>gi|1789937|gb|AAC76545.1| putative regulator [Escherichia coli K12]
>gi|1790102|gb|AAC76692.1| response regulator, positive activator of uhpT transcription (sensor, uhpB) [Escherichia coli K12]
>gi|1790299|gb|AAC76865.1| response regulator for gln (sensor glnL) (nitrogen regulator I, NRI) [Escherichia coli K12]
>gi|1790300|gb|AAC76866.1| histidine protein kinase sensor for GlnG regulator (nitrogen regulator II, NRII) [Escherichia coli K12]
>gi|1790346|gb|AAC76893.1| probable sensor protein (histidine protein kinase), acting on arcA [Escherichia coli K12]
>gi|2367329|gb|AAC76894.1| transcriptional regulator in 2-component system [Escherichia coli K12]
>gi|1790436|gb|AAC76977.1| sensor kinase for HydG, hydrogenase 3 activity [Escherichia coli K12]
>gi|1790437|gb|AAC76978.1| response regulator of hydrogenase 3 activity (sensor HydH) [Escherichia coli K12]
>gi|1790551|gb|AAC77073.1| sensor protein for basR [Escherichia coli K12]
>gi|1790552|gb|AAC77074.1| transcriptional regulatory protein, member of 2-component regulatory system, [Escherichia coli K12]
>gi|1790566|gb|AAC77085.1| putative 2-component transcriptional regulator [Escherichia coli K12]
>gi|1790567|gb|AAC77086.1| putative 2-component sensor protein [Escherichia coli K12]
>gi|1790860|gb|AAC77351.1| catabolic regulation response regulator [Escherichia coli K12]
>gi|1790861|gb|AAC77352.1| catabolite repression sensor kinase for PhoB; alternative sensor for pho regulon [Escherichia coli K12]
>gi|1790863|gb|AAC77354.1| negative response regulator of genes in aerobic pathways, (sensors, ArcB and CpxA) [Escherichia coli K12]
--- CLUSTER 183 ---
>gi|1573876|gb|AAC22520.1| virulence-associated protein (vacB) [Haemophilus influenzae Rd]
>gi|1574590|gb|AAC23378.1| exoribonuclease II (rnb) [Haemophilus influenzae Rd]
>gi|1787542|gb|AAC74368.1| RNase II, mRNA degradation [Escherichia coli K12]
>gi|1790622|gb|AAC77136.1| putative enzyme [Escherichia coli K12]
--- CLUSTER 184 ---
>gi|1573884|gb|AAC22525.1| lipopolysaccharide biosynthesis protein, putative [Haemophilus influenzae Rd]
>gi|1574552|gb|AAC23346.1| lipopolysaccharide biosynthesis protein, putative [Haemophilus influenzae Rd]
--- CLUSTER 185 ---
>gi|1788588|gb|AAC75314.1| putative sugar transferase [Escherichia coli K12]
>gi|1788692|gb|AAC75410.1| putative glycan biosynthesis enzyme [Escherichia coli K12]
--- CLUSTER 186 ---
>gi|1787259|gb|AAC74107.1| orf, hypothetical protein [Escherichia coli K12]
>gi|2367240|gb|AAC76558.1| putative cellulose synthase [Escherichia coli K12]
--- CLUSTER 187 --- SPLIT INTO 1650 1651 1652
>gi|1573885|gb|AAC22526.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1574422|gb|AAC23227.1| glycosyl transferase, putative [Haemophilus influenzae Rd]
>gi|1574548|gb|AAC23341.1| lipopolysaccharide biosynthesis protein, putative [Haemophilus influenzae Rd]
>gi|1574549|gb|AAC23342.1| lipopolysaccharide biosynthesis protein, putative [Haemophilus influenzae Rd]
>gi|1786560|gb|AAC73466.1| polysaccharide metabolism [Escherichia coli K12]
>gi|1787259|gb|AAC74107.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788372|gb|AAC75120.1| putative regulator [Escherichia coli K12]
>gi|1788588|gb|AAC75314.1| putative sugar transferase [Escherichia coli K12]
>gi|1790044|gb|AAC76639.1| putative regulator [Escherichia coli K12]
--- CLUSTER 188 ---
>gi|1573899|gb|AAC22540.1| octaprenyl-diphosphate synthase (ispB) [Haemophilus influenzae Rd]
>gi|1574277|gb|AAC23087.1| geranyltranstransferase (ispA) [Haemophilus influenzae Rd]
>gi|1786623|gb|AAC73524.1| geranyltranstransferase (farnesyldiphosphate synthase) [Escherichia coli K12]
>gi|1789578|gb|AAC76219.1| octaprenyl diphosphate synthase [Escherichia coli K12]
--- CLUSTER 189 ---
>gi|1573936|gb|AAC22573.1| UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase (lpxD) [Haemophilus influenzae Rd]
>gi|1574612|gb|AAC22716.1| UDP-N-acetylglucosamine acetyltransferase (lpxA) [Haemophilus influenzae Rd]
>gi|1786376|gb|AAC73290.1| UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase; third step of endotoxin (lipidA) synthesis [Escherichia coli K12]
>gi|1786378|gb|AAC73292.1| UDP-N-acetylglucosamine acetyltransferase; lipid A biosynthesis [Escherichia coli K12]
--- CLUSTER 190 ---
>gi|1573947|gb|AAC22585.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1574089|gb|AAC22817.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787546|gb|AAC74371.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 191 --- SPLIT INTO 1653 1654
>gi|1573956|gb|AAC22593.1| thiol:disulfide interchange protein (dsbE) [Haemophilus influenzae Rd]
>gi|1574650|gb|AAC22752.1| thiol:disulfide interchange protein (dsbE) [Haemophilus influenzae Rd]
>gi|1574291|gb|AAC23101.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788523|gb|AAC75255.1| disulfide oxidoreductase (in biogenesis of cytochrome c? [Escherichia coli K12]
--- CLUSTER 192 ---
>gi|1573957|gb|AAC22594.1| cytochrome C-type biogenesis [Haemophilus influenzae Rd]
>gi|1574649|gb|AAC22751.1| cytochrome C-type biogenesis protein (ccmF) [Haemophilus influenzae Rd]
>gi|1788524|gb|AAC75256.1| cytochrome c-type biogenesis protein [Escherichia coli K12]
>gi|1790511|gb|AAD13457.1| formate-dependent nitrite reductase; possible assembly function [Escherichia coli K12]
--- CLUSTER 193 --- SPLIT INTO 1655 1656
>gi|1573965|gb|AAC22599.1| protease (degS) [Haemophilus influenzae Rd]
>gi|1574189|gb|AAC22906.1| periplasmic serine protease [Haemophilus influenzae Rd]
>gi|1786356|gb|AAC73272.1| periplasmic serine protease Do; heat shock protein HtrA [Escherichia coli K12]
>gi|1789629|gb|AAC76266.1| serine endoprotease [Escherichia coli K12]
>gi|1789630|gb|AAC76267.1| protease [Escherichia coli K12]
--- CLUSTER 194 ---
>gi|1573974|gb|AAC22610.1| aminotransferase [Haemophilus influenzae Rd]
>gi|1574398|gb|AAC23203.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase (bioA) [Haemophilus influenzae Rd]
>gi|1786349|gb|AAC73265.1| glutamate-1-semialdehyde aminotransferase (aminomutase) [Escherichia coli K12]
>gi|1786991|gb|AAC73861.1| 7,8-diaminopelargonic acid synthetase [Escherichia coli K12]
>gi|1787560|gb|AAC74384.1| 4-aminobutyrate aminotransferase [Escherichia coli K12]
>gi|1788044|gb|AAC74818.1| acetylornithine delta-aminotransferase [Escherichia coli K12]
>gi|1789016|gb|AAC75709.1| 4-aminobutyrate aminotransferase activity [Escherichia coli K12]
>gi|1789454|gb|AAC76108.1| probable ornithine aminotransferase [Escherichia coli K12]
>gi|1789759|gb|AAC76384.1| acetylornithine delta-aminotransferase [Escherichia coli K12]
--- CLUSTER 195 ---
>gi|1573982|gb|AAC22618.1| catabolite gene activator (crp) [Haemophilus influenzae Rd]
>gi|1574259|gb|AAC23062.1| fumarate (and nitrate) reduction regulatory protein (fnr) [Haemophilus influenzae Rd]
>gi|1787595|gb|AAC74416.1| transcriptional regulation of aerobic, anaerobic respiration, osmotic balance [Escherichia coli K12]
>gi|1789756|gb|AAC76382.1| cyclic AMP receptor protein [Escherichia coli K12]
--- CLUSTER 196 ---
>gi|1574001|gb|AAC22642.1| H. influenzae predicted coding region HI0974 [Haemophilus influenzae Rd]
>gi|1574026|gb|AAC22659.1| H. influenzae predicted coding region HI0997 [Haemophilus influenzae Rd]
--- CLUSTER 197 ---
>gi|1574001|gb|AAC22642.1| H. influenzae predicted coding region HI0974 [Haemophilus influenzae Rd]
>gi|1574027|gb|AAC22658.1| H. influenzae predicted coding region HI0996 [Haemophilus influenzae Rd]
--- CLUSTER 198 ---
>gi|1574775|gb|AAC22969.1| H. influenzae predicted coding region HI1315 [Haemophilus influenzae Rd]
>gi|1790113|gb|AAC76702.1| putative cotransporter [Escherichia coli K12]
--- CLUSTER 199 ---
>gi|1574003|gb|AAC22634.1| sodium/pantothenate symporter (panF) [Haemophilus influenzae Rd]
>gi|1574814|gb|AAC22999.1| sodium/proline symporter (proline permease) (putP) [Haemophilus influenzae Rd]
>gi|1787251|gb|AAC74100.1| major sodium/proline symporter [Escherichia coli K12]
>gi|1789656|gb|AAC76290.1| sodium/pantothenate symporter [Escherichia coli K12]
>gi|1790113|gb|AAC76702.1| putative cotransporter [Escherichia coli K12]
>gi|1790503|gb|AAC77037.1| putative transport protein [Escherichia coli K12]
--- CLUSTER 200 --- SPLIT INTO 1657 1658
>gi|1574035|gb|AAC22666.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1574615|gb|AAC22718.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787035|gb|AAC73902.1| putative enzyme [Escherichia coli K12]
>gi|1789564|gb|AAC76206.1| putative alkaline phosphatase I [Escherichia coli K12]
>gi|2367242|gb|AAC76570.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790392|gb|AAC76937.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790553|gb|AAC77075.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790726|gb|AAC77231.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 201 --- SPLIT INTO 1659 1660 1661
>gi|1574055|gb|AAC22683.1| transketolase 1 (tktA) [Haemophilus influenzae Rd]
>gi|1574164|gb|AAC22886.1| pyruvate dehydrogenase, E1 component (aceE) [Haemophilus influenzae Rd]
>gi|1574278|gb|AAC23088.1| 1-deoxyxylulose-5-phosphate synthase (dxs) {Escherichia coli) [Haemophilus influenzae Rd]
>gi|1786304|gb|AAC73225.1| pyruvate dehydrogenase (decarboxylase component) [Escherichia coli K12]
>gi|1786622|gb|AAC73523.1| 1-deoxyxylulose-5-phosphate synthase; flavoprotein [Escherichia coli K12]
>gi|1788808|gb|AAC75518.1| transketolase 2 isozyme [Escherichia coli K12]
>gi|2367177|gb|AAC75972.1| transketolase 1 isozyme [Escherichia coli K12]
--- CLUSTER 202 ---
>gi|1574609|gb|AAC22721.1| H. influenzae predicted coding region HI1056 [Haemophilus influenzae Rd]
>gi|1574618|gb|AAC22722.1| H. influenzae predicted coding region HI1058 [Haemophilus influenzae Rd]
--- CLUSTER 203 ---
>gi|1573196|gb|AAC21901.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788910|gb|AAC75611.1| putative periplasmic binding transport protein [Escherichia coli K12]
--- CLUSTER 204 ---
>gi|1788228|gb|AAC74987.1| putative periplasmic binding transport protein [Escherichia coli K12]
>gi|1788910|gb|AAC75611.1| putative periplasmic binding transport protein [Escherichia coli K12]
--- CLUSTER 205 --- SPLIT INTO 1662 1663
>gi|1574634|gb|AAC22736.1| amino acid ABC transporter, periplasmic-binding protein [Haemophilus influenzae Rd]
>gi|1574104|gb|AAC22830.1| arginine ABC transporter, periplasmic-binding protein (artI) [Haemophilus influenzae Rd]
>gi|1786876|gb|AAC73756.1| putative periplasmic binding transport protein [Escherichia coli K12]
>gi|1787031|gb|AAC73898.1| periplasmic glutamine-binding protein; permease [Escherichia coli K12]
>gi|1787085|gb|AAC73947.1| arginine 3rd transport system periplasmic binding protein [Escherichia coli K12]
>gi|1787088|gb|AAC73950.1| arginine 3rd transport system periplasmic binding protein [Escherichia coli K12]
>gi|1788228|gb|AAC74987.1| putative periplasmic binding transport protein [Escherichia coli K12]
>gi|1788648|gb|AAC75369.1| histidine-binding periplasmic protein of high-affinity histidine transport system [Escherichia coli K12]
>gi|1788649|gb|AAC75370.1| lysine-, arginine-, ornithine-binding periplasmic protein [Escherichia coli K12]
>gi|1789668|gb|AAC76300.1| putative periplasmic binding transport protein [Escherichia coli K12]
--- CLUSTER 206 ---
>gi|1574677|gb|AAC22776.1| oligopeptide ABC transporter, permease protein (oppC) [Haemophilus influenzae Rd]
>gi|1574113|gb|AAC22839.1| dipeptide ABC transporter, permease protein (dppC) [Haemophilus influenzae Rd]
>gi|1574488|gb|AAC23287.1| peptide ABC transporter, permease protein (sapC) [Haemophilus influenzae Rd]
>gi|1787054|gb|AAC73919.1| putative transport system permease protein [Escherichia coli K12]
>gi|1787498|gb|AAC74327.1| homolog of Salmonella oligopeptide transport permease protein [Escherichia coli K12]
>gi|1787549|gb|AAC74374.1| homolog of Salmonella peptide transport permease protein [Escherichia coli K12]
>gi|1787760|gb|AAC74558.1| putative transport protein [Escherichia coli K12]
>gi|1788505|gb|AAC75240.1| putative transport system permease protein [Escherichia coli K12]
>gi|1789889|gb|AAC76503.1| transport of nickel, membrane protein [Escherichia coli K12]
>gi|1789964|gb|AAC76567.1| dipeptide transport system permease protein 2 [Escherichia coli K12]
--- CLUSTER 207 ---
>gi|1574678|gb|AAC22777.1| oligopeptide ABC transporter, permease protein (oppB) [Haemophilus influenzae Rd]
>gi|1574114|gb|AAC22840.1| dipeptide ABC transporter, permease protein (dppB) [Haemophilus influenzae Rd]
>gi|1574487|gb|AAC23286.1| peptide ABC transporter, permease protein (sapB) [Haemophilus influenzae Rd]
>gi|1787053|gb|AAC73918.1| putative transport system permease protein [Escherichia coli K12]
>gi|1787497|gb|AAC74326.1| oligopeptide transport permease protein [Escherichia coli K12]
>gi|1787550|gb|AAC74375.1| homolog of Salmonella peptide transport permease protein [Escherichia coli K12]
>gi|1787761|gb|AAC74559.1| putative transport system permease protein [Escherichia coli K12]
>gi|1788504|gb|AAC75239.1| putative transport system permease protein [Escherichia coli K12]
>gi|1789888|gb|AAC76502.1| transport of nickel, membrane protein [Escherichia coli K12]
>gi|1789965|gb|AAC76568.1| dipeptide transport system permease protein 1 [Escherichia coli K12]
--- CLUSTER 208 ---
>gi|1574711|gb|AAC22809.1| proton glutamate symport protein, putative [Haemophilus influenzae Rd]
>gi|1574390|gb|AAC23195.1| sodium:dicarboxylate symporter protein [Haemophilus influenzae Rd]
>gi|1788024|gb|AAC74799.1| part of a kinase [Escherichia coli K12]
>gi|1789473|gb|AAC76124.1| putative transport protein [Escherichia coli K12]
>gi|1789947|gb|AAC76553.1| uptake of C4-dicarboxylic acids [Escherichia coli K12]
>gi|1790514|gb|AAD13460.1| glutamate-aspartate symport protein [Escherichia coli K12]
--- CLUSTER 209 ---
>gi|1574101|gb|AAC22827.1| opacity protein, putative [Haemophilus influenzae Rd]
>gi|1574294|gb|AAC23104.1| opacity protein, putative [Haemophilus influenzae Rd]
--- CLUSTER 210 ---
>gi|1574106|gb|AAC22832.1| phosphoheptose isomerase (gmhA) [Haemophilus influenzae Rd]
>gi|1574506|gb|AAC23301.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786416|gb|AAC73326.1| phosphoheptose isomerase [Escherichia coli K12]
>gi|1789539|gb|AAC76183.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 211 ---
>gi|1573395|gb|AAC22079.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788929|gb|AAC75628.1| putative enzyme [Escherichia coli K12]
--- CLUSTER 212 ---
>gi|1573395|gb|AAC22079.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787463|gb|AAC74296.1| possible protoporphyrinogen oxidase [Escherichia coli K12]
--- CLUSTER 213 ---
>gi|1574130|gb|AAC22855.1| adenine specific methylase, putative [Haemophilus influenzae Rd]
>gi|1574403|gb|AAC23208.1| hemK protein (hemK) [Haemophilus influenzae Rd]
>gi|1787463|gb|AAC74296.1| possible protoporphyrinogen oxidase [Escherichia coli K12]
>gi|1788670|gb|AAC75390.1| putative adenine-specific methylase [Escherichia coli K12]
--- CLUSTER 214 --- SPLIT INTO 1664 1665
>gi|1574131|gb|AAC22857.1| phosphate acetyltransferase (pta) [Haemophilus influenzae Rd]
>gi|1574176|gb|AAC22896.1| malate oxidoreductase, putative [Haemophilus influenzae Rd]
>gi|1788635|gb|AAC75357.1| phosphotransacetylase [Escherichia coli K12]
>gi|1788800|gb|AAC75511.1| ethanolamine utilization; homolog of Salmonella acetyl/butyryl P transferase [Escherichia coli K12]
>gi|1788806|gb|AAC75516.1| putative multimodular enzyme [Escherichia coli K12]
--- CLUSTER 215 ---
>gi|1574149|gb|AAC22872.1| cytidylate kinase 1 (cmkA) [Haemophilus influenzae Rd]
>gi|1574494|gb|AAC23293.1| cytidylate kinase 2 (cmkB) [Haemophilus influenzae Rd]
>gi|1787139|gb|AAC73996.1| cytidylate kinase [Escherichia coli K12]
--- CLUSTER 216 ---
>gi|1574163|gb|AAC22885.1| dihydrolipoamide acetyltransferase (aceF) [Haemophilus influenzae Rd]
>gi|1574511|gb|AAC23307.1| 2-oxoglutarate dehydrogenase E2 component, dihydrolipoamide succinyltransferase(sucB) [Haemophilus influenzae Rd]
>gi|1786305|gb|AAC73226.1| pyruvate dehydrogenase (dihydrolipoyltransacetylase component) [Escherichia coli K12]
>gi|1786946|gb|AAC73821.1| 2-oxoglutarate dehydrogenase (dihydrolipoyltranssuccinase E2 component) [Escherichia coli K12]
--- CLUSTER 217 ---
>gi|1574722|gb|AAC22917.1| DNA gyrase, subunit A (gyrA) [Haemophilus influenzae Rd]
>gi|1574370|gb|AAC23175.1| topoisomerase IV, subunit A (parC) [Haemophilus influenzae Rd]
>gi|1788562|gb|AAC75291.1| DNA gyrase, subunit A, type II topoisomerase [Escherichia coli K12]
>gi|1789396|gb|AAC76055.1| DNA topoisomerase IV subunit A [Escherichia coli K12]
--- CLUSTER 218 ---
>gi|1574800|gb|AAC22986.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1574302|gb|AAC23108.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786785|gb|AAC73673.1| putative resistance protein [Escherichia coli K12]
>gi|1788460|gb|AAC75199.1| putative channel/filament proteins [Escherichia coli K12]
>gi|2367348|gb|AAD13463.1| putative enzyme [Escherichia coli K12]
--- CLUSTER 219 ---
>gi|1574750|gb|AAC22940.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1574800|gb|AAC22986.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789158|gb|AAC75836.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 220 ---
>gi|1574751|gb|AAC22948.1| H. influenzae predicted coding region HI1292 [Haemophilus influenzae Rd]
>gi|1574808|gb|AAC22993.1| H. influenzae predicted coding region HI1341 [Haemophilus influenzae Rd]
--- CLUSTER 221 --- SPLIT INTO 1666 1667
>gi|1574772|gb|AAC22960.1| lipoprotein (nlpC) [Haemophilus influenzae Rd]
>gi|1574501|gb|AAC23297.1| lipoprotein (spr) [Haemophilus influenzae Rd]
>gi|1786421|gb|AAC73331.1| putative lipoprotein [Escherichia coli K12]
>gi|1787944|gb|AAC74727.1| putative lipoprotein [Escherichia coli K12]
>gi|1788001|gb|AAC74778.1| lipoprotein [Escherichia coli K12]
>gi|1788501|gb|AAC75236.1| putative lipoprotein [Escherichia coli K12]
--- CLUSTER 222 ---
>gi|1574788|gb|AAC22973.1| ribosomal protein S15 (rpS15) [Haemophilus influenzae Rd]
>gi|1574309|gb|AAC23117.1| ribosomal protein S15 (rpS15) [Haemophilus influenzae Rd]
>gi|1789556|gb|AAC76199.1| 30S ribosomal subunit protein S15 [Escherichia coli K12]
--- CLUSTER 223 ---
>gi|1574795|gb|AAC22974.1| IS1016-V6 protein (IS1016-V6) [Haemophilus influenzae Rd]
>gi|1574429|gb|AAC23226.1| IS1016-V6 protein, putative [Haemophilus influenzae Rd]
--- CLUSTER 224 --- SPLIT INTO 1668 1669
>gi|1574793|gb|AAC22979.1| cell division protein (ftsH) [Haemophilus influenzae Rd]
>gi|1574299|gb|AAC23112.1| cell division ftsH-related protein [Haemophilus influenzae Rd]
>gi|1789568|gb|AAC76210.1| degrades sigma32, integral membrane peptidase, cell division protein [Escherichia coli K12]
--- CLUSTER 225 ---
>gi|1574797|gb|AAC22983.1| dihydropteroate synthase (folP-1) [Haemophilus influenzae Rd]
>gi|1574304|gb|AAC23111.1| dihydropteroate synthase (folP-2) [Haemophilus influenzae Rd]
>gi|1789567|gb|AAC76209.1| 7,8-dihydropteroate synthase [Escherichia coli K12]
--- CLUSTER 226 ---
>gi|1574798|gb|AAC22984.1| mrsA protein (mrsA) [Haemophilus influenzae Rd]
>gi|1574303|gb|AAC23110.1| mrsA protein (mrsA) [Haemophilus influenzae Rd]
>gi|1788361|gb|AAC75109.1| phosphomannomutase [Escherichia coli K12]
>gi|1789566|gb|AAC76208.1| similar to phosphoglucomutases and phosphomannomutases [Escherichia coli K12]
--- CLUSTER 227 ---
>gi|1574807|gb|AAC22985.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|3212224|gb|AAC23109.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788681|gb|AAC75400.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 228 ---
>gi|1574799|gb|AAC22992.1| H. influenzae predicted coding region HI1339 [Haemophilus influenzae Rd]
>gi|3212225|gb|AAC23114.1| H. influenzae predicted coding region HI1462.1 [Haemophilus influenzae Rd]
--- CLUSTER 229 ---
>gi|1574219|gb|AAC23031.1| ferritin (rsgA) [Haemophilus influenzae Rd]
>gi|1574220|gb|AAC23032.1| ferritin (rsgA) [Haemophilus influenzae Rd]
>gi|1788212|gb|AAC74972.1| ferritin-like protein [Escherichia coli K12]
>gi|1788216|gb|AAC74975.1| cytoplasmic ferritin (an iron storage protein) [Escherichia coli K12]
--- CLUSTER 230 ---
>gi|1574254|gb|AAC23068.1| H. influenzae predicted coding region HI1418 [Haemophilus influenzae Rd]
>gi|1574256|gb|AAC23072.1| H. influenzae predicted coding region HI1422 [Haemophilus influenzae Rd]
--- CLUSTER 231 --- SPLIT INTO 1670 1671
>gi|1574266|gb|AAC23075.1| phosphoribosylglycinamide formyltransferase (purN) [Haemophilus influenzae Rd]
>gi|1574433|gb|AAC23236.1| formyltetrahydrofolate deformylase (purU) [Haemophilus influenzae Rd]
>gi|1787483|gb|AAC74314.1| formyltetrahydrofolate deformylase; for purT-dependent FGAR synthesis [Escherichia coli K12]
>gi|1788846|gb|AAC75553.1| phosphoribosylglycinamide formyltransferase 1 [Escherichia coli K12]
--- CLUSTER 232 ---
>gi|1574285|gb|AAC23095.1| dethiobiotin synthase (bioD-1) [Haemophilus influenzae Rd]
>gi|1574395|gb|AAC23200.1| dethiobiotin synthase (bioD-2) [Haemophilus influenzae Rd]
>gi|1786995|gb|AAC73865.1| dethiobiotin synthetase [Escherichia coli K12]
>gi|1787877|gb|AAC74665.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 233 ---
>gi|1573902|gb|AAC22543.1| thiol:disulfide interchange protein (dsbD) [Haemophilus influenzae Rd]
>gi|1574292|gb|AAC23102.1| cytochrome C-type biogenesis protein [Haemophilus influenzae Rd]
>gi|1790578|gb|AAC77096.1| thiol:disulfide interchange protein; copper tolerance [Escherichia coli K12]
--- CLUSTER 234 ---
>gi|1574342|gb|AAC23151.1| H. influenzae predicted coding region HI1501 [Haemophilus influenzae Rd]
>gi|3212234|gb|AAC23225.1| H. influenzae predicted coding region HI1571 [Haemophilus influenzae Rd]
--- CLUSTER 235 --- SPLIT INTO 1672 1673
>gi|1574383|gb|AAC23191.1| protease IV (sppA) [Haemophilus influenzae Rd]
>gi|1574534|gb|AAC23328.1| protease, putative (sohB) [Haemophilus influenzae Rd]
>gi|1787527|gb|AAC74354.1| putative protease [Escherichia coli K12]
>gi|1788064|gb|AAC74836.1| protease IV, a signal peptide peptidase [Escherichia coli K12]
--- CLUSTER 236 ---
>gi|1574393|gb|AAC23198.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1574399|gb|AAC23204.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1787360|gb|AAC74200.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787362|gb|AAC74202.1| putative kinase [Escherichia coli K12]
--- CLUSTER 237 ---
>gi|1574661|gb|AAC22762.1| Na+/H+ antiporter (nhaC) [Haemophilus influenzae Rd]
>gi|1574427|gb|AAC23234.1| conserved hypothetical integral membrane protein [Haemophilus influenzae Rd]
--- CLUSTER 238 --- SPLIT INTO 1674 1675
>gi|1573279|gb|AAC21975.1| Holliday junction DNA helicase (ruvB) [Haemophilus influenzae Rd]
>gi|1574435|gb|AAC23238.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787119|gb|AAC73978.1| putative polynucleotide enzyme [Escherichia coli K12]
>gi|1788167|gb|AAC74930.1| Holliday junction helicase subunit A; branch migration; repair [Escherichia coli K12]
--- CLUSTER 239 ---
>gi|1787685|gb|AAC74498.1| glyceraldehyde-3-phosphate dehydrogenase (second fragment) [Escherichia coli K12]
>gi|1788079|gb|AAC74849.1| glyceraldehyde-3-phosphate dehydrogenase A [Escherichia coli K12]
--- CLUSTER 240 --- SPLIT INTO 1676 1677
>gi|3212176|gb|AAC21680.1| glyceraldehyde-3-phosphate dehydrogenase (gapdH) [Haemophilus influenzae Rd]
>gi|1787686|gb|AAC74499.1| glyceraldehyde 3-phosphate dehydrogenase C, interrupted [Escherichia coli K12]
>gi|1788079|gb|AAC74849.1| glyceraldehyde-3-phosphate dehydrogenase A [Escherichia coli K12]
>gi|1789295|gb|AAC75964.1| D-erythrose 4-phosphate dehydrogenase [Escherichia coli K12]
--- CLUSTER 241 ---
>gi|1572948|gb|AAC21683.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786880|gb|AAC73760.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 242 ---
>gi|1572949|gb|AAC21684.1| fdhD protein (fdhD) [Haemophilus influenzae Rd]
>gi|1790329|gb|AAC76877.1| affects formate dehydrogenase-N [Escherichia coli K12]
--- CLUSTER 243 ---
>gi|1572951|gb|AAC21686.1| formate dehydrogenase, gamma subunit (fdxI) [Haemophilus influenzae Rd]
>gi|1787750|gb|AAD13440.1| formate dehydrogenase-N, nitrate-inducible, cytochrome B556(Fdn) gamma subunit [Escherichia coli K12]
>gi|1790325|gb|AAD13454.1| formate dehydrogenase, cytochrome B556 (FDO) subunit [Escherichia coli K12]
--- CLUSTER 244 ---
>gi|1572952|gb|AAC21687.1| fdhE protein (fdhE) [Haemophilus influenzae Rd]
>gi|1790324|gb|AAD13453.1| affects formate dehydrogenase-N [Escherichia coli K12]
--- CLUSTER 245 ---
>gi|1572953|gb|AAC21688.1| ribosomal-protein-alanine acetyltransferase (rimI) [Haemophilus influenzae Rd]
>gi|2367381|gb|AAC77326.1| acyltransferase for 30S ribosomal subunit protein S18; acetylation of N-terminal alanine [Escherichia coli K12]
--- CLUSTER 246 ---
>gi|1572954|gb|AAC21689.1| DNA polymerase III, psi subunit (holD) [Haemophilus influenzae Rd]
>gi|1790831|gb|AAC77325.1| DNA polymerase III, psi subunit [Escherichia coli K12]
--- CLUSTER 247 ---
>gi|1572956|gb|AAC21690.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789466|gb|AAC76119.1| putative enzyme [Escherichia coli K12]
>gi|1790830|gb|AAC77324.1| putative enzyme [Escherichia coli K12]
--- CLUSTER 248 ---
>gi|1572958|gb|AAC21692.1| ribonuclease III (rnc) [Haemophilus influenzae Rd]
>gi|1788920|gb|AAC75620.1| RNase III, ds RNA [Escherichia coli K12]
--- CLUSTER 249 ---
>gi|1572959|gb|AAC21693.1| signal peptidase I (lepB) [Haemophilus influenzae Rd]
>gi|1788921|gb|AAC75621.1| leader peptidase (signal peptidase I) [Escherichia coli K12]
--- CLUSTER 250 ---
>gi|1572962|gb|AAC21696.1| uracil DNA glycosylase (ung) [Haemophilus influenzae Rd]
>gi|1788934|gb|AAC75633.1| uracil-DNA-glycosylase [Escherichia coli K12]
--- CLUSTER 251 ---
>gi|1572963|gb|AAC21697.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786882|gb|AAC73762.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787057|gb|AAC73922.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 252 ---
>gi|1573601|gb|AAC22267.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788629|gb|AAC75352.1| putative transport protein [Escherichia coli K12]
--- CLUSTER 253 ---
>gi|1572964|gb|AAC21698.1| transport protein, putative [Haemophilus influenzae Rd]
>gi|1573601|gb|AAC22267.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786829|gb|AAC73713.1| putative a membrane protein [Escherichia coli K12]
>gi|1786986|gb|AAC73857.1| putative membrane pump protein [Escherichia coli K12]
>gi|1789444|gb|AAC76099.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 254 ---
>gi|1572965|gb|AAC21699.1| citG protein (citG) [Haemophilus influenzae Rd]
>gi|1786830|gb|AAC73714.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 255 ---
>gi|1572965|gb|AAC21699.1| citG protein (citG) [Haemophilus influenzae Rd]
>gi|1786831|gb|AAC73715.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 256 ---
>gi|1572967|gb|AAC21700.1| citrate lyase, alpha chain (citF) [Haemophilus influenzae Rd]
>gi|1786832|gb|AAC73716.1| citrate lyase alpha chain [Escherichia coli K12]
--- CLUSTER 257 ---
>gi|1572968|gb|AAC21701.1| citrate lyase, beta chain (citE) [Haemophilus influenzae Rd]
>gi|1786833|gb|AAC73717.1| citrate lyase beta chain (acyl lyase subunit) [Escherichia coli K12]
--- CLUSTER 258 ---
>gi|1572969|gb|AAC21702.1| citrate lyase, gamma chain (citD) [Haemophilus influenzae Rd]
>gi|1786834|gb|AAC73718.1| citrate lyase acyl carrier protein (gamma chain) [Escherichia coli K12]
--- CLUSTER 259 ---
>gi|1572970|gb|AAC21703.1| citrate lyase ligase (citC) [Haemophilus influenzae Rd]
>gi|1786835|gb|AAC73719.1| citrate lyase synthetase (citrate (pro-3S)-lyase ligase [Escherichia coli K12]
--- CLUSTER 260 ---
>gi|1572971|gb|AAC21704.1| lipoate biosynthesis protein A (lipA) [Haemophilus influenzae Rd]
>gi|1786846|gb|AAC73729.1| lipoate synthesis, sulfur insertion? [Escherichia coli K12]
--- CLUSTER 261 ---
>gi|1572972|gb|AAC21705.1| lipoate biosynthesis protein B (lipB) [Haemophilus influenzae Rd]
>gi|1786848|gb|AAC73731.1| protein of lipoate biosynthesis [Escherichia coli K12]
--- CLUSTER 262 ---
>gi|1572973|gb|AAC21706.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786850|gb|AAC73732.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 263 ---
>gi|1572975|gb|AAC21708.1| lipoprotein, putative [Haemophilus influenzae Rd]
>gi|1786852|gb|AAC73734.1| a minor lipoprotein [Escherichia coli K12]
--- CLUSTER 264 ---
>gi|1572978|gb|AAC21711.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786855|gb|AAC73737.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 265 ---
>gi|1572979|gb|AAC21712.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786856|gb|AAC73738.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 266 ---
>gi|1787071|gb|AAC73934.1| putative transport protein [Escherichia coli K12]
>gi|1790119|gb|AAC76708.1| putative transport protein [Escherichia coli K12]
--- CLUSTER 267 ---
>gi|1572981|gb|AAC21713.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790119|gb|AAC76708.1| putative transport protein [Escherichia coli K12]
--- CLUSTER 268 ---
>gi|1572984|gb|AAC21716.1| rod shape-determining protein (mreC) [Haemophilus influenzae Rd]
>gi|1789648|gb|AAC76282.1| rod shape-determining protein [Escherichia coli K12]
--- CLUSTER 269 ---
>gi|1572985|gb|AAC21717.1| rod shape-determining protein (mreD) [Haemophilus influenzae Rd]
>gi|1789647|gb|AAC76281.1| rod shape-determining protein [Escherichia coli K12]
--- CLUSTER 270 ---
>gi|1572987|gb|AAC21719.1| exodeoxyribonuclease III (xthA) [Haemophilus influenzae Rd]
>gi|1788046|gb|AAC74819.1| exonuclease III [Escherichia coli K12]
--- CLUSTER 271 ---
>gi|1572989|gb|AAC21721.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1787582|gb|AAC74404.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 272 ---
>gi|1572990|gb|AAC21722.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1787205|gb|AAC74056.1| putative carrier/transport protein [Escherichia coli K12]
--- CLUSTER 273 ---
>gi|1572992|gb|AAC21723.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790662|gb|AAC77173.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 274 ---
>gi|1572993|gb|AAC21724.1| alkylphosphonate uptake protein (phnA) [Haemophilus influenzae Rd]
>gi|1790547|gb|AAC77069.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 275 ---
>gi|1572994|gb|AAC21725.1| 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase (eda) [Haemophilus influenzae Rd]
>gi|1788156|gb|AAC74920.1| 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase [Escherichia coli K12]
--- CLUSTER 276 ---
>gi|1573401|gb|AAC22085.1| fatty acid metabolism regulator protein (fadR) [Haemophilus influenzae Rd]
>gi|1787436|gb|AAC74271.1| negative regulator for fad regulon, and positive activator of fabA [Escherichia coli K12]
--- CLUSTER 277 ---
>gi|1787436|gb|AAC74271.1| negative regulator for fad regulon, and positive activator of fabA [Escherichia coli K12]
>gi|1789621|gb|AAC76258.1| putative FADA-type transcriptional regulator [Escherichia coli K12]
--- CLUSTER 278 ---
>gi|1786950|gb|AAC73824.1| transcriptional regulator of succinylCoA synthetase operon [Escherichia coli K12]
>gi|1788418|gb|AAC75162.1| putative transcriptional regulator [Escherichia coli K12]
>gi|1789776|gb|AAC76400.1| putative transcriptional regulator [Escherichia coli K12]
>gi|1790118|gb|AAC76707.1| putative transcriptional regulator [Escherichia coli K12]
>gi|1790304|gb|AAC76869.1| putative transcriptional regulator [Escherichia coli K12]
>gi|1790540|gb|AAC77063.1| putative transcriptional regulator [Escherichia coli K12]
--- CLUSTER 279 ---
>gi|1786303|gb|AAC73224.1| transcriptional regulator for pyruvate dehydrogenase complex [Escherichia coli K12]
>gi|1789776|gb|AAC76400.1| putative transcriptional regulator [Escherichia coli K12]
--- CLUSTER 280 ---
>gi|1573001|gb|AAC21732.1| uxu operon regulator (uxuR) [Haemophilus influenzae Rd]
>gi|1786303|gb|AAC73224.1| transcriptional regulator for pyruvate dehydrogenase complex [Escherichia coli K12]
>gi|1789353|gb|AAC76016.1| transcriptional activator for glc operon [Escherichia coli K12]
>gi|1789480|gb|AAC76129.1| negative regulator of exu regulon, exuT, uxaAC, and uxuB [Escherichia coli K12]
>gi|1789621|gb|AAC76258.1| putative FADA-type transcriptional regulator [Escherichia coli K12]
>gi|1790032|gb|AAC76628.1| transcriptional regulator [Escherichia coli K12]
>gi|1790780|gb|AAC77280.1| regulator for uxu operon [Escherichia coli K12]
--- CLUSTER 281 ---
>gi|1573002|gb|AAC21733.1| mannonate dehydratase (uxuA) [Haemophilus influenzae Rd]
>gi|1790778|gb|AAC77278.1| mannonate hydrolase [Escherichia coli K12]
--- CLUSTER 282 ---
>gi|1573005|gb|AAC21735.1| excinuclease ABC, subunit C (uvrC) [Haemophilus influenzae Rd]
>gi|1788221|gb|AAC74980.1| excinuclease ABC, subunit C; repair of UV damage to DNA [Escherichia coli K12]
--- CLUSTER 283 ---
>gi|1573005|gb|AAC21735.1| excinuclease ABC, subunit C (uvrC) [Haemophilus influenzae Rd]
>gi|1788037|gb|AAC74811.1| putative excinuclease subunit [Escherichia coli K12]
--- CLUSTER 284 ---
>gi|1573006|gb|AAC21736.1| 3-deoxy-D-manno-octulosonate cytidylyltransferase (kdsB) [Haemophilus influenzae Rd]
>gi|1787147|gb|AAC74004.1| CTP:CMP-3-deoxy-D-manno-octulosonate transferase [Escherichia coli K12]
--- CLUSTER 285 ---
>gi|1573007|gb|AAC21737.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787144|gb|AAC74001.1| putative EC 1.2 enzyme [Escherichia coli K12]
--- CLUSTER 286 ---
>gi|1573009|gb|AAC21739.1| recombination protein (rec2) [Haemophilus influenzae Rd]
>gi|1787142|gb|AAC73999.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 287 ---
>gi|1573010|gb|AAC21740.1| dnaK suppressor protein (dksA) [Haemophilus influenzae Rd]
>gi|1786338|gb|AAC73256.1| dnaK suppressor protein [Escherichia coli K12]
--- CLUSTER 288 ---
>gi|1573012|gb|AAC21742.1| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine-pyrophosphokinase (folK) [Haemophilus influenzae Rd]
>gi|1786335|gb|AAC73253.1| 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase [Escherichia coli K12]
--- CLUSTER 289 ---
>gi|1573014|gb|AAC21743.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790610|gb|AAC77125.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 290 ---
>gi|1573015|gb|AAC21744.1| N-acetylmuramoyl-L-alanine amidase, putative [Haemophilus influenzae Rd]
>gi|1788776|gb|AAC75488.1| N-acetylmuramoyl-l-alanine amidase I [Escherichia coli K12]
>gi|1789180|gb|AAC75856.1| putative amidase [Escherichia coli K12]
>gi|1790611|gb|AAC77126.1| N-acetylmuramoyl-l-alanine amidase II; a murein hydrolase [Escherichia coli K12]
--- CLUSTER 291 ---
>gi|1573016|gb|AAC21745.1| DNA mismatch repair protein (mutL) [Haemophilus influenzae Rd]
>gi|1790612|gb|AAC77127.1| enzyme in methyl-directed mismatch repair [Escherichia coli K12]
--- CLUSTER 292 ---
>gi|1573017|gb|AAC21746.1| tRNA delta(2)-isopentenylpyrophosphate transferase (trpX) [Haemophilus influenzae Rd]
>gi|1790613|gb|AAC77128.1| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase [Escherichia coli K12]
--- CLUSTER 293 ---
>gi|1573018|gb|AAC21747.1| glutamate-ammonia-ligase adenylyltransferase (glnE) [Haemophilus influenzae Rd]
>gi|1789433|gb|AAC76089.1| adenylylating enzyme for glutamine synthetase [Escherichia coli K12]
--- CLUSTER 294 ---
>gi|1573019|gb|AAC21748.1| DNA repair protein (recN) [Haemophilus influenzae Rd]
>gi|1788969|gb|AAC75665.1| protein used in recombination and DNA repair [Escherichia coli K12]
--- CLUSTER 295 ---
>gi|1573020|gb|AAC21749.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788968|gb|AAC75664.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 296 ---
>gi|1573022|gb|AAC21750.1| heat shock protein (grpE) [Haemophilus influenzae Rd]
>gi|1788967|gb|AAC75663.1| phage lambda replication; host DNA synthesis; heat shock protein; protein repair [Escherichia coli K12]
--- CLUSTER 297 ---
>gi|1573024|gb|AAC21751.1| anaerobic ribonucleoside-triphosphate reductase (nrdD) [Haemophilus influenzae Rd]
>gi|1790686|gb|AAC77195.1| anaerobic ribonucleoside-triphosphate reductase [Escherichia coli K12]
--- CLUSTER 298 ---
>gi|1573025|gb|AAC21752.1| acyl-CoA thioesterase II (tesB) [Haemophilus influenzae Rd]
>gi|1786657|gb|AAC73555.1| acyl-CoA thioesterase II [Escherichia coli K12]
--- CLUSTER 299 ---
>gi|1573026|gb|AAC21753.1| cysteinyl-tRNA synthetase (cysS) [Haemophilus influenzae Rd]
>gi|1786737|gb|AAC73628.1| cysteine tRNA synthetase [Escherichia coli K12]
--- CLUSTER 300 ---
>gi|1573027|gb|AAC21754.1| peptidyl-prolyl cis-trans isomerase B (ppiB) [Haemophilus influenzae Rd]
>gi|1786736|gb|AAC73627.1| peptidyl-prolyl cis-trans isomerase B (rotamase B) [Escherichia coli K12]
>gi|1789763|gb|AAC76388.1| peptidyl-prolyl cis-trans isomerase A (rotamase A) [Escherichia coli K12]
--- CLUSTER 301 ---
>gi|1573028|gb|AAC21755.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|2367279|gb|AAC76781.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 302 ---
>gi|1573028|gb|AAC21755.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|2367280|gb|AAC76782.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 303 ---
>gi|1574716|gb|AAC22814.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786700|gb|AAC73594.1| putative thioredoxin-like protein [Escherichia coli K12]
--- CLUSTER 304 ---
>gi|1573030|gb|AAC21757.1| thioredoxin (trxM) [Haemophilus influenzae Rd]
>gi|1786700|gb|AAC73594.1| putative thioredoxin-like protein [Escherichia coli K12]
>gi|1788936|gb|AAC75635.1| putative thioredoxin-like protein [Escherichia coli K12]
>gi|1790215|gb|AAC76786.1| thioredoxin 1 [Escherichia coli K12]
--- CLUSTER 305 ---
>gi|1573038|gb|AAC21765.1| threonine synthase (thrC) [Haemophilus influenzae Rd]
>gi|1786185|gb|AAC73115.1| threonine synthase [Escherichia coli K12]
--- CLUSTER 306 ---
>gi|1573039|gb|AAC21766.1| homoserine kinase (thrB) [Haemophilus influenzae Rd]
>gi|1786184|gb|AAC73114.1| homoserine kinase [Escherichia coli K12]
--- CLUSTER 307 ---
>gi|1574478|gb|AAC23284.1| H. influenzae predicted coding region HI1632 [Haemophilus influenzae Rd]
>gi|1790455|gb|AAC76994.1| aspartokinase III, lysine sensitive [Escherichia coli K12]
--- CLUSTER 308 --- SPLIT INTO 1678 1679
>gi|1573040|gb|AAC21767.1| aspartokinase I / homoserine dehydrogenase I (thrA) [Haemophilus influenzae Rd]
>gi|1786183|gb|AAC73113.1| aspartokinase I, homoserine dehydrogenase I [Escherichia coli K12]
>gi|1790376|gb|AAC76922.1| aspartokinase II and homoserine dehydrogenase II [Escherichia coli K12]
>gi|1790455|gb|AAC76994.1| aspartokinase III, lysine sensitive [Escherichia coli K12]
--- CLUSTER 309 ---
>gi|1573041|gb|AAC21768.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789321|gb|AAC75988.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 310 ---
>gi|1573042|gb|AAC21769.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786724|gb|AAC73616.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789512|gb|AAC76158.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 311 ---
>gi|1573045|gb|AAC21771.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786357|gb|AAC73273.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 312 --- SPLIT INTO 1680 1681
>gi|1573051|gb|AAC21776.1| succinyl-diaminopimelate desuccinylase (dapE) [Haemophilus influenzae Rd]
>gi|1788816|gb|AAC75525.1| N-succinyl-diaminopimelate deacylase [Escherichia coli K12]
>gi|1789236|gb|AAC75910.1| putative deacetylase [Escherichia coli K12]
>gi|1790395|gb|AAC76939.1| acetylornithine deacetylase [Escherichia coli K12]
--- CLUSTER 313 ---
>gi|1573052|gb|AAC21777.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788815|gb|AAC75524.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 314 ---
>gi|1573053|gb|AAC21778.1| heat shock protein (htpG) [Haemophilus influenzae Rd]
>gi|1786679|gb|AAC73575.1| chaperone Hsp90, heat shock protein C 62.5 [Escherichia coli K12]
--- CLUSTER 315 ---
>gi|1573058|gb|AAC21783.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786928|gb|AAC73804.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 316 ---
>gi|1573061|gb|AAC21786.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790826|gb|AAC77320.1| putative structural protein [Escherichia coli K12]
--- CLUSTER 317 ---
>gi|1573061|gb|AAC21786.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790825|gb|AAC77319.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 318 ---
>gi|1573062|gb|AAC21787.1| seryl-tRNA synthetase (serS) [Haemophilus influenzae Rd]
>gi|1787120|gb|AAC73979.1| serine tRNA synthetase; also charges selenocystein tRNA with serine [Escherichia coli K12]
--- CLUSTER 319 ---
>gi|1787726|gb|AAC74536.1| putative transferase [Escherichia coli K12]
>gi|1787923|gb|AAC74707.1| glutathionine S-transferase [Escherichia coli K12]
--- CLUSTER 320 ---
>gi|1574280|gb|AAC23090.1| stringent starvation protein A (sspA) [Haemophilus influenzae Rd]
>gi|1789624|gb|AAC76261.1| regulator of transcription; stringent starvation protein A [Escherichia coli K12]
--- CLUSTER 321 ---
>gi|1787923|gb|AAC74707.1| glutathionine S-transferase [Escherichia coli K12]
>gi|1789624|gb|AAC76261.1| regulator of transcription; stringent starvation protein A [Escherichia coli K12]
--- CLUSTER 322 ---
>gi|1573063|gb|AAC21788.1| glutathione transferase (bphH) [Haemophilus influenzae Rd]
>gi|1787061|gb|AAC73925.1| putative transferase [Escherichia coli K12]
>gi|1787923|gb|AAC74707.1| glutathionine S-transferase [Escherichia coli K12]
>gi|1788640|gb|AAC75362.1| putative S-transferase [Escherichia coli K12]
>gi|1789363|gb|AAC76025.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 323 ---
>gi|1573074|gb|AAC21794.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788164|gb|AAC74927.1| putative adhesin [Escherichia coli K12]
--- CLUSTER 324 ---
>gi|1573078|gb|AAC21797.1| phosphatidylglycerophosphate synthase (pgsA) [Haemophilus influenzae Rd]
>gi|1788220|gb|AAC74979.1| phosphatidylglycerophosphate synthetase = CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyl transferase [Escherichia coli K12]
--- CLUSTER 325 ---
>gi|1573079|gb|AAC21798.1| inorganic pyrophosphatase (ppa) [Haemophilus influenzae Rd]
>gi|1790673|gb|AAC77183.1| inorganic pyrophosphatase [Escherichia coli K12]
--- CLUSTER 326 ---
>gi|1574157|gb|AAC22880.1| uracil permease (uraA) [Haemophilus influenzae Rd]
>gi|1786723|gb|AAC73615.1| putative transport [Escherichia coli K12]
>gi|1787241|gb|AAC74091.1| putative transport protein [Escherichia coli K12]
>gi|1788843|gb|AAC75550.1| uracil transport [Escherichia coli K12]
>gi|1789248|gb|AAC75920.1| putative transport protein [Escherichia coli K12]
>gi|1789254|gb|AAC75926.1| putative permease [Escherichia coli K12]
>gi|1790087|gb|AAC76678.1| putative transport protein [Escherichia coli K12]
--- CLUSTER 327 ---
>gi|1789254|gb|AAC75926.1| putative permease [Escherichia coli K12]
>gi|1790150|gb|AAC76737.1| putative membrane / transport protein [Escherichia coli K12]
--- CLUSTER 328 --- SPLIT INTO 1682 1683
>gi|1573080|gb|AAC21799.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789250|gb|AAC75922.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789251|gb|AAC75923.1| putative oxidoreductase [Escherichia coli K12]
>gi|1790097|gb|AAC76687.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790150|gb|AAC76737.1| putative membrane / transport protein [Escherichia coli K12]
>gi|1790499|gb|AAC77034.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 329 ---
>gi|1573086|gb|AAC21804.1| uridine kinase (udk) [Haemophilus influenzae Rd]
>gi|1788380|gb|AAC75127.1| uridine/cytidine kinase [Escherichia coli K12]
--- CLUSTER 330 ---
>gi|1573087|gb|AAC21805.1| deoxycytidine triphosphate deaminase (dcd) [Haemophilus influenzae Rd]
>gi|1788379|gb|AAC75126.1| 2'-deoxycytidine 5'-triphosphate deaminase [Escherichia coli K12]
--- CLUSTER 331 ---
>gi|1573090|gb|AAC21808.1| DNA polymerase III, epsilon subunit (dnaQ) [Haemophilus influenzae Rd]
>gi|1786409|gb|AAC73320.1| DNA polymerase III, epsilon subunit [Escherichia coli K12]
--- CLUSTER 332 ---
>gi|1573090|gb|AAC21808.1| DNA polymerase III, epsilon subunit (dnaQ) [Haemophilus influenzae Rd]
>gi|1788149|gb|AAC74914.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 333 ---
>gi|1573091|gb|AAC21809.1| ribonuclease H (rnh) [Haemophilus influenzae Rd]
>gi|1786408|gb|AAC73319.1| RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA replication [Escherichia coli K12]
--- CLUSTER 334 --- SPLIT INTO 1684 1685
>gi|1786436|gb|AAC73345.1| outer membrane pore protein E (E,Ic,NmpAB) [Escherichia coli K12]
>gi|1786765|gb|AAC73654.1| outer membrane porin protein; locus of qsr prophage [Escherichia coli K12]
>gi|1787160|gb|AAC74015.1| outer membrane protein 1a (Ia;b;F) [Escherichia coli K12]
>gi|1787641|gb|AAC74459.1| putative outer membrane protein [Escherichia coli K12]
>gi|1787746|gb|AAD13436.1| putative outer membrane porin protein [Escherichia coli K12]
>gi|1788275|gb|AAC75030.1| putative outer membrane protein [Escherichia coli K12]
>gi|1788276|gb|AAC75031.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788277|gb|AAC75032.1| putative outer membrane protein [Escherichia coli K12]
>gi|1788544|gb|AAC75275.1| outer membrane protein 1b (Ib;c) [Escherichia coli K12]
--- CLUSTER 335 ---
>gi|1573092|gb|AAC21810.1| outer membrane protein P2 (ompP2) [Haemophilus influenzae Rd]
>gi|1787160|gb|AAC74015.1| outer membrane protein 1a (Ia;b;F) [Escherichia coli K12]
--- CLUSTER 336 --- SPLIT INTO 1686 1687
>gi|1573096|gb|AAC21812.1| N-acetylglucosamine-6-phosphate deacetylase (nagA) [Haemophilus influenzae Rd]
>gi|1786892|gb|AAC73771.1| N-acetylglucosamine-6-phosphate deacetylase [Escherichia coli K12]
>gi|2367198|gb|AAC76169.1| putative N-acetylgalactosamine-6-phosphate deacetylase [Escherichia coli K12]
--- CLUSTER 337 ---
>gi|1573097|gb|AAC21813.1| glucosamine-6-phosphate isomerase (nagB) [Haemophilus influenzae Rd]
>gi|1786893|gb|AAC73772.1| glucosamine-6-phosphate deaminase [Escherichia coli K12]
>gi|1789530|gb|AAC76175.1| putative galactosamine-6-phosphate isomerase [Escherichia coli K12]
>gi|1790155|gb|AAC76741.1| putative isomerase [Escherichia coli K12]
--- CLUSTER 338 ---
>gi|1573099|gb|AAC21815.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788159|gb|AAC74923.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788767|gb|AAC75480.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788913|gb|AAC75614.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790527|gb|AAC77050.1| transcriptional repressor of rpiB expression [Escherichia coli K12]
--- CLUSTER 339 ---
>gi|1573101|gb|AAC21817.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789617|gb|AAC76255.1| putative enzyme [Escherichia coli K12]
--- CLUSTER 340 ---
>gi|1573104|gb|AAC21820.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790764|gb|AAC77266.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 341 ---
>gi|1573109|gb|AAC21831.1| H. influenzae predicted coding region HI0152 [Haemophilus influenzae Rd]
>gi|1789886|gb|AAC76500.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 342 ---
>gi|1573111|gb|AAC21823.1| acyl carrier protein (acpP) [Haemophilus influenzae Rd]
>gi|1787336|gb|AAC74178.1| acyl carrier protein [Escherichia coli K12]
--- CLUSTER 343 ---
>gi|1573113|gb|AAC21825.1| malonyl CoA-acyl carrier protein transacylase (fabD) [Haemophilus influenzae Rd]
>gi|1787334|gb|AAC74176.1| malonyl-CoA-[acyl-carrier-protein] transacylase [Escherichia coli K12]
--- CLUSTER 344 ---
>gi|1573114|gb|AAC21826.1| beta-ketoacyl-ACP synthase III (fabH) [Haemophilus influenzae Rd]
>gi|1787333|gb|AAC74175.1| 3-oxoacyl-[acyl-carrier-protein] synthase III; acetylCoA ACP transacylase [Escherichia coli K12]
--- CLUSTER 345 ---
>gi|1573115|gb|AAC21827.1| ribosomal protein L32 (rpL32) [Haemophilus influenzae Rd]
>gi|1787330|gb|AAC74173.1| 50S ribosomal subunit protein L32 [Escherichia coli K12]
--- CLUSTER 346 ---
>gi|1573116|gb|AAC21828.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787329|gb|AAC74172.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 347 ---
>gi|1573117|gb|AAC21829.1| phosphatidylserine decarboxylase proenzyme (psd) [Haemophilus influenzae Rd]
>gi|1790604|gb|AAC77120.1| phosphatidylserine decarboxylase; phospholipid synthesis [Escherichia coli K12]
--- CLUSTER 348 ---
>gi|1573120|gb|AAC21834.1| lipoprotein, putative [Haemophilus influenzae Rd]
>gi|1786637|gb|AAC73537.1| putative polymerase/proteinase [Escherichia coli K12]
--- CLUSTER 349 ---
>gi|1573121|gb|AAC21835.1| transcriptional regulator, putative (bolA) [Haemophilus influenzae Rd]
>gi|1786638|gb|AAC73538.1| possible regulator of murein genes [Escherichia coli K12]
--- CLUSTER 350 ---
>gi|1574538|gb|AAC23332.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787917|gb|AAC74702.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 351 ---
>gi|1573123|gb|AAC21837.1| NADH:ubiquinone oxidoreductase, subunit B (nqrB) [Haemophilus influenzae Rd]
>gi|1787917|gb|AAC74702.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 352 ---
>gi|1787658|gb|AAC74474.1| putative oxidoreductase [Escherichia coli K12]
>gi|1790359|gb|AAC76906.1| ferredoxin-NADP reductase [Escherichia coli K12]
--- CLUSTER 353 ---
>gi|1787658|gb|AAC74474.1| putative oxidoreductase [Escherichia coli K12]
>gi|1788903|gb|AAC75605.1| dihydropteridine reductase, ferrisiderophore reductase activity [Escherichia coli K12]
--- CLUSTER 354 ---
>gi|1574768|gb|AAC22956.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787098|gb|AAC73959.1| putative enzyme [Escherichia coli K12]
>gi|1787179|gb|AAC74033.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788568|gb|AAC75296.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 355 ---
>gi|1787098|gb|AAC73959.1| putative enzyme [Escherichia coli K12]
>gi|1788104|gb|AAC74873.1| putative diogenase beta subunit [Escherichia coli K12]
--- CLUSTER 356 ---
>gi|1788104|gb|AAC74873.1| putative diogenase beta subunit [Escherichia coli K12]
>gi|1788903|gb|AAC75605.1| dihydropteridine reductase, ferrisiderophore reductase activity [Escherichia coli K12]
--- CLUSTER 357 ---
>gi|1573127|gb|AAC21841.1| Nqr6 subunit of Na-translocating NADH-quinone reductase complex beta-subunit (nqr6) [Haemophilus influenzae Rd]
>gi|1788903|gb|AAC75605.1| dihydropteridine reductase, ferrisiderophore reductase activity [Escherichia coli K12]
--- CLUSTER 358 ---
>gi|1573128|gb|AAC21842.1| lipoprotein, putative [Haemophilus influenzae Rd]
>gi|1788543|gb|AAC75274.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 359 ---
>gi|1573129|gb|AAC21843.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787378|gb|AAC74217.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 360 ---
>gi|1573130|gb|AAC21844.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788945|gb|AAC75642.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 361 ---
>gi|1573134|gb|AAC21847.1| lipoprotein, putative [Haemophilus influenzae Rd]
>gi|1788947|gb|AAC75644.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 362 ---
>gi|1573137|gb|AAC21850.1| formate transporter [Haemophilus influenzae Rd]
>gi|1787132|gb|AAC73990.1| probable formate transporter (formate channel 1) [Escherichia coli K12]
>gi|1788837|gb|AAC75545.1| probable formate transporter (formate channel 2) [Escherichia coli K12]
--- CLUSTER 363 ---
>gi|1573137|gb|AAC21850.1| formate transporter [Haemophilus influenzae Rd]
>gi|1789767|gb|AAC76392.1| nitrite reductase activity [Escherichia coli K12]
--- CLUSTER 364 ---
>gi|1573140|gb|AAC21853.1| esterase [Haemophilus influenzae Rd]
>gi|1786551|gb|AAC73458.1| putative esterase (EC 3.1.1.1) [Escherichia coli K12]
>gi|1788477|gb|AAC75215.1| putative esterase (EC 3.1.1.-). [Escherichia coli K12]
--- CLUSTER 365 ---
>gi|1573146|gb|AAC21857.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|2367313|gb|AAC76842.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 366 ---
>gi|1573147|gb|AAC21858.1| glutamate dehydrogenase (gdhA) [Haemophilus influenzae Rd]
>gi|1788059|gb|AAC74831.1| NADP-specific glutamate dehydrogenase [Escherichia coli K12]
--- CLUSTER 367 ---
>gi|1573148|gb|AAC21859.1| ferric uptake regulation protein (fur) [Haemophilus influenzae Rd]
>gi|1786899|gb|AAC73777.1| negative regulator [Escherichia coli K12]
--- CLUSTER 368 ---
>gi|1573149|gb|AAC21860.1| flavodoxin (fldA) [Haemophilus influenzae Rd]
>gi|1786900|gb|AAC73778.1| flavodoxin 1 [Escherichia coli K12]
>gi|1789262|gb|AAC75933.1| flavodoxin 2 [Escherichia coli K12]
--- CLUSTER 369 ---
>gi|1573150|gb|AAC21862.1| esterase/lipase, putative [Haemophilus influenzae Rd]
>gi|1786902|gb|AAC73780.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 370 ---
>gi|1573151|gb|AAC21861.1| seqA protein (seqA) [Haemophilus influenzae Rd]
>gi|1786903|gb|AAC73781.1| negative modulator of initiation of replication [Escherichia coli K12]
--- CLUSTER 371 --- SPLIT INTO 1688 1689
>gi|1573153|gb|AAC21864.1| conserved hypothetical transmembrane protein (aefA) [Haemophilus influenzae Rd]
>gi|1786670|gb|AAC73567.1| putative alpha helix protein [Escherichia coli K12]
>gi|1787028|gb|AAC73895.1| putative transport protein [Escherichia coli K12]
>gi|1787591|gb|AAC74412.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789291|gb|AAC75961.1| putative transport protein [Escherichia coli K12]
>gi|2367355|gb|AAC77119.1| putative periplasmic binding protein [Escherichia coli K12]
--- CLUSTER 372 ---
>gi|1573154|gb|AAC21865.1| chorismate synthase (aroC) [Haemophilus influenzae Rd]
>gi|1788669|gb|AAC75389.1| chorismate synthase [Escherichia coli K12]
--- CLUSTER 373 ---
>gi|1573157|gb|AAC21866.1| penicillin-insensitive murein endopeptidase (mepA) [Haemophilus influenzae Rd]
>gi|1788668|gb|AAC75388.1| murein DD-endopeptidase, penicillin-insensitive [Escherichia coli K12]
--- CLUSTER 374 ---
>gi|1573158|gb|AAC21867.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1788667|gb|AAC75387.1| putative structural protein [Escherichia coli K12]
--- CLUSTER 375 ---
>gi|1573160|gb|AAC21869.1| selenide, water dikinase (selD) [Haemophilus influenzae Rd]
>gi|1788062|gb|AAC74834.1| selenophosphate synthase, H(2)Se added to acrylyl-tRNA [Escherichia coli K12]
--- CLUSTER 376 ---
>gi|1573161|gb|AAC21870.1| ribosomal protein L19 (rpL19) [Haemophilus influenzae Rd]
>gi|1788958|gb|AAC75655.1| 50S ribosomal subunit protein L19 [Escherichia coli K12]
--- CLUSTER 377 ---
>gi|1573162|gb|AAC21871.1| tRNA (guanine-N1)-methyltransferase (trmD) [Haemophilus influenzae Rd]
>gi|1788959|gb|AAC75656.1| tRNA methyltransferase; tRNA (guanine-7-)-methyltransferase [Escherichia coli K12]
--- CLUSTER 378 ---
>gi|1573163|gb|AAC21872.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788960|gb|AAC75657.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 379 ---
>gi|1573164|gb|AAC21873.1| ribosomal protein S16 (rpS16) [Haemophilus influenzae Rd]
>gi|1788961|gb|AAC75658.1| 30S ribosomal subunit protein S16 [Escherichia coli K12]
--- CLUSTER 380 ---
>gi|1573166|gb|AAC21875.1| shikimic acid kinase I (aroK) [Haemophilus influenzae Rd]
>gi|1786587|gb|AAC73491.1| shikimate kinase II [Escherichia coli K12]
>gi|1789792|gb|AAC76415.1| shikimate kinase I [Escherichia coli K12]
--- CLUSTER 381 ---
>gi|1573167|gb|AAC21876.1| 3-dehydroquinate synthase (aroB) [Haemophilus influenzae Rd]
>gi|1789791|gb|AAC76414.1| 3-dehydroquinate synthase [Escherichia coli K12]
--- CLUSTER 382 ---
>gi|1573168|gb|AAC21877.1| DNA adenine methylase (dam) [Haemophilus influenzae Rd]
>gi|1789789|gb|AAC76412.1| DNA adenine methylase [Escherichia coli K12]
--- CLUSTER 383 ---
>gi|1573171|gb|AAC21879.1| phosphatidylglycerophosphatase B (pgpB) [Haemophilus influenzae Rd]
>gi|1787534|gb|AAC74360.1| non-essential phosphatidylglycerophosphate phosphatase, membrane bound [Escherichia coli K12]
--- CLUSTER 384 ---
>gi|1573172|gb|AAC21880.1| GTP cyclohydrolase II (ribA) [Haemophilus influenzae Rd]
>gi|1787533|gb|AAC74359.1| GTP cyclohydrolase II [Escherichia coli K12]
--- CLUSTER 385 ---
>gi|1573174|gb|AAC21882.1| oligopeptidase A (prlC) [Haemophilus influenzae Rd]
>gi|1787819|gb|AAC74611.1| dipeptidyl carboxypeptidase II [Escherichia coli K12]
>gi|1789913|gb|AAC76523.1| oligopeptidase A [Escherichia coli K12]
--- CLUSTER 386 ---
>gi|1573176|gb|AAC21884.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786422|gb|AAC73332.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 387 ---
>gi|1573181|gb|AAC21887.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1786492|gb|AAC73404.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 388 ---
>gi|1573184|gb|AAC21889.1| biotin operon repressor/biotin acetyl coenzyme A carboxylase synthetase (birA) [Haemophilus influenzae Rd]
>gi|1790408|gb|AAC76951.1| biotin-[acetylCoA carboxylase] holoenzyme synthetase and biotin operon repressor [Escherichia coli K12]
--- CLUSTER 389 ---
>gi|1573189|gb|AAC21894.1| Na+/H+ antiporter (nhaA) [Haemophilus influenzae Rd]
>gi|1786201|gb|AAC73130.1| Na+/H antiporter, pH dependent [Escherichia coli K12]
--- CLUSTER 390 ---
>gi|1573191|gb|AAC21896.1| branched chain amino acid transport system II carrier protein (brnQ) [Haemophilus influenzae Rd]
>gi|1786601|gb|AAC73504.1| branched chain amino acid transport system II carrier protein [Escherichia coli K12]
--- CLUSTER 391 ---
>gi|1573192|gb|AAC21897.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789615|gb|AAC76253.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790001|gb|AAC76600.1| putative lipase [Escherichia coli K12]
>gi|1790701|gb|AAC77209.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 392 ---
>gi|1573194|gb|AAC21899.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789554|gb|AAC76197.1| putative control proteins [Escherichia coli K12]
--- CLUSTER 393 ---
>gi|1573202|gb|AAC21906.1| arsenate reductase, putative [Haemophilus influenzae Rd]
>gi|1788841|gb|AAC75548.1| putative oxidoreductase [Escherichia coli K12]
>gi|1788991|gb|AAC75686.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789918|gb|AAC76528.1| arsenate reductase [Escherichia coli K12]
--- CLUSTER 394 --- SPLIT INTO 1690 1691
>gi|1573204|gb|AAC21907.1| protein-export membrane protein (secF) [Haemophilus influenzae Rd]
>gi|1573205|gb|AAC21908.1| protein-export membrane protein (secD) [Haemophilus influenzae Rd]
>gi|1786609|gb|AAC73511.1| protein secretion; membrane protein, part of the channel [Escherichia coli K12]
>gi|1786610|gb|AAC73512.1| protein secretion, membrane protein [Escherichia coli K12]
--- CLUSTER 395 ---
>gi|1573206|gb|AAC21909.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786608|gb|AAC73510.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 396 ---
>gi|1573209|gb|AAC21911.1| tRNA-guanine transglycosylase (tgt) [Haemophilus influenzae Rd]
>gi|1786607|gb|AAC73509.1| tRNA-guanine transglycosylase [Escherichia coli K12]
--- CLUSTER 397 ---
>gi|1573210|gb|AAC21912.1| queuosine biosynthesis protein (queA) [Haemophilus influenzae Rd]
>gi|1786606|gb|AAC73508.1| synthesis of queuine in tRNA; probably S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Escherichia coli K12]
--- CLUSTER 398 ---
>gi|1573216|gb|AAC21916.1| single-stranded DNA binding protein (ssb) [Haemophilus influenzae Rd]
>gi|1790494|gb|AAC77029.1| ssDNA-binding protein [Escherichia coli K12]
--- CLUSTER 399 ---
>gi|1573217|gb|AAC21917.1| tonB protein [Haemophilus influenzae Rd]
>gi|1787505|gb|AAC74334.1| energy transducer; uptake of iron, cyanocobalimin; sensitivity to phages, colicins [Escherichia coli K12]
--- CLUSTER 400 ---
>gi|1573354|gb|AAC22042.1| colicin transport protein (tolR) [Haemophilus influenzae Rd]
>gi|1786959|gb|AAC73832.1| putative inner membrane protein, involved in the tonB-independent uptake of group A colicins [Escherichia coli K12]
>gi|1789380|gb|AAC76041.1| uptake of enterochelin; tonB-dependent uptake of B colicins [Escherichia coli K12]
--- CLUSTER 401 ---
>gi|1573218|gb|AAC21918.1| biopolymer transport protein (exbD) [Haemophilus influenzae Rd]
>gi|1789380|gb|AAC76041.1| uptake of enterochelin; tonB-dependent uptake of B colicins [Escherichia coli K12]
--- CLUSTER 402 ---
>gi|1573355|gb|AAC22043.1| colicin transport protein (tolQ) [Haemophilus influenzae Rd]
>gi|1786958|gb|AAC73831.1| inner membrane protein, membrane-spanning, maintains integrity of cell envelope; tolerance to group A colicins [Escherichia coli K12]
>gi|1789381|gb|AAC76042.1| uptake of enterochelin; tonB-dependent uptake of B colicins [Escherichia coli K12]
--- CLUSTER 403 ---
>gi|1573219|gb|AAC21919.1| biopolymer transport protein (exbB) [Haemophilus influenzae Rd]
>gi|1789381|gb|AAC76042.1| uptake of enterochelin; tonB-dependent uptake of B colicins [Escherichia coli K12]
--- CLUSTER 404 ---
>gi|1573220|gb|AAC21920.1| bacterioferritin comigratory protein (bcp) [Haemophilus influenzae Rd]
>gi|1788825|gb|AAC75533.1| bacterioferritin comigratory protein [Escherichia coli K12]
--- CLUSTER 405 ---
>gi|1573222|gb|AAC21922.1| lipoprotein, putative [Haemophilus influenzae Rd]
>gi|1788822|gb|AAC75530.1| lipoprotein-34 [Escherichia coli K12]
--- CLUSTER 406 ---
>gi|1573223|gb|AAC21923.1| sigma(54) modulation protein, putative [Haemophilus influenzae Rd]
>gi|1788949|gb|AAC75646.1| putative yhbH sigma 54 modulator [Escherichia coli K12]
>gi|1789595|gb|AAC76235.1| probable sigma-54 modulation protein [Escherichia coli K12]
--- CLUSTER 407 ---
>gi|1573224|gb|AAC21924.1| glycosyl transferase, putative [Haemophilus influenzae Rd]
>gi|1790056|gb|AAC76650.1| UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase [Escherichia coli K12]
>gi|1790057|gb|AAC76651.1| UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase [Escherichia coli K12]
--- CLUSTER 408 ---
>gi|1573226|gb|AAC21925.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789324|gb|AAC75991.1| putative ribosomal protein [Escherichia coli K12]
--- CLUSTER 409 ---
>gi|1790050|gb|AAC76644.1| ADP-heptose--lps heptosyltransferase II; lipopolysaccharide core biosynthesis [Escherichia coli K12]
>gi|1790051|gb|AAC76645.1| heptosyl transferase I; lipopolysaccharide core biosynthesis [Escherichia coli K12]
--- CLUSTER 410 ---
>gi|1574659|gb|AAC22760.1| ADP-heptose--LPS heptosyltransferase II (rfaF) [Haemophilus influenzae Rd]
>gi|1790050|gb|AAC76644.1| ADP-heptose--lps heptosyltransferase II; lipopolysaccharide core biosynthesis [Escherichia coli K12]
>gi|1790062|gb|AAC76656.1| lipopolysaccharide core biosynthesis [Escherichia coli K12]
--- CLUSTER 411 ---
>gi|1573227|gb|AAC21926.1| lipopolysaccharide biosynthesis protein, putative [Haemophilus influenzae Rd]
>gi|1790062|gb|AAC76656.1| lipopolysaccharide core biosynthesis [Escherichia coli K12]
--- CLUSTER 412 ---
>gi|1787788|gb|AAC74583.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788309|gb|AAC75061.1| outer membrane fluffing protein, similar to adhesin [Escherichia coli K12]
--- CLUSTER 413 --- SPLIT INTO 1692 1693 1694
>gi|1573230|gb|AAC21929.1| heme-hemopexin utilization protein A (hxuA) [Haemophilus influenzae Rd]
>gi|1574019|gb|AAC22651.1| immunoglobin A1 protease (iga1) [Haemophilus influenzae Rd]
>gi|1786572|gb|AAC73477.1| putative flagellin structural protein [Escherichia coli K12]
>gi|1787416|gb|AAC74253.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787418|gb|AAC74254.1| putative part of putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787421|gb|AAC74257.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787452|gb|AAC74286.1| putative adhesion and penetration protein [Escherichia coli K12]
>gi|1787668|gb|AAC74483.1| split orf [Escherichia coli K12]
>gi|1787672|gb|AAC74487.1| split orf [Escherichia coli K12]
>gi|1787787|gb|AAC74582.1| putative ATP-binding component of a transport system and adhesin protein [Escherichia coli K12]
>gi|1787954|gb|AAC74736.1| possible enzyme [Escherichia coli K12]
>gi|1788309|gb|AAC75061.1| outer membrane fluffing protein, similar to adhesin [Escherichia coli K12]
>gi|1788516|gb|AAC75250.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1788565|gb|AAC75293.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1789001|gb|AAC75695.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1789346|gb|AAC76010.1| putative endoglucanase [Escherichia coli K12]
--- CLUSTER 414 ---
>gi|3212189|gb|AAC21930.1| dihydroneopterin aldolase, putative [Haemophilus influenzae Rd]
>gi|1788641|gb|AAC75363.1| D-erythro-7,8-dihydroneopterin tri P epimerase [Escherichia coli K12]
>gi|1789438|gb|AAC76094.1| putative kinase [Escherichia coli K12]
--- CLUSTER 415 ---
>gi|1573232|gb|AAC21932.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789439|gb|AAC76095.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 416 --- SPLIT INTO 1695 1696
>gi|1573233|gb|AAC21933.1| nitrate/nitrite sensor protein (narQ) [Haemophilus influenzae Rd]
>gi|1787474|gb|AAC74306.1| nitrate/nitrate sensor, histidine protein kinase acts on NarL regulator [Escherichia coli K12]
>gi|1788812|gb|AAC75522.1| sensor for nitrate reductase system, protein histidine kinase (acts on NarP and narL) [Escherichia coli K12]
>gi|1790101|gb|AAC76691.1| sensor histidine protein kinase phosphorylates UhpA [Escherichia coli K12]
--- CLUSTER 417 ---
>gi|1573234|gb|AAC21934.1| UDP-N-acetylenolpyruvoylglucosamine reductase (murB) [Haemophilus influenzae Rd]
>gi|1790407|gb|AAC76950.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Escherichia coli K12]
--- CLUSTER 418 ---
>gi|1573237|gb|AAC21937.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786241|gb|AAC73166.1| putative DNA binding protein [Escherichia coli K12]
--- CLUSTER 419 ---
>gi|1573238|gb|AAC21938.1| orotate phosphoribosyltransferase (pyrE) [Haemophilus influenzae Rd]
>gi|1790073|gb|AAC76666.1| orotate phosphoribosyltransferase [Escherichia coli K12]
--- CLUSTER 420 ---
>gi|1573239|gb|AAC21939.1| ribonuclease PH (rph) [Haemophilus influenzae Rd]
>gi|1790074|gb|AAC76667.1| RNase PH [Escherichia coli K12]
--- CLUSTER 421 ---
>gi|1573242|gb|AAC21941.1| ribonuclease BN (rbn) [Haemophilus influenzae Rd]
>gi|1790319|gb|AAD13448.1| tRNA processing exoribonuclease BN [Escherichia coli K12]
--- CLUSTER 422 ---
>gi|1573243|gb|AAC21942.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787484|gb|AAC74315.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 423 ---
>gi|1573244|gb|AAC21950.1| H. influenzae predicted coding region HI0278 [Haemophilus influenzae Rd]
>gi|1790345|gb|AAC76892.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 424 ---
>gi|1573247|gb|AAC21945.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788598|gb|AAC75323.1| putative enzyme [Escherichia coli K12]
--- CLUSTER 425 ---
>gi|1573248|gb|AAC21946.1| 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase/2-oxoglutarate decarboxylase (menD) [Haemophilus influenzae Rd]
>gi|1788599|gb|AAC75324.1| 2-oxoglutarate decarboxylase; SHCHC synthase [Escherichia coli K12]
--- CLUSTER 426 --- SPLIT INTO 1697 1698
>gi|1573256|gb|AAC21953.1| L-serine deaminase (sdaA) [Haemophilus influenzae Rd]
>gi|1788116|gb|AAC74884.1| L-serine deaminase [Escherichia coli K12]
>gi|1789161|gb|AAC75839.1| L-serine dehydratase (deaminase), L-SD2 [Escherichia coli K12]
>gi|1789498|gb|AAC76146.1| putative L-serine dehydratase [Escherichia coli K12]
>gi|1789500|gb|AAC76147.1| putative L-serine dehydratase [Escherichia coli K12]
--- CLUSTER 427 --- SPLIT INTO 1699 1700
>gi|1573258|gb|AAC21955.1| potassium/copper-transporting ATPase, putative [Haemophilus influenzae Rd]
>gi|1786691|gb|AAC73586.1| putative ATPase [Escherichia coli K12]
>gi|1786914|gb|AAC73791.1| ATPase of high-affinity potassium transport system, B chain [Escherichia coli K12]
>gi|1789879|gb|AAC76494.1| zinc-transporting ATPase [Escherichia coli K12]
>gi|2367363|gb|AAC77199.1| Mg2+ transport ATPase, P-type 1 [Escherichia coli K12]
--- CLUSTER 428 ---
>gi|1573262|gb|AAC21958.1| met repressor (metJ) [Haemophilus influenzae Rd]
>gi|1790373|gb|AAC76920.1| repressor of all met genes but metF [Escherichia coli K12]
--- CLUSTER 429 ---
>gi|1573264|gb|AAC21960.1| type 4 prepilin-like protein specific leader peptidase (hopD) [Haemophilus influenzae Rd]
>gi|1789343|gb|AAC76008.1| putative peptidase [Escherichia coli K12]
>gi|1789732|gb|AAC76360.1| leader peptidase, integral membrane protein [Escherichia coli K12]
--- CLUSTER 430 ---
>gi|1573265|gb|AAC21961.1| protein transport protein [Haemophilus influenzae Rd]
>gi|1786295|gb|AAC73217.1| putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake [Escherichia coli K12]
>gi|1789724|gb|AAC76352.1| putative general protein secretion protein [Escherichia coli K12]
--- CLUSTER 431 ---
>gi|1573266|gb|AAC21962.1| protein transport protein [Haemophilus influenzae Rd]
>gi|1786296|gb|AAC73218.1| putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake [Escherichia coli K12]
>gi|1789320|gb|AAC75987.1| putative protein transport [Escherichia coli K12]
>gi|1789723|gb|AAC76351.1| putative general secretion pathway for protein export (GSP) (TYPE II TRAFFIC WARDEN ATPASE) [Escherichia coli K12]
--- CLUSTER 432 ---
>gi|1573267|gb|AAC21963.1| prepilin peptidase dependent protein D [Haemophilus influenzae Rd]
>gi|1786297|gb|AAC73219.1| prelipin peptidase dependent protein [Escherichia coli K12]
--- CLUSTER 433 --- SPLIT INTO 1701 1702
>gi|1573269|gb|AAC21965.1| ampD signalling protein (ampD) [Haemophilus influenzae Rd]
>gi|1786300|gb|AAC73221.1| regulates ampC [Escherichia coli K12]
>gi|1787092|gb|AAC73954.1| putative regulator [Escherichia coli K12]
--- CLUSTER 434 ---
>gi|1573271|gb|AAC21967.1| apolipoprotein N-acyltransferase (cutE) [Haemophilus influenzae Rd]
>gi|1786878|gb|AAC73758.1| apolipoprotein N-acyltransferase, copper homeostasis protein, inner membrane [Escherichia coli K12]
--- CLUSTER 435 ---
>gi|1573272|gb|AAC21968.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789315|gb|AAC75983.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 436 ---
>gi|1573273|gb|AAC21969.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789317|gb|AAC75985.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 437 ---
>gi|1573274|gb|AAC21970.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789318|gb|AAC75986.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 438 ---
>gi|1573275|gb|AAC21971.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786592|gb|AAC73496.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 439 ---
>gi|1573276|gb|AAC21972.1| pyrroline-5-carboxylate reductase (proC) [Haemophilus influenzae Rd]
>gi|1786585|gb|AAC73489.1| pyrroline-5-carboxylate reductase [Escherichia coli K12]
--- CLUSTER 440 ---
>gi|1573280|gb|AAC21976.1| Holliday junction DNA helicase (ruvA) [Haemophilus influenzae Rd]
>gi|1788168|gb|AAC74931.1| Holliday junction helicase subunit B; branch migration; repair [Escherichia coli K12]
--- CLUSTER 441 ---
>gi|1573284|gb|AAC21978.1| crossover junction endodeoxyribonuclease (ruvC) [Haemophilus influenzae Rd]
>gi|1788170|gb|AAC74933.1| Holliday junction nuclease; resolution of structures; repair [Escherichia coli K12]
--- CLUSTER 442 ---
>gi|1573285|gb|AAC21979.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788171|gb|AAC74934.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788294|gb|AAC75047.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 443 ---
>gi|1573286|gb|AAC21980.1| datP pyrophosphohydrolase (ntpA) [Haemophilus influenzae Rd]
>gi|1788172|gb|AAC74935.1| dATP pyrophosphohydrolase [Escherichia coli K12]
--- CLUSTER 444 ---
>gi|1573289|gb|AAC21983.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788177|gb|AAC74940.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 445 ---
>gi|1573292|gb|AAC21986.1| lactoylglutathione lyase (gloA) [Haemophilus influenzae Rd]
>gi|1787940|gb|AAC74723.1| lactoylglutathione lyase [Escherichia coli K12]
--- CLUSTER 446 ---
>gi|1573293|gb|AAC21987.1| ribonuclease T (rnt) [Haemophilus influenzae Rd]
>gi|1787941|gb|AAC74724.1| RNase T, degrades tRNA [Escherichia coli K12]
--- CLUSTER 447 ---
>gi|1573295|gb|AAC21989.1| elongation factor P (efp) [Haemophilus influenzae Rd]
>gi|1788496|gb|AAC75232.1| putative elongation factor [Escherichia coli K12]
>gi|1790590|gb|AAC77107.1| elongation factor P (EF-P) [Escherichia coli K12]
--- CLUSTER 448 ---
>gi|1573296|gb|AAC21990.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790589|gb|AAC77106.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 449 ---
>gi|1573300|gb|AAC21992.1| opacity associated protein (oapA) [Haemophilus influenzae Rd]
>gi|1790651|gb|AAC77163.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 450 ---
>gi|1573301|gb|AAC21994.1| DNA repair protein (recO) [Haemophilus influenzae Rd]
>gi|2367140|gb|AAC75618.1| protein interacts with RecR and possibly RecF proteins [Escherichia coli K12]
--- CLUSTER 451 ---
>gi|1573304|gb|AAC21997.1| diacylglycerol kinase (dgkA) [Haemophilus influenzae Rd]
>gi|1790475|gb|AAC77012.1| diacylglycerol kinase [Escherichia coli K12]
--- CLUSTER 452 ---
>gi|1573305|gb|AAC21998.1| molybdopeterin biosynthesis protein (mog) [Haemophilus influenzae Rd]
>gi|1786190|gb|AAC73120.1| required for the efficient incorporation of molybdate into molybdoproteins [Escherichia coli K12]
>gi|1787000|gb|AAC73869.1| molybdopterin biosynthesis, protein B [Escherichia coli K12]
--- CLUSTER 453 ---
>gi|1573306|gb|AAC21999.1| nitrogen regulatory protein P-II (glnB) [Haemophilus influenzae Rd]
>gi|1786655|gb|AAC73553.1| nitrogen regulatory protein P-II 2 [Escherichia coli K12]
>gi|1788904|gb|AAC75606.1| regulatory protein P-II for glutamine synthetase [Escherichia coli K12]
--- CLUSTER 454 ---
>gi|1787979|gb|AAC74758.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788838|gb|AAC75546.1| putative permease [Escherichia coli K12]
--- CLUSTER 455 ---
>gi|1573307|gb|AAC22000.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1787885|gb|AAC74673.1| putative transport protein [Escherichia coli K12]
>gi|1788838|gb|AAC75546.1| putative permease [Escherichia coli K12]
>gi|1789885|gb|AAC76499.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 456 ---
>gi|1573311|gb|AAC22002.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789330|gb|AAC75997.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 457 ---
>gi|1573312|gb|AAC22003.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789329|gb|AAC75996.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 458 ---
>gi|1573314|gb|AAC22005.1| napD protein (napD) [Haemophilus influenzae Rd]
>gi|1788535|gb|AAC75267.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 459 ---
>gi|1573315|gb|AAC22006.1| ferredoxin-type protein (napG) [Haemophilus influenzae Rd]
>gi|1788533|gb|AAC75265.1| ferredoxin-type protein: electron transfer [Escherichia coli K12]
--- CLUSTER 460 ---
>gi|1787226|gb|AAC74077.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788532|gb|AAC75264.1| ferredoxin-type protein: electron transfer [Escherichia coli K12]
--- CLUSTER 461 ---
>gi|1573316|gb|AAC22007.1| ferredoxin-type protein (napH) [Haemophilus influenzae Rd]
>gi|1788532|gb|AAC75264.1| ferredoxin-type protein: electron transfer [Escherichia coli K12]
--- CLUSTER 462 ---
>gi|1573317|gb|AAC22008.1| periplasmic nitrate reductase (napB) [Haemophilus influenzae Rd]
>gi|1788531|gb|AAC75263.1| cytochrome c-type protein [Escherichia coli K12]
--- CLUSTER 463 ---
>gi|1573319|gb|AAC22010.1| adenylate kinase (adk) [Haemophilus influenzae Rd]
>gi|1786680|gb|AAC73576.1| adenylate kinase activity; pleiotropic effects on glycerol-3-phosphate acyltransferase activity [Escherichia coli K12]
--- CLUSTER 464 ---
>gi|1573320|gb|AAC22011.1| permease, putative [Haemophilus influenzae Rd]
>gi|1786636|gb|AAC73536.1| regulates beta-lactamase synthesis [Escherichia coli K12]
--- CLUSTER 465 ---
>gi|1573325|gb|AAC22016.1| thiamine biosynthesis protein, putative [Haemophilus influenzae Rd]
>gi|1787167|gb|AAC74022.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 466 ---
>gi|1573332|gb|AAC22023.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788865|gb|AAC75570.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 467 ---
>gi|1573336|gb|AAC22025.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788864|gb|AAC75569.1| putative membrane protein [Escherichia coli K12]
--- CLUSTER 468 ---
>gi|1573337|gb|AAC22026.1| gcpE protein (gcpE) [Haemophilus influenzae Rd]
>gi|1788863|gb|AAC75568.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 469 ---
>gi|1573338|gb|AAC22027.1| histidyl-tRNA synthetase (hisS) [Haemophilus influenzae Rd]
>gi|1788861|gb|AAC75567.1| histidine tRNA synthetase [Escherichia coli K12]
--- CLUSTER 470 ---
>gi|1573339|gb|AAC22028.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788860|gb|AAC75566.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 471 ---
>gi|1573340|gb|AAC22029.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788873|gb|AAC75577.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 472 ---
>gi|1573341|gb|AAC22030.1| ferredoxin (fdx-1) [Haemophilus influenzae Rd]
>gi|1788874|gb|AAC75578.1| [2FE-2S] ferredoxin, electron carrer protein [Escherichia coli K12]
--- CLUSTER 473 ---
>gi|1573343|gb|AAC22036.1| H. influenzae predicted coding region HI0374 [Haemophilus influenzae Rd]
>gi|1786906|gb|AAC73784.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 474 ---
>gi|1573343|gb|AAC22036.1| H. influenzae predicted coding region HI0374 [Haemophilus influenzae Rd]
>gi|1786907|gb|AAC73785.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 475 ---
>gi|1573344|gb|AAC22032.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788876|gb|AAC75580.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 476 ---
>gi|1573346|gb|AAC22034.1| iscU protein (iscU) [Haemophilus influenzae Rd]
>gi|1788878|gb|AAC75582.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 477 ---
>gi|1573349|gb|AAC22037.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788880|gb|AAC75584.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790621|gb|AAC77135.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 478 --- SPLIT INTO 1703 1704
>gi|1573350|gb|AAC22038.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788881|gb|AAC75585.1| putative ATP synthase beta subunit [Escherichia coli K12]
>gi|1790865|gb|AAC77356.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 479 ---
>gi|1573352|gb|AAC22040.1| colicin tolerance protein (tolB) [Haemophilus influenzae Rd]
>gi|1786961|gb|AAC73834.1| periplasmic protein involved in the tonb-independent uptake of group A colicins [Escherichia coli K12]
--- CLUSTER 480 ---
>gi|1573356|gb|AAC22044.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786647|gb|AAC73546.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1786957|gb|AAC73830.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 481 ---
>gi|1573357|gb|AAC22045.1| ATP-dependent helicase (dinG) [Haemophilus influenzae Rd]
>gi|1787018|gb|AAC73886.1| probably ATP-dependent helicase [Escherichia coli K12]
>gi|1788110|gb|AAC74878.1| putative enzyme [Escherichia coli K12]
--- CLUSTER 482 ---
>gi|1573358|gb|AAC22046.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788109|gb|AAC74877.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 483 ---
>gi|1573514|gb|AAC22187.1| O-sialoglycoprotein endopeptidase (gcp) [Haemophilus influenzae Rd]
>gi|1789445|gb|AAC76100.1| putative O-sialoglycoprotein endopeptidase [Escherichia coli K12]
--- CLUSTER 484 ---
>gi|1573358|gb|AAC22046.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789445|gb|AAC76100.1| putative O-sialoglycoprotein endopeptidase [Escherichia coli K12]
--- CLUSTER 485 ---
>gi|1573359|gb|AAC22047.1| outer membrane protein [Haemophilus influenzae Rd]
>gi|1788108|gb|AAC74876.1| putative outer membrane protein [Escherichia coli K12]
>gi|1789922|gb|AAC76531.1| outer membrane protein induced after carbon starvation [Escherichia coli K12]
--- CLUSTER 486 ---
>gi|1573361|gb|AAC22048.1| ribonuclease D (rnd) [Haemophilus influenzae Rd]
>gi|1788105|gb|AAC74874.1| RNase D, processes tRNA precursor [Escherichia coli K12]
--- CLUSTER 487 ---
>gi|1573365|gb|AAC22052.1| conserved hypothetical GTP-binding protein [Haemophilus influenzae Rd]
>gi|1787454|gb|AAC74287.1| putative GTP-binding protein [Escherichia coli K12]
--- CLUSTER 488 ---
>gi|1573366|gb|AAC22053.1| peptidyl-tRNA hydrolase (pth) [Haemophilus influenzae Rd]
>gi|1787455|gb|AAC74288.1| peptidyl-tRNA hydrolase [Escherichia coli K12]
--- CLUSTER 489 ---
>gi|1573377|gb|AAC22054.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788971|gb|AAC75667.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 490 ---
>gi|1573367|gb|AAC22055.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787373|gb|AAC74212.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 491 ---
>gi|1573368|gb|AAC22056.1| exodeoxyribonuclease VII, large subunit (xseA) [Haemophilus influenzae Rd]
>gi|1788856|gb|AAC75562.1| exonuclease VII, large subunit [Escherichia coli K12]
--- CLUSTER 492 ---
>gi|1573369|gb|AAC22057.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788810|gb|AAC75520.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789412|gb|AAC76070.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 493 ---
>gi|1573370|gb|AAC22058.1| lacZ expression regulator (icc) [Haemophilus influenzae Rd]
>gi|1789410|gb|AAC76068.1| regulator of lacZ [Escherichia coli K12]
--- CLUSTER 494 ---
>gi|1573372|gb|AAC22060.1| long-chain fatty acid transport protein (fadL) [Haemophilus influenzae Rd]
>gi|1788686|gb|AAC75404.1| transport of long-chain fatty acids; sensitivity to phage T2 [Escherichia coli K12]
--- CLUSTER 495 ---
>gi|1573373|gb|AAC22061.1| methylated-DNA--protein-cysteine methyltransferase (dat1) [Haemophilus influenzae Rd]
>gi|1786659|gb|AAC73557.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787596|gb|AAC74417.1| O-6-alkylguanine-DNA/cysteine-protein methyltransferase [Escherichia coli K12]
>gi|1788542|gb|AAC75273.1| O6-methylguanine-DNA methyltransferase; transcription activator/repressor [Escherichia coli K12]
--- CLUSTER 496 ---
>gi|1573374|gb|AAC22062.1| DNA mismatch repair protein (mutH) [Haemophilus influenzae Rd]
>gi|1789196|gb|AAC75870.1| methyl-directed mismatch repair [Escherichia coli K12]
--- CLUSTER 497 ---
>gi|1573375|gb|AAC22063.1| cell cycle protein (mesJ) [Haemophilus influenzae Rd]
>gi|1786386|gb|AAC73299.1| cell cycle protein [Escherichia coli K12]
--- CLUSTER 498 ---
>gi|1573379|gb|AAC22065.1| acetyl-CoA carboxylase, carboxyl transferase (accA) [Haemophilus influenzae Rd]
>gi|1786382|gb|AAC73296.1| acetylCoA carboxylase, carboxytransferase component, alpha subunit [Escherichia coli K12]
--- CLUSTER 499 ---
>gi|1573384|gb|AAC22070.1| host factor-I protein (hfq) [Haemophilus influenzae Rd]
>gi|1790614|gb|AAC77129.1| host factor I for bacteriophage Q beta replication, a growth-related protein [Escherichia coli K12]
--- CLUSTER 500 ---
>gi|1573389|gb|AAC22073.1| hydroxyethylthiazole kinase [Haemophilus influenzae Rd]
>gi|1788421|gb|AAC75165.1| hydoxyethylthiazole kinase [Escherichia coli K12]
--- CLUSTER 501 ---
>gi|1573391|gb|AAC22075.1| thiamin-phosphate pyrophosphorylase [Haemophilus influenzae Rd]
>gi|1790426|gb|AAC76967.1| thiamin biosynthesis, thiazole moiety [Escherichia coli K12]
--- CLUSTER 502 --- SPLIT INTO 1705 1706
>gi|1573393|gb|AAC22077.1| protease, putative [Haemophilus influenzae Rd]
>gi|1787705|gb|AAC74517.1| putative collagenase [Escherichia coli K12]
>gi|1788397|gb|AAC75142.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789548|gb|AAC76192.1| putative collagenase [Escherichia coli K12]
--- CLUSTER 503 --- SPLIT INTO 1707 1708
>gi|1573875|gb|AAC22519.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788935|gb|AAC75634.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790083|gb|AAC76675.1| putative RNA methylase [Escherichia coli K12]
>gi|1790623|gb|AAC77137.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 504 ---
>gi|1573396|gb|AAC22080.1| rRNA methylase, putative [Haemophilus influenzae Rd]
>gi|1788935|gb|AAC75634.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 505 ---
>gi|1573400|gb|AAC22084.1| phosphatidylserine synthase (pssA) [Haemophilus influenzae Rd]
>gi|1788940|gb|AAC75638.1| phosphatidylserine synthase; phospholipid synthesis [Escherichia coli K12]
--- CLUSTER 506 ---
>gi|1573402|gb|AAC22086.1| Na+/H+ antiporter (nhaB) [Haemophilus influenzae Rd]
>gi|1787435|gb|AAC74270.1| Na+/H+ antiporter, pH independent [Escherichia coli K12]
--- CLUSTER 507 ---
>gi|1573403|gb|AAC22087.1| disulfide bond formation protein B (dsbB) [Haemophilus influenzae Rd]
>gi|1787433|gb|AAC74269.1| reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. [Escherichia coli K12]
--- CLUSTER 508 ---
>gi|1573406|gb|AAC22090.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790432|gb|AAC76973.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 509 ---
>gi|1573407|gb|AAC22091.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790429|gb|AAC76970.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 510 ---
>gi|1573408|gb|AAC22092.1| orfG protein [Haemophilus influenzae Rd]
>gi|1789819|gb|AAC76439.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 511 ---
>gi|1573409|gb|AAC22093.1| competence protein F (comF) [Haemophilus influenzae Rd]
>gi|1789818|gb|AAC76438.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 512 ---
>gi|1573410|gb|AAC22094.1| competence protein E (comE) [Haemophilus influenzae Rd]
>gi|1789722|gb|AAC76350.1| putative general protein secretion protein [Escherichia coli K12]
>gi|1789793|gb|AAC76416.1| putative transport portein [Escherichia coli K12]
--- CLUSTER 513 ---
>gi|1573417|gb|AAC22100.1| orfJ protein [Haemophilus influenzae Rd]
>gi|1789914|gb|AAC76524.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 514 ---
>gi|1573418|gb|AAC22101.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786677|gb|AAC73573.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 515 ---
>gi|1573419|gb|AAC22102.1| recombination protein (recR) [Haemophilus influenzae Rd]
>gi|1786678|gb|AAC73574.1| recombination and repair [Escherichia coli K12]
--- CLUSTER 516 ---
>gi|1574197|gb|AAC23012.1| DNA topoisomerase I (topA) [Haemophilus influenzae Rd]
>gi|1787529|gb|AAC74356.1| DNA topoisomerase type I, omega protein [Escherichia coli K12]
--- CLUSTER 517 ---
>gi|1787529|gb|AAC74356.1| DNA topoisomerase type I, omega protein [Escherichia coli K12]
>gi|1788061|gb|AAC74833.1| DNA topoisomerase III [Escherichia coli K12]
--- CLUSTER 518 ---
>gi|1573420|gb|AAC22103.1| DNA topoisomerase III (topB) [Haemophilus influenzae Rd]
>gi|1788061|gb|AAC74833.1| DNA topoisomerase III [Escherichia coli K12]
--- CLUSTER 519 ---
>gi|1573421|gb|AAC22104.1| protein-export membrane protein (secG) [Haemophilus influenzae Rd]
>gi|1789565|gb|AAC76207.1| protein export - membrane protein [Escherichia coli K12]
--- CLUSTER 520 ---
>gi|1573430|gb|AAC22114.1| thymidylate kinase [Haemophilus influenzae Rd]
>gi|1787340|gb|AAC74182.1| thymidylate kinase [Escherichia coli K12]
--- CLUSTER 521 ---
>gi|1573431|gb|AAC22115.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787339|gb|AAC74181.1| putative thymidylate kinase (EC 2.7.4.9) [Escherichia coli K12]
--- CLUSTER 522 ---
>gi|1574034|gb|AAC22665.1| peptidyl-prolyl cis-trans isomerse, putative [Haemophilus influenzae Rd]
>gi|1786645|gb|AAC73544.1| putative protease maturation protein [Escherichia coli K12]
--- CLUSTER 523 ---
>gi|1574034|gb|AAC22665.1| peptidyl-prolyl cis-trans isomerse, putative [Haemophilus influenzae Rd]
>gi|1786238|gb|AAC73164.1| survival protein [Escherichia coli K12]
--- CLUSTER 524 ---
>gi|1786238|gb|AAC73164.1| survival protein [Escherichia coli K12]
>gi|1790211|gb|AAC76780.1| peptidyl-prolyl cis-trans isomerase C (rotamase C) [Escherichia coli K12]
--- CLUSTER 525 ---
>gi|1573432|gb|AAC22116.1| stationary phase survival protein SurA, putative [Haemophilus influenzae Rd]
>gi|1786238|gb|AAC73164.1| survival protein [Escherichia coli K12]
--- CLUSTER 526 ---
>gi|1573434|gb|AAC22118.1| mazG protein (mazG) [Haemophilus influenzae Rd]
>gi|1789144|gb|AAC75823.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 527 ---
>gi|1573440|gb|AAC22121.1| ATP-dependent proteinase (lon) [Haemophilus influenzae Rd]
>gi|1786643|gb|AAC73542.1| DNA-binding, ATP-dependent protease La; heat shock K-protein [Escherichia coli K12]
--- CLUSTER 528 --- SPLIT INTO 1709 1710
>gi|1573441|gb|AAC22122.1| oxygen-independent coproporphyrinogen III oxidase, putative [Haemophilus influenzae Rd]
>gi|1789325|gb|AAC75992.1| putative oxidase [Escherichia coli K12]
>gi|1790298|gb|AAC76864.1| O2-independent coproporphyrinogen III oxidase [Escherichia coli K12]
--- CLUSTER 529 ---
>gi|1573442|gb|AAC22123.1| ribose 5-phosphate isomerase A (rpiA) [Haemophilus influenzae Rd]
>gi|1789280|gb|AAC75951.1| ribosephosphate isomerase, constitutive [Escherichia coli K12]
--- CLUSTER 530 ---
>gi|1573444|gb|AAC22125.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789265|gb|AAC75936.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 531 ---
>gi|1573445|gb|AAC22126.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790075|gb|AAC76668.1| putative alpha helix protein [Escherichia coli K12]
--- CLUSTER 532 ---
>gi|1573446|gb|AAC22127.1| ATP phosphoribosyltransferase (hisG) [Haemophilus influenzae Rd]
>gi|1788330|gb|AAC75080.1| ATP phosphoribosyltransferase [Escherichia coli K12]
--- CLUSTER 533 ---
>gi|1573447|gb|AAC22128.1| histidinol dehydrogenase (hisD) [Haemophilus influenzae Rd]
>gi|1788331|gb|AAC75081.1| L-histidinal:NAD+ oxidoreductase; L-histidinol:NAD+ oxidoreductase [Escherichia coli K12]
--- CLUSTER 534 ---
>gi|1573451|gb|AAC22131.1| amidotransferase (hisH) [Haemophilus influenzae Rd]
>gi|1788334|gb|AAC75084.1| glutamine amidotransferase subunit of heterodimer with HisF = imidazole glycerol phosphate synthase holoenzyme [Escherichia coli K12]
--- CLUSTER 535 ---
>gi|1573454|gb|AAC22134.1| phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase (hisIE) [Haemophilus influenzae Rd]
>gi|2367128|gb|AAC75087.1| phosphoribosyl-amp cyclohydrolase; phosphoribosyl-ATP pyrophosphatase [Escherichia coli K12]
--- CLUSTER 536 ---
>gi|1573456|gb|AAC22136.1| ATP synthase F1, subunit epsilon (atpC) [Haemophilus influenzae Rd]
>gi|1790169|gb|AAC76754.1| membrane-bound ATP synthase, F1 sector, epsilon-subunit [Escherichia coli K12]
--- CLUSTER 537 ---
>gi|1573458|gb|AAC22138.1| ATP synthase F1, subunit gamma (atpG) [Haemophilus influenzae Rd]
>gi|1790171|gb|AAC76756.1| membrane-bound ATP synthase, F1 sector, gamma-subunit [Escherichia coli K12]
--- CLUSTER 538 ---
>gi|1573460|gb|AAC22140.1| ATP synthase F1, subunit delta (atpH) [Haemophilus influenzae Rd]
>gi|1790173|gb|AAC76758.1| membrane-bound ATP synthase, F1 sector, delta-subunit [Escherichia coli K12]
--- CLUSTER 539 ---
>gi|1573461|gb|AAC22141.1| ATP synthase F0, subunit b (atpF) [Haemophilus influenzae Rd]
>gi|1790174|gb|AAC76759.1| membrane-bound ATP synthase, F0 sector, subunit b [Escherichia coli K12]
--- CLUSTER 540 ---
>gi|1573462|gb|AAC22142.1| ATP synthase F0, subunit c (atpE) [Haemophilus influenzae Rd]
>gi|1790175|gb|AAC76760.1| membrane-bound ATP synthase, F0 sector, subunit c [Escherichia coli K12]
--- CLUSTER 541 ---
>gi|1573463|gb|AAC22143.1| ATP synthase F0, subunit a (atpB) [Haemophilus influenzae Rd]
>gi|1790176|gb|AAC76761.1| membrane-bound ATP synthase, F0 sector, subunit a [Escherichia coli K12]
--- CLUSTER 542 ---
>gi|1573466|gb|AAC22146.1| glucose-inhibited division protein (gidB) [Haemophilus influenzae Rd]
>gi|1790179|gb|AAC76763.1| glucose-inhibited division; chromosome replication? [Escherichia coli K12]
--- CLUSTER 543 ---
>gi|1573468|gb|AAC22147.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1573552|gb|AAC22223.1| phosphoglycolate phosphatase (gph) [Haemophilus influenzae Rd]
>gi|1787576|gb|AAC74399.1| putative beta-phosphoglucomutase [Escherichia coli K12]
>gi|1788021|gb|AAC74797.1| putative phosphatase [Escherichia coli K12]
>gi|1788630|gb|AAC75353.1| putative phosphatase [Escherichia coli K12]
>gi|1789046|gb|AAC75737.1| putative phosphatase [Escherichia coli K12]
>gi|1789787|gb|AAC76410.1| phosphoglycolate phosphatase [Escherichia coli K12]
>gi|1790151|gb|AAC76738.1| putative phosphatase [Escherichia coli K12]
--- CLUSTER 544 ---
>gi|1573469|gb|AAC22148.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789045|gb|AAC75736.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 545 ---
>gi|1573470|gb|AAC22149.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789043|gb|AAC75734.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 546 ---
>gi|1573472|gb|AAC22151.1| acid phosphatase [Haemophilus influenzae Rd]
>gi|2367341|gb|AAC77025.1| diadenosine tetraphosphatase [Escherichia coli K12]
--- CLUSTER 547 ---
>gi|1573473|gb|AAC22153.1| heat shock protein (hslV) [Haemophilus influenzae Rd]
>gi|1790367|gb|AAC76914.1| heat shock protein hslVU, proteasome-related peptidase subunit [Escherichia coli K12]
--- CLUSTER 548 ---
>gi|1573476|gb|AAC22156.1| oxidoreductase, putative [Haemophilus influenzae Rd]
>gi|1787559|gb|AAC74383.1| probable oxidoreductase [Escherichia coli K12]
--- CLUSTER 549 ---
>gi|1573481|gb|AAC22158.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790266|gb|AAC76835.1| putative alpha helix chain [Escherichia coli K12]
--- CLUSTER 550 ---
>gi|1573482|gb|AAC22159.1| high affinity ribose transport protein (rbsD) [Haemophilus influenzae Rd]
>gi|1790189|gb|AAC76771.1| D-ribose high-affinity transport system; membrane-associated protein [Escherichia coli K12]
--- CLUSTER 551 ---
>gi|1573488|gb|AAC22165.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1789376|gb|AAC76038.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 552 ---
>gi|1573489|gb|AAC22166.1| S-adenosylmethionine:2-demethylmenaquinone methyltransferase (menG) [Haemophilus influenzae Rd]
>gi|1790364|gb|AAC76911.1| menaquinone biosynthesis, unknown [Escherichia coli K12]
--- CLUSTER 553 ---
>gi|1573490|gb|AAC22167.1| 1,4-dihydroxy-2-naphthoate octaprenyltransferase (menA) [Haemophilus influenzae Rd]
>gi|1790365|gb|AAC76912.1| 1,4-dihydroxy-2-naphthoate --> dimethylmenaquinone [Escherichia coli K12]
--- CLUSTER 554 ---
>gi|1573491|gb|AAC22168.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786393|gb|AAC73306.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 555 ---
>gi|1573492|gb|AAC22169.1| tellurite resistance protein (tehA) [Haemophilus influenzae Rd]
>gi|1787699|gb|AAC74511.1| tellurite resistance [Escherichia coli K12]
--- CLUSTER 556 ---
>gi|1573495|gb|AAC22172.1| DNA-directed RNA polymerase, beta' chain (rpoC) [Haemophilus influenzae Rd]
>gi|2367335|gb|AAC76962.1| RNA polymerase, beta prime subunit [Escherichia coli K12]
--- CLUSTER 557 ---
>gi|1573496|gb|AAC22173.1| DNA-directed RNA polymerase, beta chain (rpoB) [Haemophilus influenzae Rd]
>gi|1790419|gb|AAC76961.1| RNA polymerase, beta subunit [Escherichia coli K12]
--- CLUSTER 558 ---
>gi|1573499|gb|AAC22174.1| ribosomal protein L1 (rpL1) [Haemophilus influenzae Rd]
>gi|1790416|gb|AAC76958.1| 50S ribosomal subunit protein L1, regulates synthesis of L1 and L11 [Escherichia coli K12]
--- CLUSTER 559 ---
>gi|1573500|gb|AAC22175.1| ribosomal protein L11 (rpL11) [Haemophilus influenzae Rd]
>gi|2367334|gb|AAC76957.1| 50S ribosomal subunit protein L11 [Escherichia coli K12]
--- CLUSTER 560 ---
>gi|1573502|gb|AAC22177.1| transport protein, putative [Haemophilus influenzae Rd]
>gi|1788485|gb|AAC75222.1| putative transport system permease protein [Escherichia coli K12]
>gi|1788488|gb|AAC75225.1| putative transport system permease protein [Escherichia coli K12]
>gi|1788737|gb|AAC75452.1| permease of transport system for 3 nucleosides [Escherichia coli K12]
--- CLUSTER 561 ---
>gi|1573504|gb|AAC22179.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790840|gb|AAC77333.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 562 ---
>gi|1573507|gb|AAC22182.1| fructose-bisphosphate aldolase (fba) [Haemophilus influenzae Rd]
>gi|1789293|gb|AAC75962.1| fructose-bisphosphate aldolase, class II [Escherichia coli K12]
--- CLUSTER 563 ---
>gi|1573508|gb|AAC22183.1| phosphoglycerate kinase (pgk) [Haemophilus influenzae Rd]
>gi|1789294|gb|AAC75963.1| phosphoglycerate kinase [Escherichia coli K12]
--- CLUSTER 564 ---
>gi|1573511|gb|AAC22184.1| ferredoxin (fdx-2) [Haemophilus influenzae Rd]
>gi|1788914|gb|AAC75615.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 565 ---
>gi|1573513|gb|AAC22186.1| thymidine kinase (tdk) [Haemophilus influenzae Rd]
>gi|1787490|gb|AAC74320.1| thymidine kinase [Escherichia coli K12]
--- CLUSTER 566 ---
>gi|1573515|gb|AAC22188.1| ribosomal protein S21 (rpS21) [Haemophilus influenzae Rd]
>gi|1789446|gb|AAC76101.1| 30S ribosomal subunit protein S21 [Escherichia coli K12]
--- CLUSTER 567 ---
>gi|1573516|gb|AAC22189.1| DNA primase (dnaG) [Haemophilus influenzae Rd]
>gi|1789447|gb|AAC76102.1| DNA biosynthesis; DNA primase [Escherichia coli K12]
--- CLUSTER 568 ---
>gi|1573527|gb|AAC22200.1| chaperonin (groES) [Haemophilus influenzae Rd]
>gi|1790585|gb|AAC77102.1| GroES, 10 Kd chaperone binds to Hsp60 in pres. Mg-ATP, suppressing its ATPase activity [Escherichia coli K12]
--- CLUSTER 569 ---
>gi|1573528|gb|AAC22201.1| heat shock protein (groEL) [Haemophilus influenzae Rd]
>gi|1790586|gb|AAC77103.1| GroEL, chaperone Hsp60, peptide-dependent ATPase, heat shock protein [Escherichia coli K12]
--- CLUSTER 570 ---
>gi|1573529|gb|AAC22202.1| ribosomal protein L9 (rpL9) [Haemophilus influenzae Rd]
>gi|1790647|gb|AAC77160.1| 50S ribosomal subunit protein L9 [Escherichia coli K12]
--- CLUSTER 571 ---
>gi|1573530|gb|AAC22203.1| ribosomal protein S18 (rpS18) [Haemophilus influenzae Rd]
>gi|1790646|gb|AAC77159.1| 30S ribosomal subunit protein S18 [Escherichia coli K12]
--- CLUSTER 572 ---
>gi|1573531|gb|AAC22204.1| primosomal replication protein N (priB) [Haemophilus influenzae Rd]
>gi|1790645|gb|AAC77158.1| primosomal replication protein N [Escherichia coli K12]
--- CLUSTER 573 ---
>gi|1573532|gb|AAC22205.1| ribosomal protein S6 (rpS6) [Haemophilus influenzae Rd]
>gi|1790644|gb|AAC77157.1| 30S ribosomal subunit protein S6 [Escherichia coli K12]
--- CLUSTER 574 ---
>gi|1573533|gb|AAC22206.1| translation initiation factor 1 (infA) [Haemophilus influenzae Rd]
>gi|1787110|gb|AAC73970.1| protein chain initiation factor IF-1 [Escherichia coli K12]
--- CLUSTER 575 ---
>gi|1573534|gb|AAC22207.1| dimethyladenosine transferase (ksgA) [Haemophilus influenzae Rd]
>gi|1786236|gb|AAC73162.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Escherichia coli K12]
--- CLUSTER 576 ---
>gi|1788143|gb|AAC74908.1| protein phosphatase 1 modulates phosphoproteins, signals protein misfolding [Escherichia coli K12]
>gi|1789090|gb|AAC75776.1| protein phosphatase 2 [Escherichia coli K12]
--- CLUSTER 577 ---
>gi|1786234|gb|AAC73160.1| diadenosine tetraphosphatase [Escherichia coli K12]
>gi|1789090|gb|AAC75776.1| protein phosphatase 2 [Escherichia coli K12]
--- CLUSTER 578 ---
>gi|1573537|gb|AAC22209.1| diadenosine-tetraphosphatase (apaH) [Haemophilus influenzae Rd]
>gi|1786234|gb|AAC73160.1| diadenosine tetraphosphatase [Escherichia coli K12]
--- CLUSTER 579 --- SPLIT INTO 1711 1712
>gi|1573539|gb|AAC22210.1| 6-phosphogluconate dehydrogenase, decarboxylating (gnd) [Haemophilus influenzae Rd]
>gi|1574042|gb|AAC22671.1| 3-hydroxyisobutyrate dehydrogenase, putative [Haemophilus influenzae Rd]
>gi|1786719|gb|AAC73611.1| putative oxidoreductase [Escherichia coli K12]
>gi|1788341|gb|AAC75090.1| gluconate-6-phosphate dehydrogenase, decarboxylating [Escherichia coli K12]
>gi|1789092|gb|AAC75778.1| putative dehydrogenase [Escherichia coli K12]
>gi|1789513|gb|AAC76159.1| putative dehydrogenase [Escherichia coli K12]
>gi|1790315|gb|AAD13444.1| putative dehydrogenase [Escherichia coli K12]
--- CLUSTER 580 ---
>gi|1573543|gb|AAC22213.1| glucose-6-phosphate 1-dehydrogenase (zwf) [Haemophilus influenzae Rd]
>gi|1788158|gb|AAC74922.1| glucose-6-phosphate dehydrogenase [Escherichia coli K12]
--- CLUSTER 581 ---
>gi|1573549|gb|AAC22220.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789803|gb|AAC76425.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 582 ---
>gi|1573551|gb|AAC22222.1| aspartate--ammonia ligase (asnA) [Haemophilus influenzae Rd]
>gi|1790183|gb|AAC76767.1| asparagine synthetase A [Escherichia coli K12]
--- CLUSTER 583 ---
>gi|1573553|gb|AAC22224.1| ribulose-phosphate 3-epimerase (dod) [Haemophilus influenzae Rd]
>gi|1789788|gb|AAC76411.1| D-ribulose-5-phosphate 3-epimerase [Escherichia coli K12]
>gi|1790523|gb|AAC77046.1| putative epimerase [Escherichia coli K12]
>gi|1790754|gb|AAC77257.1| putative epimerase [Escherichia coli K12]
--- CLUSTER 584 ---
>gi|1573557|gb|AAC22228.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790401|gb|AAC76945.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 585 ---
>gi|1574376|gb|AAC23182.1| glutaredoxin (grx) [Haemophilus influenzae Rd]
>gi|1787073|gb|AAC73936.1| glutaredoxin1 redox coenzyme for glutathione-dependent ribonucleotide reductase [Escherichia coli K12]
>gi|1790039|gb|AAC76634.1| glutaredoxin 3 [Escherichia coli K12]
--- CLUSTER 586 ---
>gi|1573561|gb|AAC22230.1| membrane protein [Haemophilus influenzae Rd]
>gi|1790039|gb|AAC76634.1| glutaredoxin 3 [Escherichia coli K12]
--- CLUSTER 587 ---
>gi|1573562|gb|AAC22231.1| slyX protein (slyX) [Haemophilus influenzae Rd]
>gi|1789747|gb|AAC76373.1| host factor for lysis of phiX174 infection [Escherichia coli K12]
--- CLUSTER 588 ---
>gi|1573563|gb|AAC22232.1| FkbP-type peptidyl-prolyl cis-trans isomerase (fkpA) [Haemophilus influenzae Rd]
>gi|1789745|gb|AAC76372.1| FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) [Escherichia coli K12]
>gi|1790652|gb|AAC77164.1| FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase) [Escherichia coli K12]
--- CLUSTER 589 ---
>gi|1573564|gb|AAC22233.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789744|gb|AAC76371.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 590 ---
>gi|1573565|gb|AAC22234.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789743|gb|AAC76370.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 591 ---
>gi|1573566|gb|AAC22235.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789742|gb|AAC76369.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 592 ---
>gi|1573568|gb|AAC22238.1| ribosomal protein S7 (rpS7) [Haemophilus influenzae Rd]
>gi|1789739|gb|AAC76366.1| 30S ribosomal subunit protein S7, initiates assembly [Escherichia coli K12]
--- CLUSTER 593 ---
>gi|1573569|gb|AAC22239.1| ribosomal protein S12 (rps12) [Haemophilus influenzae Rd]
>gi|1789740|gb|AAC76367.1| 30S ribosomal subunit protein S12 [Escherichia coli K12]
--- CLUSTER 594 ---
>gi|1573570|gb|AAC22240.1| glucose inhibited division protein (gidA) [Haemophilus influenzae Rd]
>gi|2367273|gb|AAC76764.1| glucose-inhibited division; chromosome replication? [Escherichia coli K12]
--- CLUSTER 595 --- SPLIT INTO 1713 1714
>gi|1573574|gb|AAC22243.1| hydrolase [Haemophilus influenzae Rd]
>gi|1787598|gb|AAC74419.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787599|gb|AAC74420.1| putative aminohydrolase (EC 3.5.1.14) [Escherichia coli K12]
--- CLUSTER 596 --- SPLIT INTO 1715 1716
>gi|1573575|gb|AAC22249.1| H. influenzae predicted coding region HI0585 [Haemophilus influenzae Rd]
>gi|1786839|gb|AAC73722.1| transport of dicarboxylates [Escherichia coli K12]
>gi|1789622|gb|AAC76259.1| putative transport protein [Escherichia coli K12]
--- CLUSTER 597 ---
>gi|1573577|gb|AAC22244.1| peptidase E (pepE) [Haemophilus influenzae Rd]
>gi|1790452|gb|AAC76991.1| peptidase E, a dipeptidase where amino-terminal residue is aspartate [Escherichia coli K12]
--- CLUSTER 598 ---
>gi|1573578|gb|AAC22245.1| N-carbamyl-L-amino acid amidohydrolase [Haemophilus influenzae Rd]
>gi|1786726|gb|AAC73618.1| putative hydantoin utilization protein [Escherichia coli K12]
--- CLUSTER 599 ---
>gi|1573581|gb|AAC22248.1| ornithine decarboxylase (speF) [Haemophilus influenzae Rd]
>gi|1786384|gb|AAC73297.1| lysine decarboxylase 2, constitutive [Escherichia coli K12]
>gi|1786909|gb|AAC73787.1| ornithine decarboxylase isozyme, inducible [Escherichia coli K12]
>gi|1789337|gb|AAC76002.1| ornithine decarboxylase isozyme [Escherichia coli K12]
>gi|1790558|gb|AAC77078.1| biodegradative arginine decarboxylase [Escherichia coli K12]
>gi|1790573|gb|AAC77092.1| lysine decarboxylase 1 [Escherichia coli K12]
--- CLUSTER 600 ---
>gi|1573583|gb|AAC22251.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1788636|gb|AAC75358.1| putative S-transferase [Escherichia coli K12]
--- CLUSTER 601 ---
>gi|1573584|gb|AAC22252.1| carbamate kinase (arcC) [Haemophilus influenzae Rd]
>gi|1786516|gb|AAC73426.1| putative kinase (EC 2.7.2.2). [Escherichia coli K12]
>gi|1786732|gb|AAC73623.1| putative carbamate kinase (EC 2.7.2.2) [Escherichia coli K12]
>gi|1789238|gb|AAC75912.1| putative kinase [Escherichia coli K12]
--- CLUSTER 602 ---
>gi|1573585|gb|AAC22253.1| ornithine carbamoyltransferase (arcB) [Haemophilus influenzae Rd]
>gi|1786469|gb|AAC73376.1| ornithine carbamoyltransferase 2, chain F [Escherichia coli K12]
>gi|2367364|gb|AAC77202.1| aspartate carbamoyltransferase, catalytic subunit [Escherichia coli K12]
>gi|1790703|gb|AAC77211.1| ornithine carbamoyltransferase 1 [Escherichia coli K12]
--- CLUSTER 603 ---
>gi|3212195|gb|AAC22255.1| crcB protein [Haemophilus influenzae Rd]
>gi|1786842|gb|AAC73725.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 604 ---
>gi|1573587|gb|AAC22256.1| regulatory protein (recX) [Haemophilus influenzae Rd]
>gi|1789050|gb|AAC75740.1| regulator, OraA protein [Escherichia coli K12]
--- CLUSTER 605 ---
>gi|1573588|gb|AAC22257.1| recA protein (recA) [Haemophilus influenzae Rd]
>gi|1789051|gb|AAC75741.1| DNA strand exchange and renaturation, DNA-dependent ATPase, DNA- and ATP-dependent coprotease [Escherichia coli K12]
--- CLUSTER 606 ---
>gi|1573592|gb|AAC22258.1| DNA transformation protein (tfoX) [Haemophilus influenzae Rd]
>gi|1787193|gb|AAC74045.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 607 ---
>gi|1573594|gb|AAC22260.1| hemY protein (hemY) [Haemophilus influenzae Rd]
>gi|1790234|gb|AAC76805.1| a late step of protoheme IX synthesis [Escherichia coli K12]
--- CLUSTER 608 ---
>gi|1573595|gb|AAC22261.1| uroporphyrin-III C-methyltransferase (hemX) [Haemophilus influenzae Rd]
>gi|1790235|gb|AAC76806.1| uroporphyrinogen III methylase [Escherichia coli K12]
--- CLUSTER 609 ---
>gi|3212196|gb|AAC22263.1| H. influenzae predicted coding region HI0602.1 [Haemophilus influenzae Rd]
>gi|1790235|gb|AAC76806.1| uroporphyrinogen III methylase [Escherichia coli K12]
--- CLUSTER 610 ---
>gi|1573596|gb|AAC22262.1| adenylate cyclase (cyaA) [Haemophilus influenzae Rd]
>gi|1790238|gb|AAC76809.1| adenylate cyclase [Escherichia coli K12]
--- CLUSTER 611 ---
>gi|1573598|gb|AAC22264.1| glycerol-3-phosphate dehydrogenase (NAD+) (gpsA) [Haemophilus influenzae Rd]
>gi|1790037|gb|AAC76632.1| glycerol-3-phosphate dehydrogenase (NAD+) [Escherichia coli K12]
--- CLUSTER 612 --- SPLIT INTO 1717 1718
>gi|1786537|gb|AAC73445.1| thiogalactoside acetyltransferase [Escherichia coli K12]
>gi|1786664|gb|AAC73561.1| putative transferase [Escherichia coli K12]
>gi|1788345|gb|AAC75094.1| putative O-acetyl transferase [Escherichia coli K12]
>gi|1788367|gb|AAC75115.1| putative transferase [Escherichia coli K12]
--- CLUSTER 613 ---
>gi|1786537|gb|AAC73445.1| thiogalactoside acetyltransferase [Escherichia coli K12]
>gi|1788371|gb|AAC75119.1| putative transferase [Escherichia coli K12]
--- CLUSTER 614 --- SPLIT INTO 1719 1720
>gi|1573599|gb|AAC22265.1| serine acetyltransferase (cysE) [Haemophilus influenzae Rd]
>gi|1788371|gb|AAC75119.1| putative transferase [Escherichia coli K12]
>gi|1790035|gb|AAC76631.1| serine acetyltransferase [Escherichia coli K12]
--- CLUSTER 615 ---
>gi|1573602|gb|AAC22268.1| methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase (folD) [Haemophilus influenzae Rd]
>gi|1786741|gb|AAC73631.1| 5,10-methylene-tetrahydrofolate dehydrogenase; 5,10-methylene-tetrahydrofolate cyclohydrolase [Escherichia coli K12]
--- CLUSTER 616 ---
>gi|1573603|gb|AAC22269.1| L-fucose permease (fucP) [Haemophilus influenzae Rd]
>gi|1789166|gb|AAC75843.1| fucose permease [Escherichia coli K12]
--- CLUSTER 617 ---
>gi|1573605|gb|AAC22271.1| fucose operon protein (fucU) [Haemophilus influenzae Rd]
>gi|1789169|gb|AAC75846.1| protein of fucose operon [Escherichia coli K12]
--- CLUSTER 618 ---
>gi|1573607|gb|AAC22273.1| L-fucose isomerase (fucI) [Haemophilus influenzae Rd]
>gi|1789167|gb|AAC75844.1| L-fucose isomerase [Escherichia coli K12]
--- CLUSTER 619 ---
>gi|1573610|gb|AAC22275.1| ATP-dependent helicase (hepA) [Haemophilus influenzae Rd]
>gi|1786245|gb|AAC73170.1| probable ATP-dependent RNA helicase [Escherichia coli K12]
--- CLUSTER 620 ---
>gi|1573612|gb|AAC22277.1| glp protein, putative [Haemophilus influenzae Rd]
>gi|2367225|gb|AAC76449.1| protein of glp regulon [Escherichia coli K12]
--- CLUSTER 621 ---
>gi|1573614|gb|AAC22279.1| 28 kDa outer membrane protein (hlpA) [Haemophilus influenzae Rd]
>gi|1786396|gb|AAC73308.1| putative lipoprotein [Escherichia coli K12]
>gi|1790093|gb|AAC76684.1| lipoprotein-28 [Escherichia coli K12]
--- CLUSTER 622 ---
>gi|1573618|gb|AAC22282.1| polypeptide deformylase (def) [Haemophilus influenzae Rd]
>gi|1789682|gb|AAC76312.1| peptide deformylase [Escherichia coli K12]
--- CLUSTER 623 ---
>gi|1573619|gb|AAC22283.1| methionyl-tRNA formyltransferase (fmt) [Haemophilus influenzae Rd]
>gi|1788589|gb|AAC75315.1| putative transformylase [Escherichia coli K12]
>gi|1789683|gb|AAC76313.1| 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase [Escherichia coli K12]
--- CLUSTER 624 --- SPLIT INTO 1721 1722
>gi|1573620|gb|AAC22284.1| sun protein (sun) [Haemophilus influenzae Rd]
>gi|1788140|gb|AAC74905.1| putative nucleolar proteins [Escherichia coli K12]
>gi|2367212|gb|AAC76314.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 625 ---
>gi|1573621|gb|AAC22285.1| TRK system potassium uptake protein (trkA) [Haemophilus influenzae Rd]
>gi|1789685|gb|AAC76315.1| transport of potassium [Escherichia coli K12]
--- CLUSTER 626 ---
>gi|1573622|gb|AAC22286.1| large conductance mechanosensitive channel (mscL) [Haemophilus influenzae Rd]
>gi|1789686|gb|AAC76316.1| mechanosensitive channel [Escherichia coli K12]
--- CLUSTER 627 ---
>gi|1573623|gb|AAC22287.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789264|gb|AAC75935.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 628 ---
>gi|1573625|gb|AAC22289.1| sigma-E factor negative regulatory protein (mclA) [Haemophilus influenzae Rd]
>gi|1788925|gb|AAC75625.1| sigma-E factor, negative regulatory protein [Escherichia coli K12]
--- CLUSTER 629 ---
>gi|1573627|gb|AAC22290.1| sigma-E factor regulatory protein (rseB) [Haemophilus influenzae Rd]
>gi|1788924|gb|AAC75624.1| regulates activity of sigma-E factor [Escherichia coli K12]
--- CLUSTER 630 ---
>gi|1573628|gb|AAC22291.1| pantothenate kinase (coaA) [Haemophilus influenzae Rd]
>gi|1790409|gb|AAC76952.1| pantothenate kinase [Escherichia coli K12]
--- CLUSTER 631 ---
>gi|1573628|gb|AAC22291.1| pantothenate kinase (coaA) [Haemophilus influenzae Rd]
>gi|1789296|gb|AAC75965.1| putative kinase [Escherichia coli K12]
--- CLUSTER 632 ---
>gi|1573633|gb|AAC22296.1| tryptophanyl-tRNA synthetase (trpS) [Haemophilus influenzae Rd]
>gi|1789786|gb|AAC76409.1| tryptophan tRNA synthetase [Escherichia coli K12]
--- CLUSTER 633 ---
>gi|1573636|gb|AAC22298.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787377|gb|AAC74216.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 634 ---
>gi|1573637|gb|AAC22299.1| adenylosuccinate lyase (purB) [Haemophilus influenzae Rd]
>gi|1787376|gb|AAC74215.1| adenylosuccinate lyase [Escherichia coli K12]
--- CLUSTER 635 ---
>gi|1573638|gb|AAC22300.1| ribosomal protein L10 (rpL10) [Haemophilus influenzae Rd]
>gi|1790417|gb|AAC76959.1| 50S ribosomal subunit protein L10 [Escherichia coli K12]
--- CLUSTER 636 ---
>gi|1573639|gb|AAC22301.1| ribosomal protein L7/L12 (rpL7/L12) [Haemophilus influenzae Rd]
>gi|1790418|gb|AAC76960.1| 50S ribosomal subunit protein L7/L12 [Escherichia coli K12]
--- CLUSTER 637 ---
>gi|1573640|gb|AAC22302.1| UDP-N-acetylglucosamine pyrophosphorylase (glmU) [Haemophilus influenzae Rd]
>gi|1790168|gb|AAC76753.1| N-acetyl glucosamine-1-phosphate uridyltransferase [Escherichia coli K12]
--- CLUSTER 638 ---
>gi|1573643|gb|AAC22305.1| lysophospholipase L2 (pldB) [Haemophilus influenzae Rd]
>gi|2367303|gb|AAC76828.1| lysophospholipase L(2) [Escherichia coli K12]
--- CLUSTER 639 ---
>gi|1573644|gb|AAC22306.1| aspartate-semialdehyde dehydrogenase (asd) [Haemophilus influenzae Rd]
>gi|1789841|gb|AAC76458.1| aspartate-semialdehyde dehydrogenase [Escherichia coli K12]
--- CLUSTER 640 ---
>gi|1573646|gb|AAC22307.1| transport protein, putative [Haemophilus influenzae Rd]
>gi|1789924|gb|AAC76533.1| putative transport ATPase [Escherichia coli K12]
--- CLUSTER 641 ---
>gi|1573647|gb|AAC22308.1| modulator of drug activity B (mdaB) [Haemophilus influenzae Rd]
>gi|1789406|gb|AAC76064.1| modulator of drug activity B [Escherichia coli K12]
--- CLUSTER 642 ---
>gi|1573650|gb|AAC22310.1| lipopolysaccharide core biosynthesis protein (kdtB) [Haemophilus influenzae Rd]
>gi|1790065|gb|AAC76658.1| putative enzyme of lipopolysaccharide synthesis [Escherichia coli K12]
--- CLUSTER 643 ---
>gi|1573651|gb|AAC22311.1| 3-deoxy-d-manno-octulosonic-acid transferase (kdtA) [Haemophilus influenzae Rd]
>gi|1790064|gb|AAC76657.1| 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) [Escherichia coli K12]
--- CLUSTER 644 ---
>gi|1573653|gb|AAC22313.1| DNA-3-methyladenine glycosidase I (tagI) [Haemophilus influenzae Rd]
>gi|1789971|gb|AAC76573.1| 3-methyl-adenine DNA glycosylase I, constitutive [Escherichia coli K12]
--- CLUSTER 645 ---
>gi|1573655|gb|AAC22315.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1574127|gb|AAC22852.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787521|gb|AAC74349.1| orf, hypothetical protein [Escherichia coli K12]
>gi|2367210|gb|AAC76307.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 646 ---
>gi|1573656|gb|AAC22316.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789677|gb|AAC76308.1| putative DNA topoisomerase [Escherichia coli K12]
--- CLUSTER 647 ---
>gi|1573665|gb|AAC22322.1| glpX protein (glpX) [Haemophilus influenzae Rd]
>gi|1789298|gb|AAC75967.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790360|gb|AAC76907.1| unknown function in glycerol metabolism [Escherichia coli K12]
--- CLUSTER 648 ---
>gi|1573669|gb|AAC22328.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790363|gb|AAC76910.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 649 ---
>gi|1573670|gb|AAC22329.1| mioC protein (mioC) [Haemophilus influenzae Rd]
>gi|1789123|gb|AAC75806.1| sulfite reductase (NADPH), flavoprotein beta subunit [Escherichia coli K12]
>gi|1789154|gb|AAC75832.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790181|gb|AAC76765.1| initiation of chromosome replication [Escherichia coli K12]
--- CLUSTER 650 ---
>gi|1573671|gb|AAC22330.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790320|gb|AAD13449.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 651 ---
>gi|1573672|gb|AAC22331.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789103|gb|AAC75788.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 652 ---
>gi|1573673|gb|AAC22332.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789104|gb|AAC75789.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 653 ---
>gi|1573674|gb|AAC22333.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789105|gb|AAC75790.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 654 ---
>gi|1573675|gb|AAC22335.1| aminoacyl-histidine dipeptidase (pepD) [Haemophilus influenzae Rd]
>gi|1786432|gb|AAC73341.1| aminoacyl-histidine dipeptidase (peptidase D) [Escherichia coli K12]
--- CLUSTER 655 ---
>gi|1573678|gb|AAC22337.1| triosephosphate isomerase (tpiA) [Haemophilus influenzae Rd]
>gi|1790353|gb|AAC76901.1| triosephosphate isomerase [Escherichia coli K12]
--- CLUSTER 656 ---
>gi|1573679|gb|AAC22338.1| glpE protein (glpE) [Haemophilus influenzae Rd]
>gi|1789831|gb|AAC76450.1| protein of glp regulon [Escherichia coli K12]
--- CLUSTER 657 ---
>gi|1573684|gb|AAC22342.1| ketol-acid reductoisomerase (ilvC) [Haemophilus influenzae Rd]
>gi|1790210|gb|AAC76779.1| ketol-acid reductoisomerase [Escherichia coli K12]
--- CLUSTER 658 ---
>gi|1573686|gb|AAC22344.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit B (glpB) [Haemophilus influenzae Rd]
>gi|1788575|gb|AAC75302.1| sn-glycerol-3-phosphate dehydrogenase (anaerobic), membrane anchor subunit [Escherichia coli K12]
--- CLUSTER 659 ---
>gi|1788574|gb|AAC75301.1| sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit [Escherichia coli K12]
>gi|1789014|gb|AAC75707.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 660 ---
>gi|1573687|gb|AAC22345.1| anaerobic glycerol-3-phosphate dehydrogenase, subunit A (glpA) [Haemophilus influenzae Rd]
>gi|1788574|gb|AAC75301.1| sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit [Escherichia coli K12]
>gi|2367226|gb|AAC76451.1| sn-glycerol-3-phosphate dehydrogenase (aerobic) [Escherichia coli K12]
--- CLUSTER 661 ---
>gi|1573690|gb|AAC22348.1| glycerophosphoryl diester phosphodiesterase (glpQ) [Haemophilus influenzae Rd]
>gi|1788572|gb|AAC75299.1| glycerophosphodiester phosphodiesterase, periplasmic [Escherichia coli K12]
--- CLUSTER 662 --- SPLIT INTO 1723 1724
>gi|1573698|gb|AAC22355.1| exopolyphosphatase, putative [Haemophilus influenzae Rd]
>gi|1788848|gb|AAC75555.1| exopolyphosphatase [Escherichia coli K12]
>gi|1790213|gb|AAC76784.1| guanosine pentaphosphatase; exopolyphosphatase [Escherichia coli K12]
--- CLUSTER 663 ---
>gi|1573699|gb|AAC22356.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790667|gb|AAC77178.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 664 ---
>gi|1573700|gb|AAC22357.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790666|gb|AAC77177.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 665 ---
>gi|1573702|gb|AAC22358.1| peptidyl-prolyl cis-trans isomerase, FkbP-type (slyD) [Haemophilus influenzae Rd]
>gi|1786211|gb|AAC73139.1| probable FKBX-type 16KD peptidyl-prolyl cis-trans isomerase (a rotamase) [Escherichia coli K12]
>gi|1789748|gb|AAC76374.1| FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) [Escherichia coli K12]
--- CLUSTER 666 ---
>gi|1573703|gb|AAC22359.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790704|gb|AAC77212.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 667 ---
>gi|1573704|gb|AAC22360.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789102|gb|AAC75787.1| putative hydrogenase subunit [Escherichia coli K12]
--- CLUSTER 668 ---
>gi|3212202|gb|AAC22361.1| stationary-phase survival protein (surE) [Haemophilus influenzae Rd]
>gi|1789101|gb|AAC75786.1| survival protein [Escherichia coli K12]
--- CLUSTER 669 ---
>gi|1573708|gb|AAC22364.1| DNA mismatch repair protein (mutS) [Haemophilus influenzae Rd]
>gi|1789089|gb|AAC75775.1| methyl-directed mismatch repair [Escherichia coli K12]
--- CLUSTER 670 ---
>gi|1573709|gb|AAC22365.1| L-seryl-tRNA selenium transferase (selA) [Haemophilus influenzae Rd]
>gi|2367248|gb|AAC76615.1| selenocysteine synthase: L-seryl-tRNA (Ser) selenium transferase [Escherichia coli K12]
--- CLUSTER 671 ---
>gi|1573713|gb|AAC22368.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786419|gb|AAC73329.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 672 ---
>gi|1573715|gb|AAC22370.1| trigger factor (tig) [Haemophilus influenzae Rd]
>gi|1786640|gb|AAC73539.1| trigger factor; a molecular chaperone involved in cell division [Escherichia coli K12]
--- CLUSTER 673 ---
>gi|1573716|gb|AAC22371.1| ATP-dependent Clp protease, proteolytic subunit (clpP) [Haemophilus influenzae Rd]
>gi|1786641|gb|AAC73540.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5 [Escherichia coli K12]
--- CLUSTER 674 ---
>gi|1573718|gb|AAC22373.1| preprotein translocase SecE subunit (secE) [Haemophilus influenzae Rd]
>gi|1790413|gb|AAC76955.1| preprotein translocase [Escherichia coli K12]
--- CLUSTER 675 ---
>gi|1573719|gb|AAC22374.1| transcription antitermination protein (nusG) [Haemophilus influenzae Rd]
>gi|1790414|gb|AAC76956.1| component in transcription antitermination [Escherichia coli K12]
--- CLUSTER 676 ---
>gi|1573720|gb|AAC22375.1| lipoprotein (vacJ) [Haemophilus influenzae Rd]
>gi|1788688|gb|AAC75406.1| lipoprotein precursor [Escherichia coli K12]
--- CLUSTER 677 ---
>gi|1789501|gb|AAC76148.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790696|gb|AAC77205.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 678 ---
>gi|1573721|gb|AAC22376.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787245|gb|AAC74095.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789501|gb|AAC76148.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790691|gb|AAC77200.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 679 ---
>gi|1573723|gb|AAC22378.1| heat shock protein (htpX) [Haemophilus influenzae Rd]
>gi|1788133|gb|AAC74899.1| heat shock protein, integral membrane protein [Escherichia coli K12]
--- CLUSTER 680 ---
>gi|1573724|gb|AAC22379.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789881|gb|AAC76495.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 681 ---
>gi|1573725|gb|AAC22380.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790283|gb|AAC76851.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 682 ---
>gi|3212204|gb|AAC22381.1| TRK system potassium uptake protein (trkH) [Haemophilus influenzae Rd]
>gi|1787626|gb|AAC74445.1| trk system potassium uptake; part of Rac prophage [Escherichia coli K12]
>gi|2367317|gb|AAC76852.1| potassium uptake, requires TrkE [Escherichia coli K12]
--- CLUSTER 683 ---
>gi|1573727|gb|AAC22382.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790297|gb|AAC76863.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 684 ---
>gi|1573731|gb|AAC22385.1| diaminopimelate decarboxylase (lysA) [Haemophilus influenzae Rd]
>gi|1789203|gb|AAC75877.1| diaminopimelate decarboxylase [Escherichia coli K12]
--- CLUSTER 685 ---
>gi|1573739|gb|AAC22386.1| cyaY protein (cyaY) [Haemophilus influenzae Rd]
>gi|1790239|gb|AAC76810.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 686 ---
>gi|1573734|gb|AAC22389.1| organic solvent tolerance protein [Haemophilus influenzae Rd]
>gi|1786239|gb|AAC73165.1| organic solvent tolerance [Escherichia coli K12]
--- CLUSTER 687 --- SPLIT INTO 1725 1726
>gi|1573736|gb|AAC22390.1| sufI protein (sufI) [Haemophilus influenzae Rd]
>gi|1786314|gb|AAC73234.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789394|gb|AAC76053.1| suppressor of ftsI [Escherichia coli K12]
--- CLUSTER 688 ---
>gi|1573735|gb|AAC22392.1| H. influenzae predicted coding region HI0731 [Haemophilus influenzae Rd]
>gi|1789394|gb|AAC76053.1| suppressor of ftsI [Escherichia coli K12]
--- CLUSTER 689 ---
>gi|1573737|gb|AAC22391.1| 1-acyl-glycerol-3-phosphate acyltransferase (plsC) [Haemophilus influenzae Rd]
>gi|1789395|gb|AAC76054.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli K12]
--- CLUSTER 690 ---
>gi|1573741|gb|AAC22394.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786735|gb|AAC73626.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 691 ---
>gi|1573744|gb|AAC22397.1| dihydroxyacid dehydratase (ilvD) [Haemophilus influenzae Rd]
>gi|1786464|gb|AAC73372.1| putative dehydratase [Escherichia coli K12]
>gi|1788157|gb|AAC74921.1| 6-phosphogluconate dehydratase [Escherichia coli K12]
>gi|1790206|gb|AAC77491.1| dihydroxyacid dehydratase [Escherichia coli K12]
>gi|2367371|gb|AAC77253.1| putative dehydratase [Escherichia coli K12]
--- CLUSTER 692 --- SPLIT INTO 1727 1728
>gi|1573745|gb|AAC22398.1| threonine deaminase (ilvA) [Haemophilus influenzae Rd]
>gi|1789505|gb|AAC76152.1| threonine dehydratase, catabolic [Escherichia coli K12]
>gi|1790207|gb|AAC77492.1| threonine deaminase (dehydratase) [Escherichia coli K12]
--- CLUSTER 693 ---
>gi|1574657|gb|AAC22758.1| cysteine synthetase (cysK) [Haemophilus influenzae Rd]
>gi|1788754|gb|AAC75467.1| cysteine synthase A, O-acetylserine sulfhydrolase A [Escherichia coli K12]
>gi|2367138|gb|AAC75474.1| cysteine synthase B, O-acetylserine sulfhydrolase B [Escherichia coli K12]
--- CLUSTER 694 ---
>gi|1573745|gb|AAC22398.1| threonine deaminase (ilvA) [Haemophilus influenzae Rd]
>gi|2367138|gb|AAC75474.1| cysteine synthase B, O-acetylserine sulfhydrolase B [Escherichia coli K12]
--- CLUSTER 695 ---
>gi|1573746|gb|AAC22399.1| DNA polymerase III, alpha subunit (dnaE) [Haemophilus influenzae Rd]
>gi|1786381|gb|AAC73295.1| DNA polymerase III, alpha subunit [Escherichia coli K12]
--- CLUSTER 696 ---
>gi|1573748|gb|AAC22400.1| phosphomannomutase (yhxB) [Haemophilus influenzae Rd]
>gi|1786904|gb|AAC73782.1| phosphoglucomutase [Escherichia coli K12]
--- CLUSTER 697 ---
>gi|1573749|gb|AAC22407.1| H. influenzae predicted coding region HI0742 [Haemophilus influenzae Rd]
>gi|1790656|gb|AAC77168.1| putative oxidoreductase [Escherichia coli K12]
--- CLUSTER 698 ---
>gi|1573750|gb|AAC22401.1| protein-export protein (secB) [Haemophilus influenzae Rd]
>gi|1790038|gb|AAC76633.1| protein export; molecular chaperone; may bind to signel sequence [Escherichia coli K12]
--- CLUSTER 699 ---
>gi|1573751|gb|AAC22402.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790040|gb|AAC76635.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 700 ---
>gi|1573752|gb|AAC22403.1| L-asparaginase II (ansB) [Haemophilus influenzae Rd]
>gi|1788065|gb|AAC74837.1| cytoplasmic L-asparaginase I [Escherichia coli K12]
>gi|1789327|gb|AAC75994.1| periplasmic L-asparaginase II [Escherichia coli K12]
--- CLUSTER 701 ---
>gi|1573753|gb|AAC22404.1| anaerobic C4-dicarboxylate membrane transporter protein (dcuB) [Haemophilus influenzae Rd]
>gi|1790565|gb|AAC77084.1| anaerobic dicarboxylate transport [Escherichia coli K12]
>gi|1790580|gb|AAC77098.1| anaerobic dicarboxylate transport [Escherichia coli K12]
--- CLUSTER 702 ---
>gi|1573755|gb|AAC22406.1| glycerol-3-phosphate acyltransferase (plsB) [Haemophilus influenzae Rd]
>gi|1790474|gb|AAC77011.1| glycerol-3-phosphate acyltransferase [Escherichia coli K12]
--- CLUSTER 703 --- SPLIT INTO 1729 1730
>gi|1573757|gb|AAC22408.1| lexA repressor (lexA) [Haemophilus influenzae Rd]
>gi|1787431|gb|AAC74267.1| SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC [Escherichia coli K12]
>gi|1790476|gb|AAC77013.1| regulator for SOS(lexA) regulon [Escherichia coli K12]
--- CLUSTER 704 ---
>gi|1573758|gb|AAC22409.1| diaminopimelate epimerase (dapF) [Haemophilus influenzae Rd]
>gi|1790242|gb|AAC76812.1| diaminopimelate epimerase [Escherichia coli K12]
--- CLUSTER 705 ---
>gi|1573759|gb|AAC22410.1| thiol peroxidase (tpx) [Haemophilus influenzae Rd]
>gi|1787584|gb|AAC74406.1| thiol peroxidase [Escherichia coli K12]
--- CLUSTER 706 ---
>gi|1573760|gb|AAC22411.1| phosphoribosylformylglycinamidine synthase (purL) [Haemophilus influenzae Rd]
>gi|1788909|gb|AAC75610.1| phosphoribosylformyl-glycineamide synthetase = FGAM synthetase [Escherichia coli K12]
--- CLUSTER 707 ---
>gi|1573761|gb|AAC22412.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787928|gb|AAC74712.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 708 ---
>gi|1573762|gb|AAC22413.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788768|gb|AAC75481.1| putative regulator [Escherichia coli K12]
--- CLUSTER 709 ---
>gi|1573763|gb|AAC22414.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790043|gb|AAC76638.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 710 ---
>gi|1786857|gb|AAC73739.1| homolog of Salmonella cobC, a phosphohistidine protein [Escherichia coli K12]
>gi|1790856|gb|AAC77348.1| phosphoglyceromutase 2 [Escherichia coli K12]
--- CLUSTER 711 ---
>gi|1786857|gb|AAC73739.1| homolog of Salmonella cobC, a phosphohistidine protein [Escherichia coli K12]
>gi|1786970|gb|AAC73842.1| phosphoglyceromutase 1 [Escherichia coli K12]
--- CLUSTER 712 ---
>gi|1573766|gb|AAC22416.1| phosphoglycerate mutase (gpmA) [Haemophilus influenzae Rd]
>gi|1786970|gb|AAC73842.1| phosphoglyceromutase 1 [Escherichia coli K12]
--- CLUSTER 713 ---
>gi|2367109|gb|AAC73399.1| putative ribosomal protein [Escherichia coli K12]
>gi|1790371|gb|AAC76918.1| 50S ribosomal subunit protein L31 [Escherichia coli K12]
--- CLUSTER 714 ---
>gi|1573767|gb|AAC22417.1| ribosomal protein L31 (rpL31) [Haemophilus influenzae Rd]
>gi|1790371|gb|AAC76918.1| 50S ribosomal subunit protein L31 [Escherichia coli K12]
--- CLUSTER 715 ---
>gi|1573769|gb|AAC22419.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789332|gb|AAC75999.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 716 --- SPLIT INTO 1731 1732
>gi|1573770|gb|AAC22420.1| membrane-bound lytic murein transglycosylase C (mltC) [Haemophilus influenzae Rd]
>gi|1787442|gb|AAC74277.1| murein transglycosylase E [Escherichia coli K12]
>gi|2367180|gb|AAC76000.1| membrane-bound lytic murein transglycosylase C [Escherichia coli K12]
--- CLUSTER 717 ---
>gi|1573843|gb|AAC22487.1| soluble lytic murein transglycosylase, putative [Haemophilus influenzae Rd]
>gi|1790853|gb|AAC77345.1| soluble lytic murein transglycosylase [Escherichia coli K12]
--- CLUSTER 718 ---
>gi|1573770|gb|AAC22420.1| membrane-bound lytic murein transglycosylase C (mltC) [Haemophilus influenzae Rd]
>gi|1790853|gb|AAC77345.1| soluble lytic murein transglycosylase [Escherichia coli K12]
--- CLUSTER 719 ---
>gi|1573771|gb|AAC22421.1| transcriptional regulator (nadR) [Haemophilus influenzae Rd]
>gi|1790851|gb|AAC77343.1| probable nadAB transcriptional regulator [Escherichia coli K12]
--- CLUSTER 720 ---
>gi|1573772|gb|AAC22422.1| 3,4-dihydroxy-2-butanone 4-phosphate synthase (ribB) [Haemophilus influenzae Rd]
>gi|1789420|gb|AAC76077.1| 3,4 dihydroxy-2-butanone-4-phosphate synthase [Escherichia coli K12]
--- CLUSTER 721 ---
>gi|1573774|gb|AAC22424.1| rRNA methylase, putative [Haemophilus influenzae Rd]
>gi|1790034|gb|AAC76630.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 722 ---
>gi|1573775|gb|AAC22425.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789875|gb|AAC76490.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 723 ---
>gi|1573778|gb|AAC22428.1| cell division protein (ftsX) [Haemophilus influenzae Rd]
>gi|1789872|gb|AAC76487.1| cell division membrane protein [Escherichia coli K12]
--- CLUSTER 724 ---
>gi|1573781|gb|AAC22430.1| acetyl-CoA acetyltransferase (atoB) [Haemophilus influenzae Rd]
>gi|1787663|gb|AAC74479.1| putative acyltransferase [Escherichia coli K12]
>gi|1788554|gb|AAC75284.1| acetyl-CoA acetyltransferase [Escherichia coli K12]
>gi|1788683|gb|AAC75402.1| putative acyltransferase [Escherichia coli K12]
>gi|1789210|gb|AAC75883.1| putative acyltransferase [Escherichia coli K12]
>gi|2367316|gb|AAC76848.1| thiolase I; 3-ketoacyl-CoA thiolase; acetyl-CoA transferase [Escherichia coli K12]
--- CLUSTER 725 ---
>gi|1573782|gb|AAC22431.1| short-chain fatty acids transporter (atoE) [Haemophilus influenzae Rd]
>gi|1788553|gb|AAC75283.1| short chain fatty acid transporter [Escherichia coli K12]
--- CLUSTER 726 ---
>gi|1573783|gb|AAC22432.1| acetate CoA-transferase, beta subunit (atoA) [Haemophilus influenzae Rd]
>gi|1788552|gb|AAC75282.1| acetyl-CoA:acetoacetyl-CoA transferase beta subunit [Escherichia coli K12]
--- CLUSTER 727 ---
>gi|1573783|gb|AAC22432.1| acetate CoA-transferase, beta subunit (atoA) [Haemophilus influenzae Rd]
>gi|1787985|gb|AAC74764.1| putative enzyme [Escherichia coli K12]
--- CLUSTER 728 ---
>gi|1573784|gb|AAC22433.1| acetate CoA-transferase, alpha subunit [Haemophilus influenzae Rd]
>gi|1788551|gb|AAC75281.1| acetyl-CoA:acetoacetyl-CoA transferase alpha subunit [Escherichia coli K12]
--- CLUSTER 729 ---
>gi|1573786|gb|AAC22435.1| ribosomal protein S10 (rpS10) [Haemophilus influenzae Rd]
>gi|1789717|gb|AAC76346.1| 30S ribosomal subunit protein S10 [Escherichia coli K12]
--- CLUSTER 730 ---
>gi|1573787|gb|AAC22436.1| ribosomal protein L3 (rpL3) [Haemophilus influenzae Rd]
>gi|1789716|gb|AAC76345.1| 50S ribosomal subunit protein L3 [Escherichia coli K12]
--- CLUSTER 731 ---
>gi|1573788|gb|AAC22437.1| ribosomal protein L4 (rpL4) [Haemophilus influenzae Rd]
>gi|1789715|gb|AAC76344.1| 50S ribosomal subunit protein L4, regulates expression of S10 operon [Escherichia coli K12]
--- CLUSTER 732 ---
>gi|1573789|gb|AAC22438.1| ribosomal protein L23 (rpL23) [Haemophilus influenzae Rd]
>gi|1789714|gb|AAC76343.1| 50S ribosomal subunit protein L23 [Escherichia coli K12]
--- CLUSTER 733 ---
>gi|1573790|gb|AAC22439.1| ribosomal protein L2 (rpL2) [Haemophilus influenzae Rd]
>gi|1789713|gb|AAC76342.1| 50S ribosomal subunit protein L2 [Escherichia coli K12]
--- CLUSTER 734 ---
>gi|1573791|gb|AAC22440.1| ribosomal protein S19 (rpS19) [Haemophilus influenzae Rd]
>gi|1789712|gb|AAC76341.1| 30S ribosomal subunit protein S19 [Escherichia coli K12]
--- CLUSTER 735 ---
>gi|1573792|gb|AAC22441.1| ribosomal protein L22 (rpL22) [Haemophilus influenzae Rd]
>gi|1789711|gb|AAC76340.1| 50S ribosomal subunit protein L22 [Escherichia coli K12]
--- CLUSTER 736 ---
>gi|1573793|gb|AAC22442.1| ribosomal protein S3 (rpS3) [Haemophilus influenzae Rd]
>gi|1789710|gb|AAC76339.1| 30S ribosomal subunit protein S3 [Escherichia coli K12]
--- CLUSTER 737 ---
>gi|1573794|gb|AAC22443.1| ribosomal protein L16 (rpL16) [Haemophilus influenzae Rd]
>gi|1789709|gb|AAC76338.1| 50S ribosomal subunit protein L16 [Escherichia coli K12]
--- CLUSTER 738 ---
>gi|1573795|gb|AAC22444.1| ribosomal protein L29 (rpL29) [Haemophilus influenzae Rd]
>gi|1789708|gb|AAC76337.1| 50S ribosomal subunit protein L29 [Escherichia coli K12]
--- CLUSTER 739 ---
>gi|1573796|gb|AAC22445.1| ribosomal protein S17 (rpS17) [Haemophilus influenzae Rd]
>gi|1789707|gb|AAC76336.1| 30S ribosomal subunit protein S17 [Escherichia coli K12]
--- CLUSTER 740 ---
>gi|1573798|gb|AAC22446.1| ribosomal protein L14 (rpL14) [Haemophilus influenzae Rd]
>gi|1789706|gb|AAC76335.1| 50S ribosomal subunit protein L14 [Escherichia coli K12]
--- CLUSTER 741 ---
>gi|1573799|gb|AAC22447.1| ribosomal protein L24 (rpL24) [Haemophilus influenzae Rd]
>gi|1789705|gb|AAC76334.1| 50S ribosomal subunit protein L24 [Escherichia coli K12]
--- CLUSTER 742 ---
>gi|1573800|gb|AAC22448.1| ribosomal protein L5 (rpL5) [Haemophilus influenzae Rd]
>gi|1789704|gb|AAC76333.1| 50S ribosomal subunit protein L5 [Escherichia coli K12]
--- CLUSTER 743 ---
>gi|1573801|gb|AAC22449.1| ribosomal protein S14 (rpS14) [Haemophilus influenzae Rd]
>gi|1789703|gb|AAC76332.1| 30S ribosomal subunit protein S14 [Escherichia coli K12]
--- CLUSTER 744 ---
>gi|1573802|gb|AAC22450.1| ribosomal protein S8 (rpS8) [Haemophilus influenzae Rd]
>gi|1789702|gb|AAC76331.1| 30S ribosomal subunit protein S8, and regulator [Escherichia coli K12]
--- CLUSTER 745 ---
>gi|1573803|gb|AAC22451.1| ribosomal protein L6 (rpL6) [Haemophilus influenzae Rd]
>gi|1789701|gb|AAC76330.1| 50S ribosomal subunit protein L6 [Escherichia coli K12]
--- CLUSTER 746 ---
>gi|1573804|gb|AAC22452.1| ribosomal protein L18 (rpL18) [Haemophilus influenzae Rd]
>gi|1789700|gb|AAC76329.1| 50S ribosomal subunit protein L18 [Escherichia coli K12]
--- CLUSTER 747 ---
>gi|1573805|gb|AAC22453.1| ribosomal protein S5 (rpS5) [Haemophilus influenzae Rd]
>gi|1789699|gb|AAC76328.1| 30S ribosomal subunit protein S5 [Escherichia coli K12]
--- CLUSTER 748 ---
>gi|1573806|gb|AAC22454.1| ribosomal protein L30 (rpL30) [Haemophilus influenzae Rd]
>gi|1789698|gb|AAC76327.1| 50S ribosomal subunit protein L30 [Escherichia coli K12]
--- CLUSTER 749 ---
>gi|1573807|gb|AAC22455.1| ribosomal protein L15 (rpL15) [Haemophilus influenzae Rd]
>gi|1789697|gb|AAC76326.1| 50S ribosomal subunit protein L15 [Escherichia coli K12]
--- CLUSTER 750 ---
>gi|1573808|gb|AAC22456.1| preprotein translocase SecY subunit (secY) [Haemophilus influenzae Rd]
>gi|1789696|gb|AAC76325.1| putative ATPase subunit of translocase [Escherichia coli K12]
--- CLUSTER 751 ---
>gi|1573809|gb|AAC22457.1| ribosomal protein L36 (rpL36) [Haemophilus influenzae Rd]
>gi|1789695|gb|AAC76324.1| 50S ribosomal subunit protein L36 [Escherichia coli K12]
--- CLUSTER 752 ---
>gi|1573810|gb|AAC22458.1| ribosomal protein S13 (rpS13) [Haemophilus influenzae Rd]
>gi|1789693|gb|AAC76323.1| 30S ribosomal subunit protein S13 [Escherichia coli K12]
--- CLUSTER 753 ---
>gi|1573811|gb|AAC22459.1| ribosomal protein S11 (rpS11) [Haemophilus influenzae Rd]
>gi|1789692|gb|AAC76322.1| 30S ribosomal subunit protein S11 [Escherichia coli K12]
--- CLUSTER 754 ---
>gi|1573812|gb|AAC22460.1| ribosomal protein S4 (rpS4) [Haemophilus influenzae Rd]
>gi|1789691|gb|AAC76321.1| 30S ribosomal subunit protein S4 [Escherichia coli K12]
--- CLUSTER 755 ---
>gi|1573813|gb|AAC22461.1| DNA-directed RNA polymerase, alpha chain (rpoA) [Haemophilus influenzae Rd]
>gi|1789690|gb|AAC76320.1| RNA polymerase, alpha subunit [Escherichia coli K12]
--- CLUSTER 756 ---
>gi|1573814|gb|AAC22462.1| ribosomal protein L17 (rplQ) [Haemophilus influenzae Rd]
>gi|1789689|gb|AAC76319.1| 50S ribosomal subunit protein L17 [Escherichia coli K12]
--- CLUSTER 757 ---
>gi|1573819|gb|AAC22466.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786369|gb|AAC73284.1| putative ATP-binding component of a transport system [Escherichia coli K12]
--- CLUSTER 758 ---
>gi|1573820|gb|AAC22467.1| ribosome releasing factor (rrf) [Haemophilus influenzae Rd]
>gi|1786368|gb|AAC73283.1| ribosome releasing factor [Escherichia coli K12]
--- CLUSTER 759 ---
>gi|1573821|gb|AAC22468.1| phosphoenolpyruvate carboxykinase (pckA) [Haemophilus influenzae Rd]
>gi|1789807|gb|AAC76428.1| phosphoenolpyruvate carboxykinase [Escherichia coli K12]
--- CLUSTER 760 ---
>gi|1573822|gb|AAC22469.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789804|gb|AAC76426.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 761 ---
>gi|1573824|gb|AAC22471.1| glucosephosphate uridylyltransferase (galU) [Haemophilus influenzae Rd]
>gi|1787488|gb|AAC74318.1| glucose-1-phosphate uridylyltransferase [Escherichia coli K12]
>gi|1788355|gb|AAC75103.1| homolog of Salmonella UTP--glucose-1-P uridyltransferase, probably a UDP-gal transferase [Escherichia coli K12]
--- CLUSTER 762 ---
>gi|1573825|gb|AAC22472.1| carbon storage regulator (csrA) [Haemophilus influenzae Rd]
>gi|1789047|gb|AAC75738.1| carbon storage regulator; controls glycogen synthesis, gluconeogenesis, cell size and surface properties [Escherichia coli K12]
--- CLUSTER 763 ---
>gi|1573826|gb|AAC22473.1| alanyl-tRNA synthetase (alaS) [Haemophilus influenzae Rd]
>gi|1789048|gb|AAC75739.1| alanyl-tRNA synthetase [Escherichia coli K12]
--- CLUSTER 764 ---
>gi|1573828|gb|AAC22474.1| universal stress protein A (uspA) [Haemophilus influenzae Rd]
>gi|1788205|gb|AAC74965.1| putative regulator [Escherichia coli K12]
>gi|1789909|gb|AAC76520.1| universal stress protein; broad regulatory function? [Escherichia coli K12]
>gi|1790358|gb|AAC76905.1| putative regulator [Escherichia coli K12]
--- CLUSTER 765 ---
>gi|1574578|gb|AAC23368.1| methionine aminopeptidase (map) [Haemophilus influenzae Rd]
>gi|1786364|gb|AAC73279.1| methionine aminopeptidase [Escherichia coli K12]
>gi|1788728|gb|AAC75444.1| putative peptidase [Escherichia coli K12]
--- CLUSTER 766 ---
>gi|1788728|gb|AAC75444.1| putative peptidase [Escherichia coli K12]
>gi|1789275|gb|AAC75946.1| proline aminopeptidase P II [Escherichia coli K12]
--- CLUSTER 767 --- SPLIT INTO 1733 1734
>gi|1573829|gb|AAC22475.1| aminopeptidase P (pepP) [Haemophilus influenzae Rd]
>gi|1789275|gb|AAC75946.1| proline aminopeptidase P II [Escherichia coli K12]
>gi|1790282|gb|AAC76850.1| proline dipeptidase [Escherichia coli K12]
--- CLUSTER 768 ---
>gi|1573830|gb|AAC22476.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789276|gb|AAC75947.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 769 ---
>gi|1573831|gb|AAC22477.1| aldose 1-epimerase (galM) [Haemophilus influenzae Rd]
>gi|1786971|gb|AAC73843.1| galactose-1-epimerase (mutarotase) [Escherichia coli K12]
--- CLUSTER 770 ---
>gi|1573832|gb|AAC22478.1| galactokinase (galK) [Haemophilus influenzae Rd]
>gi|1786972|gb|AAC73844.1| galactokinase [Escherichia coli K12]
--- CLUSTER 771 ---
>gi|1573833|gb|AAC22479.1| galactose-1-phosphate uridylyltransferase (galT) [Haemophilus influenzae Rd]
>gi|1786973|gb|AAC73845.1| galactose-1-phosphate uridylyltransferase [Escherichia coli K12]
--- CLUSTER 772 ---
>gi|1573840|gb|AAC22484.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1787507|gb|AAC74336.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 773 ---
>gi|1573841|gb|AAC22485.1| conserved hypothetical [Haemophilus influenzae Rd]
>gi|1787506|gb|AAC74335.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 774 ---
>gi|1573842|gb|AAC22486.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787504|gb|AAC74333.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 775 ---
>gi|1573844|gb|AAC22488.1| trp operon repressor (trpR) [Haemophilus influenzae Rd]
>gi|1790854|gb|AAC77346.1| regulator for trp operon and aroH; trp aporepressor [Escherichia coli K12]
--- CLUSTER 776 ---
>gi|1573846|gb|AAC22490.1| fumarate reductase, 13 kDa hydrophobic protein (frdD) [Haemophilus influenzae Rd]
>gi|1790594|gb|AAC77111.1| fumarate reductase, anaerobic, membrane anchor polypeptide [Escherichia coli K12]
--- CLUSTER 777 ---
>gi|1573847|gb|AAC22491.1| fumarate reductase, 15 kDa hydrophobic protein (frdC) [Haemophilus influenzae Rd]
>gi|1790595|gb|AAC77112.1| fumarate reductase, anaerobic, membrane anchor polypeptide [Escherichia coli K12]
--- CLUSTER 778 ---
>gi|1573848|gb|AAC22492.1| fumarate reductase, iron-sulfur protein (frdB) [Haemophilus influenzae Rd]
>gi|1786943|gb|AAC73818.1| succinate dehydrogenase, iron sulfur protein [Escherichia coli K12]
>gi|1790596|gb|AAC77113.1| fumarate reductase, anaerobic, iron-sulfur protein subunit [Escherichia coli K12]
--- CLUSTER 779 ---
>gi|1573849|gb|AAC22493.1| fumarate reductase, flavoprotein subunit (frdA) [Haemophilus influenzae Rd]
>gi|1786942|gb|AAC73817.1| succinate dehydrogenase, flavoprotein subunit [Escherichia coli K12]
>gi|1788928|gb|AAC75627.1| quinolinate synthetase, B protein [Escherichia coli K12]
>gi|1790597|gb|AAC77114.1| fumarate reductase, anaerobic, flavoprotein subunit [Escherichia coli K12]
--- CLUSTER 780 ---
>gi|1573853|gb|AAC22497.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788513|gb|AAC75247.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 781 ---
>gi|1573855|gb|AAC22499.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788514|gb|AAC75248.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 782 ---
>gi|1573856|gb|AAC22500.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788515|gb|AAC75249.1| putative sulfatase [Escherichia coli K12]
--- CLUSTER 783 ---
>gi|1786517|gb|AAC73427.1| putative deaminase [Escherichia coli K12]
>gi|1786531|gb|AAC73440.1| cytosine deaminase [Escherichia coli K12]
--- CLUSTER 784 ---
>gi|1573857|gb|AAC22510.1| H. influenzae predicted coding region HI0842 [Haemophilus influenzae Rd]
>gi|1786531|gb|AAC73440.1| cytosine deaminase [Escherichia coli K12]
--- CLUSTER 785 ---
>gi|1573858|gb|AAC22501.1| molybdopterin-guanine dinucleotide biosynthesis protein (mob) [Haemophilus influenzae Rd]
>gi|1790288|gb|AAC76855.1| molybdopterin ---> molybdopterin-guanine dinucleotide, protein Ar [Escherichia coli K12]
--- CLUSTER 786 ---
>gi|1573859|gb|AAC22502.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790289|gb|AAC76856.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 787 ---
>gi|1573860|gb|AAC22503.1| periplasmic oxidoreductase (por) [Haemophilus influenzae Rd]
>gi|1790291|gb|AAC76858.1| protein disulfide isomerase I, essential for cytochrome c synthesis and formate-dependent reduction [Escherichia coli K12]
--- CLUSTER 788 ---
>gi|1573861|gb|AAC22504.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|2367277|gb|AAC77485.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 789 ---
>gi|1573863|gb|AAC22506.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789912|gb|AAC76522.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 790 ---
>gi|1573865|gb|AAC22508.1| molybdopterin-guanine dinucleotide biosynthesis protein B (mobB) [Haemophilus influenzae Rd]
>gi|1790287|gb|AAC76854.1| molybdopterin-guanine dinucleotide biosynthesis protein B [Escherichia coli K12]
--- CLUSTER 791 ---
>gi|1573870|gb|AAC22514.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789496|gb|AAC76144.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 792 --- SPLIT INTO 1735 1736
>gi|1573871|gb|AAC22515.1| DNA polymerase I (polA) [Haemophilus influenzae Rd]
>gi|1789162|gb|AAC75840.1| 5'-3' exonuclease [Escherichia coli K12]
>gi|1790294|gb|AAC76861.1| DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5' exonuclease [Escherichia coli K12]
--- CLUSTER 793 ---
>gi|1573872|gb|AAC22516.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789277|gb|AAC75948.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 794 ---
>gi|1573873|gb|AAC22517.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789278|gb|AAC75949.1| putative ligase [Escherichia coli K12]
--- CLUSTER 795 ---
>gi|1573874|gb|AAC22518.1| ATP-dependent Clp protease, ATPase subunit (clpB) [Haemophilus influenzae Rd]
>gi|1787109|gb|AAC73969.1| ATP-binding component of serine protease [Escherichia coli K12]
>gi|1788943|gb|AAC75641.1| heat shock protein [Escherichia coli K12]
--- CLUSTER 796 ---
>gi|1573879|gb|AAC22521.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789882|gb|AAC76496.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 797 ---
>gi|1573880|gb|AAC22522.1| pyridoxamine phosphate oxidase (pdxH) [Haemophilus influenzae Rd]
>gi|1787926|gb|AAC74710.1| pyridoxinephosphate oxidase [Escherichia coli K12]
--- CLUSTER 798 ---
>gi|1573882|gb|AAC22524.1| glutamine synthetase (glnA) [Haemophilus influenzae Rd]
>gi|1787555|gb|AAC74379.1| putative glutamine synthetase (EC 6.3.1.2) [Escherichia coli K12]
>gi|1790301|gb|AAC76867.1| glutamine synthetase [Escherichia coli K12]
--- CLUSTER 799 --- SPLIT INTO 1737 1738
>gi|3212205|gb|AAC22527.1| H. influenzae predicted coding region HI0866 [Haemophilus influenzae Rd]
>gi|1786802|gb|AAC73688.1| ferric enterobactin (enterochelin) transport [Escherichia coli K12]
>gi|1788339|gb|AAC75088.1| regulator of length of O-antigen component of lipopolysaccharide chains [Escherichia coli K12]
>gi|2367281|gb|AAC76790.1| putative transport protein [Escherichia coli K12]
--- CLUSTER 800 ---
>gi|1573890|gb|AAC22530.1| undecaprenyl-phosphate galactosephosphotransferase (rfbP) [Haemophilus influenzae Rd]
>gi|1788360|gb|AAC75108.1| putative colanic acid biosynthsis UDP-glucose lipid carrier transferase [Escherichia coli K12]
--- CLUSTER 801 ---
>gi|1573892|gb|AAC22538.1| H. influenzae predicted coding region HI0874 [Haemophilus influenzae Rd]
>gi|1790052|gb|AAC76646.1| O-antigen ligase; lipopolysaccharide core biosynthesis [Escherichia coli K12]
--- CLUSTER 802 ---
>gi|1573893|gb|AAC22532.1| nucleoside diphosphate kinase (ndk) [Haemophilus influenzae Rd]
>gi|1788866|gb|AAC75571.1| nucleoside diphosphate kinase [Escherichia coli K12]
--- CLUSTER 803 --- SPLIT INTO 1739 1740
>gi|1573894|gb|AAC22533.1| GTP-binding protein (yhbZ) [Haemophilus influenzae Rd]
>gi|1789574|gb|AAC76215.1| putative GTP-binding factor [Escherichia coli K12]
>gi|1790615|gb|AAC77130.1| GTP - binding subunit of protease specific for phage lambda cII repressor [Escherichia coli K12]
--- CLUSTER 804 ---
>gi|1573895|gb|AAC22534.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789575|gb|AAC76216.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 805 ---
>gi|1573896|gb|AAC22535.1| ribosomal protein L27 (rpL27) [Haemophilus influenzae Rd]
>gi|1789576|gb|AAC76217.1| 50S ribosomal subunit protein L27 [Escherichia coli K12]
--- CLUSTER 806 ---
>gi|1573897|gb|AAC22536.1| ribosomal protein L21 (rpL21) [Haemophilus influenzae Rd]
>gi|1789577|gb|AAC76218.1| 50S ribosomal subunit protein L21 [Escherichia coli K12]
--- CLUSTER 807 ---
>gi|1573904|gb|AAC22544.1| phosphoribosylaminoimidazolecarboxamide formyltransferase (purH) [Haemophilus influenzae Rd]
>gi|1790439|gb|AAC76980.1| phosphoribosylaminoimidazolecarboxamideformyltransferase = AICAR formyltransferase; IMP cyclohydrolase [Escherichia coli K12]
--- CLUSTER 808 ---
>gi|1573905|gb|AAC22545.1| phosphoribosylamine--glycine ligase (purD) [Haemophilus influenzae Rd]
>gi|1790438|gb|AAC76979.1| phosphoribosylglycinamide synthetase = GAR synthetase [Escherichia coli K12]
--- CLUSTER 809 ---
>gi|1573908|gb|AAC22549.1| serine hydroxymethyltransferase (serine methylase) (glyA) [Haemophilus influenzae Rd]
>gi|1788902|gb|AAC75604.1| serine hydroxymethyltransferase [Escherichia coli K12]
--- CLUSTER 810 ---
>gi|1573909|gb|AAC22550.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786292|gb|AAC73214.1| putative DNA repair protein [Escherichia coli K12]
--- CLUSTER 811 ---
>gi|1573910|gb|AAC22551.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786290|gb|AAC73212.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 812 ---
>gi|1573914|gb|AAC22555.1| acriflavine resistance protein (acrB) [Haemophilus influenzae Rd]
>gi|1786667|gb|AAC73564.1| acridine efflux pump [Escherichia coli K12]
>gi|1786788|gb|AAC73676.1| putative inner membrane component for iron transport [Escherichia coli K12]
>gi|1788390|gb|AAC75136.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788391|gb|AAC75137.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788814|gb|AAC75523.1| sensitivity to acriflavine, integral membrane protein, possible efflux pump [Escherichia coli K12]
>gi|1789666|gb|AAC76298.1| integral transmembrane protein; acridine resistance [Escherichia coli K12]
>gi|1789930|gb|AAC76539.1| putative transport system permease protein [Escherichia coli K12]
--- CLUSTER 813 ---
>gi|1573915|gb|AAC22556.1| cell division protein (ftsN) [Haemophilus influenzae Rd]
>gi|1790368|gb|AAC76915.1| essential cell division protein [Escherichia coli K12]
--- CLUSTER 814 --- SPLIT INTO 1741 1742 1743 1744 1745 1746 1747 1748
>gi|1573917|gb|AAC22558.1| multidrug resistance protein A (emrA) [Haemophilus influenzae Rd]
>gi|1786668|gb|AAC73565.1| acridine efflux pump [Escherichia coli K12]
>gi|1787013|gb|AAC73882.1| putative membrane protein [Escherichia coli K12]
>gi|1787104|gb|AAC73965.1| putative membrane protein [Escherichia coli K12]
>gi|1787932|gb|AAC74716.1| putative membrane protein [Escherichia coli K12]
>gi|1788389|gb|AAC75135.1| putative membrane protein [Escherichia coli K12]
>gi|1788711|gb|AAC75427.1| multidrug resistance protein K [Escherichia coli K12]
>gi|1789041|gb|AAC75732.1| multidrug resistance secretion protein [Escherichia coli K12]
>gi|1789637|gb|AAC76273.1| putative membrane protein [Escherichia coli K12]
>gi|1789665|gb|AAC76297.1| transmembrane protein affects septum formation and cell membrane permeability [Escherichia coli K12]
>gi|1789900|gb|AAC76512.1| putative membrane protein [Escherichia coli K12]
>gi|1789929|gb|AAC76538.1| putative membrane protein [Escherichia coli K12]
>gi|1790012|gb|AAC76610.1| putative membrane protein [Escherichia coli K12]
>gi|1790024|gb|AAC76621.1| putative membrane protein [Escherichia coli K12]
>gi|1790519|gb|AAD13465.1| putative membrane protein [Escherichia coli K12]
--- CLUSTER 815 ---
>gi|1573919|gb|AAC22559.1| dihydrofolate reductase (folA) [Haemophilus influenzae Rd]
>gi|1786233|gb|AAC73159.1| dihydrofolate reductase type I; trimethoprim resistance [Escherichia coli K12]
--- CLUSTER 816 ---
>gi|1573920|gb|AAC22560.1| glutamate 5-kinase (gamma-glutamyl kinase) (proB) [Haemophilus influenzae Rd]
>gi|1786437|gb|AAC73346.1| gamma-glutamate kinase [Escherichia coli K12]
--- CLUSTER 817 ---
>gi|1573921|gb|AAC22561.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789194|gb|AAC75869.1| putative invasion protein [Escherichia coli K12]
--- CLUSTER 818 ---
>gi|1573923|gb|AAC22563.1| prolipoprotein diacylglyceryl transferase (lgt) [Haemophilus influenzae Rd]
>gi|1789192|gb|AAC75867.1| phosphatidylglycerol-prolipoprotein diacylglyceryl transferase; a major membrane phospholipid [Escherichia coli K12]
--- CLUSTER 819 ---
>gi|1573924|gb|AAC22564.1| thymidylate synthetase (thyA) [Haemophilus influenzae Rd]
>gi|1789191|gb|AAC75866.1| thymidylate synthetase [Escherichia coli K12]
--- CLUSTER 820 ---
>gi|1573964|gb|AAC22598.1| riboflavin biosynthesis protein (ribD) [Haemophilus influenzae Rd]
>gi|1786616|gb|AAC73517.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Escherichia coli K12]
--- CLUSTER 821 ---
>gi|1786616|gb|AAC73517.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Escherichia coli K12]
>gi|1788911|gb|AAC75612.1| putative deaminase [Escherichia coli K12]
--- CLUSTER 822 ---
>gi|1573925|gb|AAC22565.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788911|gb|AAC75612.1| putative deaminase [Escherichia coli K12]
--- CLUSTER 823 ---
>gi|1573926|gb|AAC22566.1| preprotein translocase SecA subunit (secA) [Haemophilus influenzae Rd]
>gi|1786287|gb|AAC73209.1| preprotein translocase; secretion protein [Escherichia coli K12]
--- CLUSTER 824 ---
>gi|1573927|gb|AAC22567.1| mutator mutT protein (mutT) [Haemophilus influenzae Rd]
>gi|1786288|gb|AAC73210.1| 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP, causes AT-GC transversions [Escherichia coli K12]
>gi|1788056|gb|AAC74829.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 825 ---
>gi|1573928|gb|AAC22568.1| glutathione-regulated potassium efflux system protein (kefC) [Haemophilus influenzae Rd]
>gi|1786232|gb|AAC73158.1| K+ efflux antiporter, glutathione-regulated [Escherichia coli K12]
>gi|1786685|gb|AAC73580.1| putative transport protein [Escherichia coli K12]
>gi|1789749|gb|AAC76375.1| K+ efflux; NEM-activable K+/H+ antiporter [Escherichia coli K12]
--- CLUSTER 826 ---
>gi|1573934|gb|AAC22571.1| ribosomal protein S2 (rpS2) [Haemophilus influenzae Rd]
>gi|1786365|gb|AAC73280.1| 30S ribosomal subunit protein S2 [Escherichia coli K12]
--- CLUSTER 827 ---
>gi|1573935|gb|AAC22572.1| elongation factor Ts (tsf) [Haemophilus influenzae Rd]
>gi|1786366|gb|AAC73281.1| protein chain elongation factor EF-Ts [Escherichia coli K12]
--- CLUSTER 828 ---
>gi|1573937|gb|AAC22574.1| outer membrane protein, putative [Haemophilus influenzae Rd]
>gi|1786375|gb|AAC73289.1| histone-like protein, located in outer membrane or nucleoid [Escherichia coli K12]
--- CLUSTER 829 ---
>gi|1573938|gb|AAC22575.1| protective surface antigen D15 [Haemophilus influenzae Rd]
>gi|1786374|gb|AAC73288.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 830 ---
>gi|1573939|gb|AAC22576.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1786373|gb|AAC73287.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 831 ---
>gi|1573940|gb|AAC22577.1| CDP-diglyceride synthetase (cdsA) [Haemophilus influenzae Rd]
>gi|1786372|gb|AAC73286.1| CDP-diglyceride synthetase [Escherichia coli K12]
>gi|1787677|gb|AAC74491.1| putative phosphatidate cytidiltransferase [Escherichia coli K12]
--- CLUSTER 832 ---
>gi|1573941|gb|AAC22578.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786371|gb|AAC73285.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 833 ---
>gi|1574225|gb|AAC23038.1| valyl-tRNA synthetase (valS) [Haemophilus influenzae Rd]
>gi|1790708|gb|AAC77215.1| valine tRNA synthetase [Escherichia coli K12]
--- CLUSTER 834 --- SPLIT INTO 1749 1750
>gi|1574731|gb|AAC22924.1| methionyl-tRNA synthetase (metG) [Haemophilus influenzae Rd]
>gi|1788432|gb|AAC75175.1| methionine tRNA synthetase [Escherichia coli K12]
>gi|1789455|gb|AAC76109.1| putative tRNA synthetase [Escherichia coli K12]
--- CLUSTER 835 --- SPLIT INTO 1751 1752
>gi|1573943|gb|AAC22581.1| leucyl-tRNA synthetase (leuS) [Haemophilus influenzae Rd]
>gi|1786861|gb|AAC73743.1| leucine tRNA synthetase [Escherichia coli K12]
>gi|1788432|gb|AAC75175.1| methionine tRNA synthetase [Escherichia coli K12]
>gi|1790708|gb|AAC77215.1| valine tRNA synthetase [Escherichia coli K12]
--- CLUSTER 836 ---
>gi|1573944|gb|AAC22582.1| rare lipoprotein B, putative [Haemophilus influenzae Rd]
>gi|1786860|gb|AAC73742.1| a minor lipoprotein [Escherichia coli K12]
--- CLUSTER 837 ---
>gi|1573945|gb|AAC22583.1| DNA polymerase III, delta subunit (holA) [Haemophilus influenzae Rd]
>gi|1786859|gb|AAC73741.1| DNA polymerase III, delta subunit [Escherichia coli K12]
--- CLUSTER 838 ---
>gi|1573946|gb|AAC22584.1| glycyl-tRNA synthetase, beta chain (glyS) [Haemophilus influenzae Rd]
>gi|1789982|gb|AAC76583.1| glycine tRNA synthetase, beta subunit [Escherichia coli K12]
--- CLUSTER 839 ---
>gi|1573948|gb|AAC22586.1| glycyl-tRNA synthetase, alpha chain (glyQ) [Haemophilus influenzae Rd]
>gi|1789983|gb|AAC76584.1| glycine tRNA synthetase, alpha subunit [Escherichia coli K12]
--- CLUSTER 840 ---
>gi|1573949|gb|AAC22587.1| catalase (hktE) [Haemophilus influenzae Rd]
>gi|1788027|gb|AAC74802.1| catalase; hydroperoxidase HPII(III) [Escherichia coli K12]
--- CLUSTER 841 ---
>gi|1573952|gb|AAC22589.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789361|gb|AAC76024.1| glutathionylspermidine synthetase/amidase [Escherichia coli K12]
>gi|1789416|gb|AAC76074.1| putative synthetase/amidase [Escherichia coli K12]
>gi|1790629|gb|AAC77143.1| putative synthetase/amidase [Escherichia coli K12]
--- CLUSTER 842 ---
>gi|1573953|gb|AAC22590.1| enolase (eno) [Haemophilus influenzae Rd]
>gi|1789141|gb|AAC75821.1| enolase [Escherichia coli K12]
--- CLUSTER 843 ---
>gi|1573954|gb|AAC22591.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|2367234|gb|AAC76517.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 844 ---
>gi|1573955|gb|AAC22592.1| cytochrome C-type biogenesis protein (nrfF) [Haemophilus influenzae Rd]
>gi|1788522|gb|AAC75254.1| possible subunit of heme lyase [Escherichia coli K12]
>gi|1790512|gb|AAD13458.1| part of formate-dependent nitrite reductase complex [Escherichia coli K12]
--- CLUSTER 845 ---
>gi|1573955|gb|AAC22592.1| cytochrome C-type biogenesis protein (nrfF) [Haemophilus influenzae Rd]
>gi|1790513|gb|AAD13459.1| part of formate-dependent nitrite reductase complex [Escherichia coli K12]
--- CLUSTER 846 ---
>gi|1573962|gb|AAC22596.1| exodeoxyribonuclease V, gamma chain (recC) [Haemophilus influenzae Rd]
>gi|1789186|gb|AAC75861.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Escherichia coli K12]
--- CLUSTER 847 ---
>gi|1573963|gb|AAC22597.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786615|gb|AAC73516.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 848 ---
>gi|1573970|gb|AAC22606.1| formamidopyrimidine-DNA glycosylase (fpg) [Haemophilus influenzae Rd]
>gi|1786932|gb|AAC73808.1| endonuclease VIII and DNA N-glycosylase with an AP lyase activity [Escherichia coli K12]
>gi|1790066|gb|AAC76659.1| formamidopyrimidine DNA glycosylase [Escherichia coli K12]
--- CLUSTER 849 ---
>gi|1573975|gb|AAC22611.1| ribosomal protein L33 (rpL33) [Haemophilus influenzae Rd]
>gi|1790067|gb|AAC76660.1| 50S ribosomal subunit protein L33 [Escherichia coli K12]
--- CLUSTER 850 ---
>gi|1573976|gb|AAC22612.1| ribosomal protein L28 (rpL28) [Haemophilus influenzae Rd]
>gi|1790068|gb|AAC76661.1| 50S ribosomal subunit protein L28 [Escherichia coli K12]
--- CLUSTER 851 --- SPLIT INTO 1753 1754
>gi|1573977|gb|AAC22613.1| DNA repair protein (radC) [Haemophilus influenzae Rd]
>gi|2367100|gb|AAC73350.1| putative DNA repair protein [Escherichia coli K12]
>gi|1788312|gb|AAC75063.1| putative DNA repair protein, RADC family [Escherichia coli K12]
>gi|1788997|gb|AAC75692.1| putative DNA repair protein [Escherichia coli K12]
>gi|1790069|gb|AAC76662.1| DNA repair protein [Escherichia coli K12]
--- CLUSTER 852 ---
>gi|1573978|gb|AAC22614.1| DNA/pantothenate metabolism flavoprotein (dfp) [Haemophilus influenzae Rd]
>gi|1790070|gb|AAC76663.1| flavoprotein affecting synthesis of DNA and pantothenate metabolism [Escherichia coli K12]
--- CLUSTER 853 ---
>gi|1573979|gb|AAC22615.1| deoxyuridinetriphosphatase (dut) [Haemophilus influenzae Rd]
>gi|1790071|gb|AAC76664.1| deoxyuridinetriphosphatase [Escherichia coli K12]
--- CLUSTER 854 ---
>gi|1573980|gb|AAC22616.1| transcriptional regulator (ttk) [Haemophilus influenzae Rd]
>gi|1790072|gb|AAC76665.1| putative transcriptional regulator [Escherichia coli K12]
--- CLUSTER 855 ---
>gi|1573981|gb|AAC22617.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789753|gb|AAC76379.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 856 ---
>gi|1573985|gb|AAC22620.1| beta-hexosaminidase (exoII) [Haemophilus influenzae Rd]
>gi|1787350|gb|AAC74191.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 857 ---
>gi|1573986|gb|AAC22621.1| hit-related protein [Haemophilus influenzae Rd]
>gi|1787346|gb|AAC74187.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 858 ---
>gi|1573988|gb|AAC22622.1| riboflavin kinase / FMN adenylyltransferase (ribF) [Haemophilus influenzae Rd]
>gi|1786208|gb|AAC73136.1| putative regulator [Escherichia coli K12]
--- CLUSTER 859 ---
>gi|1573989|gb|AAC22623.1| virulence factor (mviN) [Haemophilus influenzae Rd]
>gi|1787309|gb|AAC74153.1| putative virulence factor [Escherichia coli K12]
--- CLUSTER 860 ---
>gi|3212207|gb|AAC22624.1| ribosomal protein S20 (rpS20) [Haemophilus influenzae Rd]
>gi|1786206|gb|AAC73134.1| 30S ribosomal subunit protein S20 [Escherichia coli K12]
--- CLUSTER 861 --- SPLIT INTO 1755 1756 1757 1758 1759
>gi|1573991|gb|AAC22625.1| naphthoate synthase (menB) [Haemophilus influenzae Rd]
>gi|1786220|gb|AAC73147.1| carnitine racemase [Escherichia coli K12]
>gi|1787659|gb|AAC74475.1| putative enzyme [Escherichia coli K12]
>gi|1787660|gb|AAC74476.1| putative enzyme [Escherichia coli K12]
>gi|1787661|gb|AAC74477.1| putative enzyme [Escherichia coli K12]
>gi|1788597|gb|AAC75322.1| dihydroxynaphtoic acid synthetase [Escherichia coli K12]
>gi|1788682|gb|AAC75401.1| putative enzyme [Escherichia coli K12]
>gi|1789286|gb|AAC75956.1| putative enzyme [Escherichia coli K12]
>gi|1790281|gb|AAC76849.1| 4-enzyme protein: 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase; delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase; enoyl-CoA hydratase [Escherichia coli K12]
--- CLUSTER 862 ---
>gi|1573992|gb|AAC22626.1| O-succinylbenzoate-CoA synthase (menC) [Haemophilus influenzae Rd]
>gi|1788596|gb|AAC75321.1| o-succinylbenzoyl-CoA synthase; conversion of chorismate to 2-o-succinylbenzoyl-CoA [Escherichia coli K12]
--- CLUSTER 863 ---
>gi|1573998|gb|AAC22631.1| acetyl-CoA carboxylase, biotin carboxyl carrier protein (accB) [Haemophilus influenzae Rd]
>gi|1789653|gb|AAC76287.1| acetylCoA carboxylase, BCCP subunit; carrier of biotin [Escherichia coli K12]
--- CLUSTER 864 --- SPLIT INTO 1760 1761
>gi|1573999|gb|AAC22632.1| acetyl-CoA carboxylase, biotin carboxylase (accC) [Haemophilus influenzae Rd]
>gi|1786216|gb|AAC73144.1| carbamoyl-phosphate synthase large subunit [Escherichia coli K12]
>gi|1789654|gb|AAC76288.1| acetyl CoA carboxylase, biotin carboxylase subunit [Escherichia coli K12]
--- CLUSTER 865 ---
>gi|1574002|gb|AAC22633.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789655|gb|AAC76289.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 866 ---
>gi|1574006|gb|AAC22638.1| ribosomal protein L11 methyltransferase (prmA) [Haemophilus influenzae Rd]
>gi|2367208|gb|AAC76291.1| methylase for 50S ribosomal subunit protein L11 [Escherichia coli K12]
--- CLUSTER 867 ---
>gi|1574008|gb|AAC22640.1| Hin recombinational enhancer binding protein (fis) [Haemophilus influenzae Rd]
>gi|1789661|gb|AAC76293.1| site-specific DNA inversion stimulation factor; DNA-binding protein; a trans activator for transcription [Escherichia coli K12]
--- CLUSTER 868 ---
>gi|1574010|gb|AAC22643.1| small protein B (smpB) [Haemophilus influenzae Rd]
>gi|1788973|gb|AAC75669.1| small protein B [Escherichia coli K12]
--- CLUSTER 869 ---
>gi|1574011|gb|AAC22644.1| 6-phosphofructokinase (pfkA) [Haemophilus influenzae Rd]
>gi|1790350|gb|AAC76898.1| 6-phosphofructokinase I [Escherichia coli K12]
--- CLUSTER 870 ---
>gi|1574013|gb|AAC22645.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786187|gb|AAC73117.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 871 ---
>gi|1574014|gb|AAC22646.1| DNA processing chain A (dprA) [Haemophilus influenzae Rd]
>gi|1789681|gb|AAC76311.1| orf, fragment 1 [Escherichia coli K12]
--- CLUSTER 872 ---
>gi|1574015|gb|AAC22647.1| 2-isopropylmalate synthase (leuA) [Haemophilus influenzae Rd]
>gi|1786261|gb|AAC73185.1| 2-isopropylmalate synthase [Escherichia coli K12]
>gi|1786548|gb|AAC73455.1| 4-hydroxy-2-ketovalerate aldolase [Escherichia coli K12]
--- CLUSTER 873 ---
>gi|1574016|gb|AAC22648.1| 3-isopropylmalate dehydrogenase (beta-IPM dehydrogenase) (leuB) [Haemophilus influenzae Rd]
>gi|1786260|gb|AAC73184.1| 3-isopropylmalate dehydrogenase [Escherichia coli K12]
>gi|1787381|gb|AAC74220.1| isocitrate dehydrogenase, specific for NADP+ [Escherichia coli K12]
>gi|1788101|gb|AAC74870.1| putative tartrate dehydrogenase [Escherichia coli K12]
--- CLUSTER 874 --- SPLIT INTO 1762 1763
>gi|1574017|gb|AAC22649.1| 3-isopropylmalate dehydratase, alpha subunit (leuC) [Haemophilus influenzae Rd]
>gi|1786259|gb|AAC73183.1| 3-isopropylmalate isomerase (dehydratase) subunit [Escherichia coli K12]
>gi|2367097|gb|AAC73229.1| aconitate hydrase B [Escherichia coli K12]
>gi|1786987|gb|AAC73858.1| putative enzyme [Escherichia coli K12]
>gi|1787531|gb|AAC74358.1| aconitate hydrase 1 [Escherichia coli K12]
--- CLUSTER 875 ---
>gi|1574018|gb|AAC22650.1| 3-isopropylmalate dehydratase small subunit (leuD) [Haemophilus influenzae Rd]
>gi|1786258|gb|AAC73182.1| isopropylmalate isomerase subunit [Escherichia coli K12]
--- CLUSTER 876 ---
>gi|1574021|gb|AAC22653.1| DNA/ATP binding protein (recF) [Haemophilus influenzae Rd]
>gi|1790135|gb|AAC76723.1| ssDNA and dsDNA binding, ATP binding [Escherichia coli K12]
--- CLUSTER 877 ---
>gi|1574022|gb|AAC22654.1| DNA polymerase III, beta subunit (dnaN) [Haemophilus influenzae Rd]
>gi|1790136|gb|AAC76724.1| DNA polymerase III, beta-subunit [Escherichia coli K12]
--- CLUSTER 878 ---
>gi|3212215|gb|AAC22879.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788842|gb|AAC75549.1| putative DNA replication factor [Escherichia coli K12]
--- CLUSTER 879 --- SPLIT INTO 1764 1765
>gi|1574023|gb|AAC22655.1| chromosomal replication initiator protein (dnaA) [Haemophilus influenzae Rd]
>gi|1788842|gb|AAC75549.1| putative DNA replication factor [Escherichia coli K12]
>gi|2367267|gb|AAC76725.1| DNA biosynthesis; initiation of chromosome replication; can be transcription regulator [Escherichia coli K12]
--- CLUSTER 880 ---
>gi|1574029|gb|AAC22660.1| ribosomal protein L34 (rpL34) [Haemophilus influenzae Rd]
>gi|1790138|gb|AAC76726.1| 50S ribosomal subunit protein L34 [Escherichia coli K12]
--- CLUSTER 881 ---
>gi|1574030|gb|AAC22661.1| ribonuclease P (rnpA) [Haemophilus influenzae Rd]
>gi|1790139|gb|AAC76727.1| RNase P, protein component; protein C5; processes tRNA, 4.5S RNA [Escherichia coli K12]
--- CLUSTER 882 ---
>gi|1574032|gb|AAC22663.1| inner membrane protein, 60 kDa (yidC) [Haemophilus influenzae Rd]
>gi|1790140|gb|AAC76728.1| 60 KD inner-membrane protein [Escherichia coli K12]
--- CLUSTER 883 ---
>gi|1574036|gb|AAC22667.1| lipoprotein signal peptidase (lspA) [Haemophilus influenzae Rd]
>gi|1786210|gb|AAC73138.1| prolipoprotein signal peptidase (SPase II) [Escherichia coli K12]
--- CLUSTER 884 ---
>gi|1574037|gb|AAC22668.1| penicillin tolerance protein (lytB) [Haemophilus influenzae Rd]
>gi|1786212|gb|AAC73140.1| control of stringent response; involved in penicillin tolerance [Escherichia coli K12]
--- CLUSTER 885 ---
>gi|1574038|gb|AAC22669.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786646|gb|AAC73545.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 886 ---
>gi|1574043|gb|AAC22672.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789093|gb|AAC75779.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 887 ---
>gi|1786718|gb|AAC73610.1| glyoxylate-induced protein [Escherichia coli K12]
>gi|1787573|gb|AAC74396.1| putative transient receptor potential locus [Escherichia coli K12]
--- CLUSTER 888 ---
>gi|1574045|gb|AAC22674.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786718|gb|AAC73610.1| glyoxylate-induced protein [Escherichia coli K12]
>gi|1789095|gb|AAC75781.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 889 ---
>gi|1574048|gb|AAC22678.1| thiamin ABC transporter, periplasmic-binding protein (tbpA) [Haemophilus influenzae Rd]
>gi|1786255|gb|AAC73179.1| thiamin-binding periplasmic protein [Escherichia coli K12]
--- CLUSTER 890 ---
>gi|1574054|gb|AAC22682.1| biotin synthetase (bioB) [Haemophilus influenzae Rd]
>gi|1786992|gb|AAC73862.1| biotin synthesis, sulfur insertion? [Escherichia coli K12]
--- CLUSTER 891 ---
>gi|1574056|gb|AAC22684.1| hexulose-6-phosphate synthase, putative [Haemophilus influenzae Rd]
>gi|1790006|gb|AAC76605.1| probable 3-hexulose 6-phosphate synthase [Escherichia coli K12]
>gi|1790640|gb|AAC77153.1| probable hexulose-6-phosphate synthase [Escherichia coli K12]
--- CLUSTER 892 ---
>gi|1574058|gb|AAC22686.1| hexulose-6-phosphate isomerase, putative [Haemophilus influenzae Rd]
>gi|1790007|gb|AAC76606.1| probable 3-hexulose-6-phosphate isomerase [Escherichia coli K12]
>gi|1790641|gb|AAC77154.1| putative hexulose-6-phosphate isomerase [Escherichia coli K12]
--- CLUSTER 893 ---
>gi|1574063|gb|AAC22691.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786727|gb|AAC73619.1| putative malate dehydrogenase (EC 1.1.1.37) [Escherichia coli K12]
>gi|1787020|gb|AAC73888.1| putative dehydrogenase [Escherichia coli K12]
>gi|1790000|gb|AAC76599.1| putative dehydrogenase [Escherichia coli K12]
--- CLUSTER 894 --- SPLIT INTO 1766 1767
>gi|1574065|gb|AAC22692.1| transcriptional regulator, putative [Haemophilus influenzae Rd]
>gi|1786468|gb|AAC73375.1| putative regulator [Escherichia coli K12]
>gi|1786541|gb|AAC73449.1| transcriptional regulator for mhp operon [Escherichia coli K12]
>gi|1786715|gb|AAC73608.1| putative regulator [Escherichia coli K12]
>gi|1788131|gb|AAC74897.1| putative regulator [Escherichia coli K12]
>gi|1788581|gb|AAC75308.1| putative regulator [Escherichia coli K12]
>gi|1789999|gb|AAC76598.1| putative regulator [Escherichia coli K12]
>gi|1790449|gb|AAC76988.1| repressor of aceBA operon [Escherichia coli K12]
>gi|1790752|gb|AAC77255.1| putative regulator [Escherichia coli K12]
--- CLUSTER 895 ---
>gi|1574066|gb|AAC22693.1| phosphoserine phosphatase (serB) [Haemophilus influenzae Rd]
>gi|1790849|gb|AAC77341.1| 3-phosphoserine phosphatase [Escherichia coli K12]
--- CLUSTER 896 ---
>gi|1574067|gb|AAC22694.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786629|gb|AAC73529.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 897 ---
>gi|1574068|gb|AAC22695.1| magnesium and cobalt transport protein (corA) [Haemophilus influenzae Rd]
>gi|2367297|gb|AAC76819.1| Mg2+ transport, system I [Escherichia coli K12]
--- CLUSTER 898 ---
>gi|1574069|gb|AAC22696.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789322|gb|AAC75989.1| putative resistance protein [Escherichia coli K12]
--- CLUSTER 899 ---
>gi|1574070|gb|AAC22697.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786417|gb|AAC73327.1| putative amidotransferase [Escherichia coli K12]
--- CLUSTER 900 ---
>gi|1574385|gb|AAC23193.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787272|gb|AAC74119.1| putative oxidoreductase component [Escherichia coli K12]
>gi|1787874|gb|AAC74663.1| putative oxidoreductase component [Escherichia coli K12]
--- CLUSTER 901 ---
>gi|1574078|gb|AAC22703.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787874|gb|AAC74663.1| putative oxidoreductase component [Escherichia coli K12]
--- CLUSTER 902 ---
>gi|1574079|gb|AAC22704.1| anaerobic dimethyl sulfoxide reductase, chain C (dmsC) [Haemophilus influenzae Rd]
>gi|1787123|gb|AAC73982.1| anaerobic dimethyl sulfoxide reductase subunit C [Escherichia coli K12]
>gi|1787873|gb|AAC74662.1| putative DMSO reductase anchor subunit [Escherichia coli K12]
--- CLUSTER 903 ---
>gi|1574610|gb|AAC22714.1| ribonuclease HII (rnhB) [Haemophilus influenzae Rd]
>gi|1786380|gb|AAC73294.1| RNAse HII, degrades RNA of DNA-RNA hybrids [Escherichia coli K12]
--- CLUSTER 904 ---
>gi|1574611|gb|AAC22715.1| lipid-A-disaccharide synthetase (lpxB) [Haemophilus influenzae Rd]
>gi|1786379|gb|AAC73293.1| tetraacyldisaccharide-1-P; lipid A biosynthesis, penultimate step [Escherichia coli K12]
--- CLUSTER 905 ---
>gi|1574613|gb|AAC22717.1| (3R)-hydroxymyristol (acyl carrier protein) dehydrase (fabZ) [Haemophilus influenzae Rd]
>gi|1786377|gb|AAC73291.1| (3R)-hydroxymyristol acyl carrier protein dehydratase [Escherichia coli K12]
--- CLUSTER 906 ---
>gi|1574616|gb|AAC22719.1| uridylate kinase (pyrH) [Haemophilus influenzae Rd]
>gi|1786367|gb|AAC73282.1| uridylate kinase [Escherichia coli K12]
--- CLUSTER 907 ---
>gi|1574620|gb|AAC22724.1| nitrite reductase, transmembrane protein (nrfD) [Haemophilus influenzae Rd]
>gi|1790509|gb|AAC77043.1| formate-dependent nitrate reductase complex; transmembrane protein [Escherichia coli K12]
--- CLUSTER 908 ---
>gi|1574622|gb|AAC22726.1| nitrite reductase, cytochrome C-type protein (nrfB) [Haemophilus influenzae Rd]
>gi|1790507|gb|AAC77041.1| formate-dependent nitrite reductase; a penta-haeme cytochrome c [Escherichia coli K12]
--- CLUSTER 909 ---
>gi|1574623|gb|AAC22727.1| nitrite reductase, cytochrome C552 (nrfA) [Haemophilus influenzae Rd]
>gi|1790506|gb|AAC77040.1| periplasmic cytochrome c(552): plays a role in nitrite reduction [Escherichia coli K12]
--- CLUSTER 910 --- SPLIT INTO 1768 1769
>gi|1574628|gb|AAC22728.1| ATP-dependent helicase (hrpa) [Haemophilus influenzae Rd]
>gi|1786342|gb|AAC73259.1| helicase, ATP-dependent [Escherichia coli K12]
>gi|1787681|gb|AAC74495.1| helicase, ATP-dependent [Escherichia coli K12]
--- CLUSTER 911 ---
>gi|1574624|gb|AAC22729.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789172|gb|AAC75849.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 912 ---
>gi|1574625|gb|AAC22730.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788090|gb|AAC74859.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 913 ---
>gi|1574626|gb|AAC22731.1| cytochrome D ubiquinol oxidase, subunit II (cydB) [Haemophilus influenzae Rd]
>gi|1786954|gb|AAC73828.1| cytochrome d terminal oxidase polypeptide subunit II [Escherichia coli K12]
>gi|1787213|gb|AAC74064.1| probable third cytochrome oxidase, subunit II [Escherichia coli K12]
--- CLUSTER 914 ---
>gi|1574627|gb|AAC22732.1| cytochrome D ubiquinol oxidase, subunit I (cydA) [Haemophilus influenzae Rd]
>gi|1786953|gb|AAC73827.1| cytochrome d terminal oxidase, polypeptide subunit I [Escherichia coli K12]
>gi|1787212|gb|AAC74063.1| probable third cytochrome oxidase, subunit I [Escherichia coli K12]
--- CLUSTER 915 ---
>gi|1574630|gb|AAC22733.1| CTP synthetase (pyrG) [Haemophilus influenzae Rd]
>gi|1789142|gb|AAC75822.1| CTP synthetase [Escherichia coli K12]
--- CLUSTER 916 ---
>gi|1574635|gb|AAC22737.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase (murZ) [Haemophilus influenzae Rd]
>gi|1789580|gb|AAC76221.1| first step in murein biosynthesis;UDP-N-glucosamine 1-carboxyvinyltransferase [Escherichia coli K12]
--- CLUSTER 917 ---
>gi|1574636|gb|AAC22738.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789581|gb|AAC76222.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 918 ---
>gi|1574638|gb|AAC22740.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789583|gb|AAC76224.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 919 ---
>gi|1574639|gb|AAC22741.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789584|gb|AAC76225.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 920 ---
>gi|1574640|gb|AAC22742.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789585|gb|AAC76226.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 921 ---
>gi|1574643|gb|AAC22745.1| superoxide dismutase (sodA) [Haemophilus influenzae Rd]
>gi|1787946|gb|AAC74728.1| superoxide dismutase, iron [Escherichia coli K12]
>gi|1790342|gb|AAC76890.1| superoxide dismutase, manganese [Escherichia coli K12]
--- CLUSTER 922 ---
>gi|1574645|gb|AAC22747.1| heme exporter protein B (ccmB) [Haemophilus influenzae Rd]
>gi|1788528|gb|AAC75260.1| heme exporter protein B, cytochrome c-type biogenesis protein [Escherichia coli K12]
--- CLUSTER 923 ---
>gi|1574646|gb|AAC22748.1| heme exporter protein C (ccmC) [Haemophilus influenzae Rd]
>gi|1788527|gb|AAC75259.1| heme exporter protein C [Escherichia coli K12]
--- CLUSTER 924 ---
>gi|1574647|gb|AAC22749.1| heme exporter protein D (ccmD) [Haemophilus influenzae Rd]
>gi|1788526|gb|AAC75258.1| heme exporter protein C [Escherichia coli K12]
--- CLUSTER 925 ---
>gi|1574648|gb|AAC22750.1| cytochrome C-type biogenesis protein (ccmE) [Haemophilus influenzae Rd]
>gi|1788525|gb|AAC75257.1| cytochrome c biogenesis, possible subunit of a heme lyase [Escherichia coli K12]
--- CLUSTER 926 ---
>gi|1788750|gb|AAC75464.1| DNA ligase [Escherichia coli K12]
>gi|1790079|gb|AAC76671.1| putative enzyme [Escherichia coli K12]
--- CLUSTER 927 ---
>gi|1574651|gb|AAC22753.1| DNA ligase (lig) [Haemophilus influenzae Rd]
>gi|1788750|gb|AAC75464.1| DNA ligase [Escherichia coli K12]
--- CLUSTER 928 ---
>gi|1574437|gb|AAC23240.1| cell division protein FtsK-related protein [Haemophilus influenzae Rd]
>gi|1787117|gb|AAC73976.1| cell division protein [Escherichia coli K12]
--- CLUSTER 929 ---
>gi|1787117|gb|AAC73976.1| cell division protein [Escherichia coli K12]
>gi|1788752|gb|AAC75465.1| cell division protein involved in FtsZ ring [Escherichia coli K12]
--- CLUSTER 930 ---
>gi|1574655|gb|AAC22756.1| cell division protein ZipA, putative [Haemophilus influenzae Rd]
>gi|1788752|gb|AAC75465.1| cell division protein involved in FtsZ ring [Escherichia coli K12]
--- CLUSTER 931 ---
>gi|1574656|gb|AAC22757.1| cysteine synthetase, putative (cysZ) [Haemophilus influenzae Rd]
>gi|1788753|gb|AAC75466.1| required for sulfate transport [Escherichia coli K12]
--- CLUSTER 932 ---
>gi|1574666|gb|AAC22766.1| xylose isomerase (xylA) [Haemophilus influenzae Rd]
>gi|1789988|gb|AAC76589.1| D-xylose isomerase [Escherichia coli K12]
--- CLUSTER 933 ---
>gi|1574670|gb|AAC22770.1| deoxyribose-phosphate aldolase (deoC) [Haemophilus influenzae Rd]
>gi|1790841|gb|AAC77334.1| 2-deoxyribose-5-phosphate aldolase [Escherichia coli K12]
--- CLUSTER 934 ---
>gi|1574671|gb|AAC22771.1| competence protein (comM) [Haemophilus influenzae Rd]
>gi|1790201|gb|AAC77486.1| putative 2-component regulator [Escherichia coli K12]
--- CLUSTER 935 ---
>gi|1574673|gb|AAC22772.1| conserved hypothetical GTP-binding protein [Haemophilus influenzae Rd]
>gi|1790296|gb|AAC76862.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 936 ---
>gi|1574680|gb|AAC22779.1| transaldolase B (talB) [Haemophilus influenzae Rd]
>gi|1786189|gb|AAC73119.1| transaldolase B [Escherichia coli K12]
>gi|1788807|gb|AAC75517.1| transaldolase A [Escherichia coli K12]
--- CLUSTER 937 ---
>gi|3212213|gb|AAC22781.1| H. influenzae predicted coding region HI1126.1 [Haemophilus influenzae Rd]
>gi|1786814|gb|AAC73699.1| carbon starvation protein [Escherichia coli K12]
>gi|1790814|gb|AAC77310.1| putative carbon starvation protein [Escherichia coli K12]
--- CLUSTER 938 ---
>gi|1574684|gb|AAC22784.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786269|gb|AAC73192.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 939 ---
>gi|1574685|gb|AAC22785.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786270|gb|AAC73193.1| putative apolipoprotein [Escherichia coli K12]
--- CLUSTER 940 ---
>gi|1574686|gb|AAC22786.1| cell division protein (ftsL) [Haemophilus influenzae Rd]
>gi|1786271|gb|AAC73194.1| cell division protein; ingrowth of wall at septum [Escherichia coli K12]
--- CLUSTER 941 ---
>gi|1574688|gb|AAC22788.1| UDP-N-acetylmuramyl-tripeptide synthetase (murE) [Haemophilus influenzae Rd]
>gi|1786273|gb|AAC73196.1| meso-diaminopimelate-adding enzyme [Escherichia coli K12]
--- CLUSTER 942 ---
>gi|1574690|gb|AAC22790.1| phospho-N-acetylmuramoyl-pentapeptide-transferase E (mraY) [Haemophilus influenzae Rd]
>gi|1786275|gb|AAC73198.1| phospho-N-acetylmuramoyl-pentapeptide transferase? [Escherichia coli K12]
--- CLUSTER 943 ---
>gi|1574693|gb|AAC22793.1| UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (murG) [Haemophilus influenzae Rd]
>gi|1786278|gb|AAC73201.1| UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [Escherichia coli K12]
--- CLUSTER 944 ---
>gi|1574696|gb|AAC22795.1| D-alanine--D-alanine ligase (ddlB) [Haemophilus influenzae Rd]
>gi|1786280|gb|AAC73203.1| D-alanine-D-alanine ligase B, affects cell division [Escherichia coli K12]
>gi|1786579|gb|AAC73484.1| D-alanine-D-alanine ligase A [Escherichia coli K12]
--- CLUSTER 945 ---
>gi|1574697|gb|AAC22796.1| cell division protein (ftsQ) [Haemophilus influenzae Rd]
>gi|1786281|gb|AAC73204.1| cell division protein; ingrowth of wall at septum [Escherichia coli K12]
--- CLUSTER 946 ---
>gi|1574698|gb|AAC22797.1| cell division protein (ftsA) [Haemophilus influenzae Rd]
>gi|1786282|gb|AAC73205.1| ATP-binding cell division protein, septation process, complexes with FtsZ, associated with junctions of inner and outer membranes [Escherichia coli K12]
--- CLUSTER 947 ---
>gi|1574699|gb|AAC22798.1| cell division protein (ftsZ) [Haemophilus influenzae Rd]
>gi|1786284|gb|AAC73206.1| cell division; forms circumferential ring; tubulin-like GTP-binding protein and GTPase [Escherichia coli K12]
--- CLUSTER 948 ---
>gi|1574700|gb|AAC22799.1| UDP-3-0-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase (lpxC) [Haemophilus influenzae Rd]
>gi|1786285|gb|AAC73207.1| UDP-3-O-acyl N-acetylglucosamine deacetylase; lipid A biosynthesis [Escherichia coli K12]
--- CLUSTER 949 ---
>gi|1574701|gb|AAC22800.1| chorismate mutase / prephenate dehydratase (pheA) [Haemophilus influenzae Rd]
>gi|1788951|gb|AAC75648.1| chorismate mutase-P and prephenate dehydratase [Escherichia coli K12]
--- CLUSTER 950 ---
>gi|1574702|gb|AAC22801.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789598|gb|AAC76237.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 951 ---
>gi|1574705|gb|AAC22804.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789592|gb|AAC76232.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 952 ---
>gi|1574706|gb|AAC22805.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789591|gb|AAC76231.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 953 ---
>gi|1574707|gb|AAC22806.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790681|gb|AAC77191.1| putative alpha helix protein [Escherichia coli K12]
--- CLUSTER 954 ---
>gi|1574709|gb|AAC22807.1| pmbA protein (pmbA) [Haemophilus influenzae Rd]
>gi|1790682|gb|AAC77192.1| maturation of antibiotic MccB17, see tld genes [Escherichia coli K12]
--- CLUSTER 955 ---
>gi|1574710|gb|AAC22808.1| hypoxanthine phosphoribosyltransferase (hpt) [Haemophilus influenzae Rd]
>gi|1786317|gb|AAC73236.1| hypoxanthine phosphoribosyltransferase [Escherichia coli K12]
--- CLUSTER 956 ---
>gi|1574087|gb|AAC22815.1| ferrochelatase (hemH) [Haemophilus influenzae Rd]
>gi|1786681|gb|AAC73577.1| ferrochelatase: final enzyme of heme biosynthesis [Escherichia coli K12]
--- CLUSTER 957 ---
>gi|1574088|gb|AAC22816.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786813|gb|AAC73698.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787976|gb|AAC74756.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 958 ---
>gi|1574092|gb|AAC22820.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787943|gb|AAC74726.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 959 ---
>gi|1574094|gb|AAC22822.1| phosphoserine aminotransferase (serC) [Haemophilus influenzae Rd]
>gi|1787136|gb|AAC73993.1| 3-phosphoserine aminotransferase [Escherichia coli K12]
--- CLUSTER 960 ---
>gi|1574108|gb|AAC22823.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788317|gb|AAC75068.1| putative alpha helix protein [Escherichia coli K12]
--- CLUSTER 961 ---
>gi|1574099|gb|AAC22825.1| S-adenosylmethionine synthetase (metX) [Haemophilus influenzae Rd]
>gi|1789311|gb|AAC75979.1| methionine adenosyltransferase 1 (AdoMet synthetase); methyl and propylamine donor, corepressor of met genes [Escherichia coli K12]
--- CLUSTER 962 ---
>gi|1574100|gb|AAC22826.1| sprt protein (sprT) [Haemophilus influenzae Rd]
>gi|1789313|gb|AAC75981.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 963 ---
>gi|1574116|gb|AAC22842.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789139|gb|AAC75819.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 964 ---
>gi|1574118|gb|AAC22844.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786648|gb|AAC73547.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 965 ---
>gi|1574120|gb|AAC22845.1| branched-chain-amino-acid transaminase (ilvE) [Haemophilus influenzae Rd]
>gi|1790205|gb|AAC77490.1| branched-chain amino-acid aminotransferase [Escherichia coli K12]
--- CLUSTER 966 ---
>gi|1574124|gb|AAC22849.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789171|gb|AAC75848.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 967 ---
>gi|1574125|gb|AAC22850.1| succinyl-CoA synthetase, beta subunit (sucC) [Haemophilus influenzae Rd]
>gi|1786948|gb|AAC73822.1| succinyl-CoA synthetase, beta subunit [Escherichia coli K12]
--- CLUSTER 968 ---
>gi|1786513|gb|AAC73423.1| putative oxidoreductase subunit [Escherichia coli K12]
>gi|1786729|gb|AAC73620.1| involved in protein transport; multicopy suppressor of dominant negative ftsH mutants [Escherichia coli K12]
--- CLUSTER 969 --- SPLIT INTO 1770 1771
>gi|1574126|gb|AAC22851.1| succinyl-CoA synthetase, alpha subunit (sucD) [Haemophilus influenzae Rd]
>gi|1786513|gb|AAC73423.1| putative oxidoreductase subunit [Escherichia coli K12]
>gi|1786949|gb|AAC73823.1| succinyl-CoA synthetase, alpha subunit [Escherichia coli K12]
--- CLUSTER 970 ---
>gi|1787602|gb|AAC74422.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788671|gb|AAC75391.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 971 ---
>gi|1574132|gb|AAC22856.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788671|gb|AAC75391.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 972 ---
>gi|1574134|gb|AAC22858.1| acetate kinase (ackA) [Haemophilus influenzae Rd]
>gi|1788633|gb|AAC75356.1| acetate kinase [Escherichia coli K12]
>gi|1789503|gb|AAC76150.1| putative kinase [Escherichia coli K12]
--- CLUSTER 973 ---
>gi|1574135|gb|AAC22859.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788632|gb|AAC75355.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 974 ---
>gi|1574136|gb|AAC22860.1| colicin V production protein (cvpA) [Haemophilus influenzae Rd]
>gi|1788652|gb|AAC75373.1| membrane protein required for colicin V production [Escherichia coli K12]
--- CLUSTER 975 ---
>gi|1574138|gb|AAC22862.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788642|gb|AAC75364.1| putative sugar nucleotide epimerase [Escherichia coli K12]
--- CLUSTER 976 ---
>gi|1574139|gb|AAC22863.1| arginine repressor (argR) [Haemophilus influenzae Rd]
>gi|1789633|gb|AAC76269.1| repressor of arg regulon; cer-mediated site specific recombination [Escherichia coli K12]
--- CLUSTER 977 ---
>gi|1574140|gb|AAC22864.1| malate dehydrogenase (mdh) [Haemophilus influenzae Rd]
>gi|1789632|gb|AAC76268.1| malate dehydrogenase [Escherichia coli K12]
--- CLUSTER 978 ---
>gi|1786821|gb|AAC73705.1| thiol:disulfide interchange protein [Escherichia coli K12]
>gi|1789260|gb|AAC75931.1| protein disulfide isomerase II [Escherichia coli K12]
--- CLUSTER 979 ---
>gi|1574142|gb|AAC22866.1| thiol:disulfide interchange protein (dsbC) [Haemophilus influenzae Rd]
>gi|1789260|gb|AAC75931.1| protein disulfide isomerase II [Escherichia coli K12]
--- CLUSTER 980 ---
>gi|1574144|gb|AAC22867.1| single-stranded-DNA-specific exonuclease (recJ) [Haemophilus influenzae Rd]
>gi|1789259|gb|AAC75930.1| ssDNA exonuclease, 5' --> 3' specific [Escherichia coli K12]
--- CLUSTER 981 ---
>gi|1574148|gb|AAC22871.1| L-lactate permease (lctP) [Haemophilus influenzae Rd]
>gi|1789347|gb|AAC76011.1| putative permease [Escherichia coli K12]
>gi|1790031|gb|AAC76627.1| L-lactate permease [Escherichia coli K12]
--- CLUSTER 982 ---
>gi|1574153|gb|AAC22875.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787535|gb|AAC74361.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 983 ---
>gi|1574154|gb|AAC22876.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|2367116|gb|AAC74362.1| putative heat shock protein [Escherichia coli K12]
--- CLUSTER 984 ---
>gi|1574155|gb|AAC22877.1| orotidine 5'-phosphate decarboxylase (pyrF) [Haemophilus influenzae Rd]
>gi|1787537|gb|AAC74363.1| orotidine-5'-phosphate decarboxylase [Escherichia coli K12]
--- CLUSTER 985 ---
>gi|1574156|gb|AAC22878.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787538|gb|AAC74364.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 986 ---
>gi|1574158|gb|AAC22881.1| uracil phosphoribosyltransferase (upp) [Haemophilus influenzae Rd]
>gi|1788844|gb|AAC75551.1| uracil phosphoribosyltransferase [Escherichia coli K12]
--- CLUSTER 987 ---
>gi|1574160|gb|AAC22883.1| adenine phosphoribosyltransferase (apt) [Haemophilus influenzae Rd]
>gi|1786675|gb|AAC73571.1| adenine phosphoribosyltransferase [Escherichia coli K12]
--- CLUSTER 988 ---
>gi|1574165|gb|AAC22887.1| methylglyoxal synthase (mgsA) [Haemophilus influenzae Rd]
>gi|1787197|gb|AAC74049.1| methylglyoxal synthase [Escherichia coli K12]
--- CLUSTER 989 --- SPLIT INTO 1772 1773
>gi|1574166|gb|AAC22888.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787900|gb|AAC74686.1| orf, hypothetical protein [Escherichia coli K12]
>gi|2367319|gb|AAC76859.1| putative GTP-binding protein [Escherichia coli K12]
--- CLUSTER 990 ---
>gi|1574168|gb|AAC22890.1| heat shock protein (dnaJ) [Haemophilus influenzae Rd]
>gi|1786197|gb|AAC73126.1| chaperone with DnaK; heat shock protein [Escherichia coli K12]
>gi|1787235|gb|AAC74085.1| curved DNA-binding protein; functions closely related to DnaJ [Escherichia coli K12]
--- CLUSTER 991 ---
>gi|1787493|gb|AAC74323.1| CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase; pyruvate-formate-lyase deactivase [Escherichia coli K12]
>gi|1788795|gb|AAC75506.1| ethanolamine utilization; homolog of Salmonella enzyme, similar to iron-containing alcohol dehydrogenase [Escherichia coli K12]
>gi|1789163|gb|AAC75841.1| L-1,2-propanediol oxidoreductase [Escherichia coli K12]
>gi|1789386|gb|AAC76047.1| putative oxidoreductase [Escherichia coli K12]
>gi|1790015|gb|AAC76613.1| putative oxidoreductase [Escherichia coli K12]
--- CLUSTER 992 ---
>gi|1786504|gb|AAC73415.1| NAD+-dependent betaine aldehyde dehydrogenase [Escherichia coli K12]
>gi|1787250|gb|AAC74099.1| proline dehydrogenase, P5C dehydrogenase [Escherichia coli K12]
>gi|1787493|gb|AAC74323.1| CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase; pyruvate-formate-lyase deactivase [Escherichia coli K12]
>gi|1787558|gb|AAC74382.1| aldehyde dehydrogenase, prefers NADP over NAD [Escherichia coli K12]
>gi|1787650|gb|AAC74467.1| phenylacetaldehyde dehydrogenase [Escherichia coli K12]
>gi|1787653|gb|AAC74469.1| putative aldehyde dehydrogenase [Escherichia coli K12]
>gi|1787684|gb|AAC74497.1| aldehyde dehydrogenase, NAD-linked [Escherichia coli K12]
>gi|1787715|gb|AAC74526.1| putative aldehyde dehydrogenase [Escherichia coli K12]
>gi|1787805|gb|AAC74598.1| putative aldehyde dehydrogenase [Escherichia coli K12]
>gi|1788042|gb|AAC74816.1| putative aldehyde dehydrogenase [Escherichia coli K12]
>gi|1788797|gb|AAC75508.1| ethanolamine utilization; similar to acetaldehyde dehydrogenase [Escherichia coli K12]
>gi|1789015|gb|AAC75708.1| succinate-semialdehyde dehydrogenase, NADP-dependent activity [Escherichia coli K12]
>gi|1790014|gb|AAC76612.1| aldehyde dehydrogenase B (lactaldehyde dehydrogenase) [Escherichia coli K12]
--- CLUSTER 993 ---
>gi|1574171|gb|AAC22892.1| gamma-glutamyl phosphate reductase (proA) [Haemophilus influenzae Rd]
>gi|1786438|gb|AAC73347.1| gamma-glutamylphosphate reductase [Escherichia coli K12]
>gi|1788797|gb|AAC75508.1| ethanolamine utilization; similar to acetaldehyde dehydrogenase [Escherichia coli K12]
--- CLUSTER 994 ---
>gi|1574172|gb|AAC22893.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1786352|gb|AAC73268.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790078|gb|AAC76670.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 995 ---
>gi|1574177|gb|AAC22900.1| H. influenzae predicted coding region HI1246 [Haemophilus influenzae Rd]
>gi|1790821|gb|AAC77315.1| phosphoglycerol transferase I [Escherichia coli K12]
--- CLUSTER 996 ---
>gi|1574178|gb|AAC22897.1| excinuclease ABC, subunit B (uvrB) [Haemophilus influenzae Rd]
>gi|1786996|gb|AAC73866.1| DNA repair; excision nuclease subunit B [Escherichia coli K12]
--- CLUSTER 997 ---
>gi|1574190|gb|AAC22907.1| H. influenzae predicted coding region HI1248 [Haemophilus influenzae Rd]
>gi|1788423|gb|AAC75167.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 998 ---
>gi|1574183|gb|AAC22901.1| virulence associated protein A (vapA) [Haemophilus influenzae Rd]
>gi|1786690|gb|AAC73585.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787751|gb|AAD13441.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 999 ---
>gi|1574187|gb|AAC22910.1| H. influenzae predicted coding region HI1255 [Haemophilus influenzae Rd]
>gi|1788818|gb|AAC75527.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1000 ---
>gi|1574191|gb|AAC22911.1| H. influenzae predicted coding region HI1256 [Haemophilus influenzae Rd]
>gi|1788818|gb|AAC75527.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1001 ---
>gi|1574186|gb|AAC22904.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788818|gb|AAC75527.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1002 ---
>gi|1574718|gb|AAC22913.1| acetyl-CoA carboxylase carboxyl transferase subunit beta (accD) [Haemophilus influenzae Rd]
>gi|1788655|gb|AAC75376.1| acetylCoA carboxylase, carboxytransferase component, beta subunit [Escherichia coli K12]
--- CLUSTER 1003 ---
>gi|1574719|gb|AAC22914.1| folylpolyglutamate synthase/dihydrofolate synthase (folC) [Haemophilus influenzae Rd]
>gi|1788654|gb|AAC75375.1| dihydrofolate:folylpolyglutamate synthetase; dihydrofolate synthetase [Escherichia coli K12]
--- CLUSTER 1004 ---
>gi|1574720|gb|AAC22915.1| sanA protein (sanA) [Haemophilus influenzae Rd]
>gi|1788466|gb|AAC75205.1| vancomycin sensitivity [Escherichia coli K12]
>gi|1789468|gb|AAC76121.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1005 ---
>gi|1574723|gb|AAC22918.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787133|gb|AAC73991.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1006 ---
>gi|1574729|gb|AAC22922.1| hydroxyacylglutathione hydrolase, putative [Haemophilus influenzae Rd]
>gi|1786406|gb|AAC73317.1| probable hydroxyacylglutathione hydrolase [Escherichia coli K12]
--- CLUSTER 1007 ---
>gi|1574730|gb|AAC22923.1| tellurite resistance protein (tehB) [Haemophilus influenzae Rd]
>gi|1787700|gb|AAC74512.1| tellurite resistance [Escherichia coli K12]
--- CLUSTER 1008 ---
>gi|1574732|gb|AAC22925.1| ATP-binding protein (mrp) [Haemophilus influenzae Rd]
>gi|1788431|gb|AAC75174.1| putative ATPase [Escherichia coli K12]
--- CLUSTER 1009 ---
>gi|1574733|gb|AAC22926.1| NAD(P)H-flavin oxidoreductase [Haemophilus influenzae Rd]
>gi|1786792|gb|AAC73679.1| oxygen-insensitive NAD(P)H nitroreductase [Escherichia coli K12]
--- CLUSTER 1010 ---
>gi|1574740|gb|AAC22931.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789561|gb|AAC76204.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1011 ---
>gi|1574741|gb|AAC22932.1| N utilization substance protein A (nusA) [Haemophilus influenzae Rd]
>gi|1789560|gb|AAC76203.1| transcription pausing; L factor [Escherichia coli K12]
--- CLUSTER 1012 ---
>gi|1574745|gb|AAC22936.1| type I modification enzyme (hsdM) [Haemophilus influenzae Rd]
>gi|1790808|gb|AAC77305.1| host modification; DNA methylase M [Escherichia coli K12]
--- CLUSTER 1013 ---
>gi|1574747|gb|AAC22937.1| ribosome binding factor A (rbfA) [Haemophilus influenzae Rd]
>gi|1789558|gb|AAC76201.1| ribosome-binding factor A [Escherichia coli K12]
--- CLUSTER 1014 ---
>gi|1574748|gb|AAC22938.1| tRNA pseudouridine 55 synthase (truB) [Haemophilus influenzae Rd]
>gi|2367200|gb|AAC76200.1| tRNA pseudouridine 5S synthase [Escherichia coli K12]
--- CLUSTER 1015 ---
>gi|1574749|gb|AAC22939.1| chorismate mutase / prephenate dehydrogenase (tyrA) [Haemophilus influenzae Rd]
>gi|1788952|gb|AAC75649.1| chorismate mutase-T and prephenate dehydrogenase [Escherichia coli K12]
--- CLUSTER 1016 ---
>gi|3212218|gb|AAC22947.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787969|gb|AAC74749.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789176|gb|AAC75853.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1017 ---
>gi|1574755|gb|AAC22943.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788463|gb|AAC75202.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1018 ---
>gi|1574756|gb|AAC22944.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1788464|gb|AAC75203.1| putative seritonin transporter [Escherichia coli K12]
--- CLUSTER 1019 ---
>gi|1574758|gb|AAC22946.1| carbonic anhydrase, putative [Haemophilus influenzae Rd]
>gi|1786318|gb|AAC73237.1| putative carbonic anhdrase (EC 4.2.1.1) [Escherichia coli K12]
>gi|1786534|gb|AAC73442.1| carbonic anhydrase [Escherichia coli K12]
--- CLUSTER 1020 ---
>gi|1574762|gb|AAC22950.1| riboflavin synthase, beta chain (ribH) [Haemophilus influenzae Rd]
>gi|1786617|gb|AAC73518.1| riboflavin synthase, beta chain [Escherichia coli K12]
--- CLUSTER 1021 ---
>gi|1574763|gb|AAC22951.1| N utilization substance protein B (nusB) [Haemophilus influenzae Rd]
>gi|1786618|gb|AAC73519.1| transcription termination; L factor [Escherichia coli K12]
--- CLUSTER 1022 ---
>gi|1574764|gb|AAC22952.1| thiamin-monophosphate kinase (thiL) [Haemophilus influenzae Rd]
>gi|1786619|gb|AAC73520.1| thiamin-monophosphate kinase [Escherichia coli K12]
--- CLUSTER 1023 ---
>gi|1574765|gb|AAC22953.1| phosphatidylglycerophosphatase A (pgpA) [Haemophilus influenzae Rd]
>gi|1786620|gb|AAC73521.1| phosphatidylglycerophosphatase [Escherichia coli K12]
--- CLUSTER 1024 ---
>gi|1788099|gb|AAC74868.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790258|gb|AAC76827.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1025 ---
>gi|1786522|gb|AAC73431.1| putative cytochrome subunit of dehydrogenase [Escherichia coli K12]
>gi|1789290|gb|AAC75960.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1026 --- SPLIT INTO 1774 1775 1776
>gi|1574766|gb|AAC22954.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786522|gb|AAC73431.1| putative cytochrome subunit of dehydrogenase [Escherichia coli K12]
>gi|1788099|gb|AAC74868.1| orf, hypothetical protein [Escherichia coli K12]
>gi|2367302|gb|AAC76826.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1027 ---
>gi|1574767|gb|AAC22955.1| dihydrodipicolinate reductase (dapB) [Haemophilus influenzae Rd]
>gi|1786214|gb|AAC73142.1| dihydrodipicolinate reductase [Escherichia coli K12]
--- CLUSTER 1028 ---
>gi|1574769|gb|AAC22957.1| phenylalanyl-tRNA synthetase, alpha subunit (pheS) [Haemophilus influenzae Rd]
>gi|1788007|gb|AAC74784.1| phenylalanine tRNA synthetase, alpha-subunit [Escherichia coli K12]
--- CLUSTER 1029 ---
>gi|1574770|gb|AAC22958.1| phenylalanyl-tRNA synthetase, beta subunit (pheT) [Haemophilus influenzae Rd]
>gi|1788006|gb|AAC74783.1| phenylalanine tRNA synthetase, beta-subunit [Escherichia coli K12]
--- CLUSTER 1030 ---
>gi|1787775|gb|AAC74571.1| putative sulfatase [Escherichia coli K12]
>gi|1790233|gb|AAC76804.1| arylsulfatase [Escherichia coli K12]
--- CLUSTER 1031 ---
>gi|1790112|gb|AAC76701.1| putative sulfatase [Escherichia coli K12]
>gi|1790233|gb|AAC76804.1| arylsulfatase [Escherichia coli K12]
--- CLUSTER 1032 ---
>gi|1574776|gb|AAC22970.1| H. influenzae predicted coding region HI1316 [Haemophilus influenzae Rd]
>gi|1790112|gb|AAC76701.1| putative sulfatase [Escherichia coli K12]
--- CLUSTER 1033 ---
>gi|1574777|gb|AAC22962.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788080|gb|AAC74850.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1034 ---
>gi|1574778|gb|AAC22963.1| translation initiation factor 3 (infC) [Haemophilus influenzae Rd]
>gi|1788012|gb|AAC74788.1| protein chain initiation factor IF-3 [Escherichia coli K12]
--- CLUSTER 1035 ---
>gi|1574779|gb|AAC22964.1| ribosomal protein L35 (rpL35) [Haemophilus influenzae Rd]
>gi|1788010|gb|AAC74787.1| 50S ribosomal subunit protein A [Escherichia coli K12]
--- CLUSTER 1036 ---
>gi|1574780|gb|AAC22965.1| ribosomal protein L20 (rpL20) [Haemophilus influenzae Rd]
>gi|1788009|gb|AAC74786.1| 50S ribosomal subunit protein L20, and regulator [Escherichia coli K12]
--- CLUSTER 1037 ---
>gi|1574782|gb|AAC22967.1| exodeoxyribonuclease V, alpha chain (recD) [Haemophilus influenzae Rd]
>gi|1789182|gb|AAC75858.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Escherichia coli K12]
--- CLUSTER 1038 ---
>gi|1574783|gb|AAC22968.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787190|gb|AAC74042.1| putative dehydrogenase [Escherichia coli K12]
--- CLUSTER 1039 ---
>gi|1574785|gb|AAC22971.1| lon protease, putative [Haemophilus influenzae Rd]
>gi|1787188|gb|AAC74041.1| putative ATP-dependent protease [Escherichia coli K12]
--- CLUSTER 1040 ---
>gi|1574786|gb|AAC22972.1| 3-hydroxydecanoyl-(acyl carrier-protein) dehydratase (fabA) [Haemophilus influenzae Rd]
>gi|1787187|gb|AAC74040.1| beta-hydroxydecanoyl thioester dehydrase, trans-2-decenoyl-ACP isomerase [Escherichia coli K12]
--- CLUSTER 1041 ---
>gi|1574789|gb|AAC22975.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (dacB) [Haemophilus influenzae Rd]
>gi|1789573|gb|AAC76214.1| D-alanyl-D-alanine carboxypeptidase, fraction B; penicillin-binding protein 4 [Escherichia coli K12]
--- CLUSTER 1042 ---
>gi|1574791|gb|AAC22977.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789570|gb|AAC76212.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1043 ---
>gi|1574792|gb|AAC22978.1| cell division protein (ftsJ) [Haemophilus influenzae Rd]
>gi|1789569|gb|AAC76211.1| cell division protein [Escherichia coli K12]
--- CLUSTER 1044 ---
>gi|1574810|gb|AAC22995.1| peptidase T (pepT) [Haemophilus influenzae Rd]
>gi|1787372|gb|AAC74211.1| putative peptidase T [Escherichia coli K12]
--- CLUSTER 1045 ---
>gi|1574812|gb|AAC22997.1| cytidine deaminase (cdd) [Haemophilus influenzae Rd]
>gi|1788465|gb|AAC75204.1| cytidine/deoxycytidine deaminase [Escherichia coli K12]
--- CLUSTER 1046 ---
>gi|1574813|gb|AAC22998.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788178|gb|AAC74941.1| putative enzyme [Escherichia coli K12]
--- CLUSTER 1047 ---
>gi|1574817|gb|AAC23002.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787429|gb|AAC74265.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1048 ---
>gi|1574819|gb|AAC23003.1| 4-alpha-glucanotransferase (malQ) [Haemophilus influenzae Rd]
>gi|1789821|gb|AAC76441.1| 4-alpha-glucanotransferase (amylomaltase) [Escherichia coli K12]
--- CLUSTER 1049 ---
>gi|1574821|gb|AAC23005.1| glycogen operon protein (glgX) [Haemophilus influenzae Rd]
>gi|2367229|gb|AAC76456.1| part of glycogen operon, a glycosyl hydrolase, debranching enzyme [Escherichia coli K12]
--- CLUSTER 1050 --- SPLIT INTO 1777 1778
>gi|1574820|gb|AAC23004.1| 1,4-alpha-glucan branching enzyme (glgB) [Haemophilus influenzae Rd]
>gi|2367229|gb|AAC76456.1| part of glycogen operon, a glycosyl hydrolase, debranching enzyme [Escherichia coli K12]
>gi|1789839|gb|AAC76457.1| 1,4-alpha-glucan branching enzyme [Escherichia coli K12]
--- CLUSTER 1051 ---
>gi|1574822|gb|AAC23006.1| glucose-1-phosphate adenylyltransferase (glgC) [Haemophilus influenzae Rd]
>gi|1789837|gb|AAC76455.1| glucose-1-phosphate adenylyltransferase [Escherichia coli K12]
--- CLUSTER 1052 ---
>gi|1574823|gb|AAC23007.1| glycogen synthase (glgA) [Haemophilus influenzae Rd]
>gi|1789836|gb|AAC76454.1| glycogen synthase [Escherichia coli K12]
--- CLUSTER 1053 ---
>gi|1574824|gb|AAC23008.1| glycogen phosphorylase (glgP) [Haemophilus influenzae Rd]
>gi|2367221|gb|AAC76442.1| maltodextrin phosphorylase [Escherichia coli K12]
>gi|2367228|gb|AAC76453.1| glycogen phosphorylase [Escherichia coli K12]
--- CLUSTER 1054 ---
>gi|1574194|gb|AAC23009.1| NAD(P) transhydrogenase, subunit alpha (pntA) [Haemophilus influenzae Rd]
>gi|1787887|gb|AAC74675.1| pyridine nucleotide transhydrogenase, alpha subunit [Escherichia coli K12]
--- CLUSTER 1055 ---
>gi|1574195|gb|AAC23010.1| NAD(P) transhydrogenase, subunit beta (pntB) [Haemophilus influenzae Rd]
>gi|1787886|gb|AAC74674.1| pyridine nucleotide transhydrogenase, beta subunit [Escherichia coli K12]
--- CLUSTER 1056 ---
>gi|1574198|gb|AAC23013.1| acyl carrier protein phosphodiesterase (acpD) [Haemophilus influenzae Rd]
>gi|1787680|gb|AAC74494.1| acyl carrier protein phosphodiesterase [Escherichia coli K12]
--- CLUSTER 1057 --- SPLIT INTO 1779 1780
>gi|1574200|gb|AAC23015.1| zinc protease, putative [Haemophilus influenzae Rd]
>gi|1787770|gb|AAC74567.1| putative peptidase [Escherichia coli K12]
>gi|1789946|gb|AAC76552.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1058 ---
>gi|1574200|gb|AAC23015.1| zinc protease, putative [Haemophilus influenzae Rd]
>gi|2367164|gb|AAC75860.1| protease III [Escherichia coli K12]
--- CLUSTER 1059 ---
>gi|1574202|gb|AAC23016.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787771|gb|AAC74568.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1060 ---
>gi|1574204|gb|AAC23018.1| desulfoviridin gamma subunit, putative [Haemophilus influenzae Rd]
>gi|1787204|gb|AAC74055.1| putative sulfite reductase (EC 1.8.-.-) [Escherichia coli K12]
--- CLUSTER 1061 ---
>gi|1574205|gb|AAC23019.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787606|gb|AAC74426.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1062 ---
>gi|1574206|gb|AAC23020.1| killing protein (kicB) [Haemophilus influenzae Rd]
>gi|1787152|gb|AAC74008.1| mukF protein (killing factor KICB) [Escherichia coli K12]
--- CLUSTER 1063 ---
>gi|1574207|gb|AAC23021.1| killing protein suppressor (kicA) [Haemophilus influenzae Rd]
>gi|1787153|gb|AAC74009.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1064 ---
>gi|1574208|gb|AAC23022.1| cell division protein (mukB) [Haemophilus influenzae Rd]
>gi|1787154|gb|AAC74010.1| kinesin-like cell division protein involved in chromosome partitioning [Escherichia coli K12]
--- CLUSTER 1065 ---
>gi|1574211|gb|AAC23023.1| exodeoxyribonuclease I (sbcB) [Haemophilus influenzae Rd]
>gi|1788321|gb|AAC75072.1| exonuclease I, 3' --> 5' specific; deoxyribophosphodiesterase [Escherichia coli K12]
--- CLUSTER 1066 ---
>gi|1574215|gb|AAC23027.1| phosphate ABC transporter, permease protein (pstC) [Haemophilus influenzae Rd]
>gi|1790164|gb|AAC76750.1| high-affinity phosphate-specific transport system, cytoplasmic membrane component [Escherichia coli K12]
--- CLUSTER 1067 ---
>gi|1574216|gb|AAC23028.1| phosphate ABC transporter, periplasmic-binding protein (pstS) [Haemophilus influenzae Rd]
>gi|2367271|gb|AAC76751.1| high-affinity phosphate-specific transport system; periplasmic phosphate-binding protein [Escherichia coli K12]
--- CLUSTER 1068 ---
>gi|1574224|gb|AAC23036.1| indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase (trpC) [Haemophilus influenzae Rd]
>gi|1787516|gb|AAC74344.1| N-(5-phosphoribosyl)anthranilate isomerase and indole-3-glycerolphosphate synthetase [Escherichia coli K12]
--- CLUSTER 1069 ---
>gi|1574226|gb|AAC23039.1| modification methylase (hindIIIM) [Haemophilus influenzae Rd]
>gi|1789662|gb|AAC76294.1| putative methyltransferase [Escherichia coli K12]
--- CLUSTER 1070 ---
>gi|1574227|gb|AAC23041.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789267|gb|AAC75938.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1071 ---
>gi|1574233|gb|AAC23044.1| DNA polymerase III, chi subunit (holC) [Haemophilus influenzae Rd]
>gi|1790709|gb|AAC77216.1| DNA polymerase III, chi subunit [Escherichia coli K12]
--- CLUSTER 1072 ---
>gi|1574235|gb|AAC23046.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787520|gb|AAC74348.1| putative enzymes [Escherichia coli K12]
--- CLUSTER 1073 ---
>gi|1574236|gb|AAC23047.1| dihydroorotate dehydrogenase (pyrD) [Haemophilus influenzae Rd]
>gi|1787177|gb|AAC74031.1| dihydro-orotate dehydrogenase [Escherichia coli K12]
--- CLUSTER 1074 ---
>gi|1786824|gb|AAC73708.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787640|gb|AAC74458.1| putative filament protein [Escherichia coli K12]
--- CLUSTER 1075 --- SPLIT INTO 1781 1782
>gi|1574260|gb|AAC23063.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787594|gb|AAC74415.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787640|gb|AAC74458.1| putative filament protein [Escherichia coli K12]
--- CLUSTER 1076 ---
>gi|1574267|gb|AAC23076.1| phosphoribosylaminoimidazole synthetase (purM) [Haemophilus influenzae Rd]
>gi|1788845|gb|AAC75552.1| phosphoribosylaminoimidazole synthetase = AIR synthetase [Escherichia coli K12]
--- CLUSTER 1077 ---
>gi|1574269|gb|AAC23078.1| tryptophan synthase beta subunit (trpB) [Haemophilus influenzae Rd]
>gi|1787515|gb|AAC74343.1| tryptophan synthase, beta protein [Escherichia coli K12]
--- CLUSTER 1078 ---
>gi|1574270|gb|AAC23079.1| tryptophan synthase alpha subunit (trpA) [Haemophilus influenzae Rd]
>gi|1787514|gb|AAC74342.1| tryptophan synthase, alpha protein [Escherichia coli K12]
--- CLUSTER 1079 ---
>gi|1574271|gb|AAC23080.1| usg-1 protein (usg1) [Haemophilus influenzae Rd]
>gi|1788658|gb|AAC75379.1| putative PTS system enzyme II A component [Escherichia coli K12]
--- CLUSTER 1080 ---
>gi|1574272|gb|AAC23081.1| transcriptional regulator, putative [Haemophilus influenzae Rd]
>gi|1786688|gb|AAC73583.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1081 ---
>gi|1574273|gb|AAC23082.1| cold shock-like protein (cspD) [Haemophilus influenzae Rd]
>gi|1786841|gb|AAC73724.1| cold shock protein [Escherichia coli K12]
>gi|1787107|gb|AAC73967.1| cold shock protein [Escherichia coli K12]
>gi|2367112|gb|AAC74074.1| cold shock-like protein [Escherichia coli K12]
>gi|2367114|gb|AAC74075.1| homolog of Salmonella cold shock protein [Escherichia coli K12]
>gi|1787834|gb|AAC74625.1| cold shock-like protein [Escherichia coli K12]
>gi|1787839|gb|AAC74630.1| cold shock protein; may affect transcription [Escherichia coli K12]
>gi|1787840|gb|AAC74631.1| cold shock protein [Escherichia coli K12]
>gi|1788126|gb|AAC74893.1| cold shock protein [Escherichia coli K12]
>gi|1789979|gb|AAC76580.1| cold shock protein 7.4, transcriptional activator of hns [Escherichia coli K12]
--- CLUSTER 1082 ---
>gi|3212221|gb|AAC23083.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788113|gb|AAC74881.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1083 ---
>gi|1574275|gb|AAC23085.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789156|gb|AAC75834.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1084 ---
>gi|1574276|gb|AAC23086.1| exodeoxyribonuclease, small subunit (xseB) [Haemophilus influenzae Rd]
>gi|1786624|gb|AAC73525.1| exonuclease VII, small subunit [Escherichia coli K12]
--- CLUSTER 1085 ---
>gi|1574279|gb|AAC23089.1| stringent starvation protein B (sspB) [Haemophilus influenzae Rd]
>gi|1789623|gb|AAC76260.1| stringent starvation protein B [Escherichia coli K12]
--- CLUSTER 1086 ---
>gi|1574282|gb|AAC23092.1| ribosomal protein S9 (rpS9) [Haemophilus influenzae Rd]
>gi|1789625|gb|AAC76262.1| 30S ribosomal subunit protein S9 [Escherichia coli K12]
--- CLUSTER 1087 ---
>gi|1574283|gb|AAC23093.1| ribosomal protein L13 (rpL13) [Haemophilus influenzae Rd]
>gi|1789626|gb|AAC76263.1| 50S ribosomal subunit protein L13 [Escherichia coli K12]
--- CLUSTER 1088 ---
>gi|1574284|gb|AAC23094.1| 5,10 methylenetetrahydrofolate reductase (metF) [Haemophilus influenzae Rd]
>gi|1790377|gb|AAC76923.1| 5,10-methylenetetrahydrofolate reductase [Escherichia coli K12]
--- CLUSTER 1089 ---
>gi|1574295|gb|AAC23096.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787427|gb|AAC74263.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1090 ---
>gi|1574286|gb|AAC23097.1| GTP cyclohydrolase I (folE) [Haemophilus influenzae Rd]
>gi|1788476|gb|AAC75214.1| GTP cyclohydrolase I [Escherichia coli K12]
--- CLUSTER 1091 ---
>gi|1574287|gb|AAC23098.1| molybdopterin biosynthesis protein (moeA) [Haemophilus influenzae Rd]
>gi|1787049|gb|AAC73914.1| molybdopterin biosynthesis [Escherichia coli K12]
--- CLUSTER 1092 ---
>gi|1574289|gb|AAC23100.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787501|gb|AAC74330.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1093 ---
>gi|1574290|gb|AAC23105.1| H. influenzae predicted coding region HI1452 [Haemophilus influenzae Rd]
>gi|1787100|gb|AAC73961.1| putative surface protein [Escherichia coli K12]
--- CLUSTER 1094 ---
>gi|1574293|gb|AAC23103.1| peptide methionine sulfoxide reductase (msrA) [Haemophilus influenzae Rd]
>gi|1788077|gb|AAC74848.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1095 ---
>gi|1574293|gb|AAC23103.1| peptide methionine sulfoxide reductase (msrA) [Haemophilus influenzae Rd]
>gi|1790665|gb|AAC77176.1| peptide methionine sulfoxide reductase [Escherichia coli K12]
--- CLUSTER 1096 ---
>gi|1574312|gb|AAC23119.1| iron chelatin ABC transporter, permease protein, putative [Haemophilus influenzae Rd]
>gi|1786347|gb|AAC73264.1| hydroxamate-dependent iron uptake, cytoplasmic membrane component [Escherichia coli K12]
>gi|1786804|gb|AAC73690.1| ferric enterobactin transport protein [Escherichia coli K12]
>gi|1786805|gb|AAC73691.1| ferric enterobactin (enterochelin) transport [Escherichia coli K12]
>gi|1788004|gb|AAC74781.1| vitamin B12 transport permease protein [Escherichia coli K12]
>gi|1790740|gb|AAC77244.1| citrate-dependent iron transport, membrane-bound protein [Escherichia coli K12]
>gi|1790741|gb|AAC77245.1| citrate-dependent iron(III) transport protein, cytosolic [Escherichia coli K12]
--- CLUSTER 1097 ---
>gi|1574314|gb|AAC23121.1| molybdenum transport system protein (modD) [Haemophilus influenzae Rd]
>gi|1786299|gb|AAC73220.1| quinolinate phosphoribosyltransferase [Escherichia coli K12]
--- CLUSTER 1098 ---
>gi|3212227|gb|AAC23124.1| DNA-binding protein (ner) [Haemophilus influenzae Rd]
>gi|1789579|gb|AAC76220.1| regulatory factor of maltose metabolism; similar to Ner repressor protein of phage Mu [Escherichia coli K12]
--- CLUSTER 1099 ---
>gi|1574361|gb|AAC23162.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787398|gb|AAC74236.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1100 ---
>gi|1574373|gb|AAC23170.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787399|gb|AAC74237.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1101 ---
>gi|1574371|gb|AAC23176.1| glutamate permease (gltS) [Haemophilus influenzae Rd]
>gi|1790085|gb|AAC76677.1| glutamate transport [Escherichia coli K12]
--- CLUSTER 1102 ---
>gi|1574372|gb|AAC23177.1| ribosomal protein S6 modification protein (rimK) [Haemophilus influenzae Rd]
>gi|1787076|gb|AAC73939.1| ribosomal protein S6 modification protein [Escherichia coli K12]
--- CLUSTER 1103 ---
>gi|1574372|gb|AAC23177.1| ribosomal protein S6 modification protein (rimK) [Haemophilus influenzae Rd]
>gi|1789316|gb|AAC75984.1| glutathione synthetase [Escherichia coli K12]
--- CLUSTER 1104 ---
>gi|1574377|gb|AAC23183.1| beta-ketoacyl-ACP synthase I (fabB) [Haemophilus influenzae Rd]
>gi|1787337|gb|AAC74179.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Escherichia coli K12]
>gi|1788663|gb|AAC75383.1| 3-oxoacyl-[acyl-carrier-protein] synthase I [Escherichia coli K12]
--- CLUSTER 1105 ---
>gi|1574378|gb|AAC23185.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788664|gb|AAC75384.1| putative peptidase [Escherichia coli K12]
--- CLUSTER 1106 ---
>gi|1574388|gb|AAC23186.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788664|gb|AAC75384.1| putative peptidase [Escherichia coli K12]
--- CLUSTER 1107 ---
>gi|1574387|gb|AAC23184.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788664|gb|AAC75384.1| putative peptidase [Escherichia coli K12]
--- CLUSTER 1108 ---
>gi|1574384|gb|AAC23192.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788063|gb|AAC74835.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1109 ---
>gi|1786231|gb|AAC73157.1| putative NAD(P)H oxidoreductase [Escherichia coli K12]
>gi|1789750|gb|AAC76376.1| putative NAD(P)H oxidoreductase [Escherichia coli K12]
--- CLUSTER 1110 ---
>gi|1786231|gb|AAC73157.1| putative NAD(P)H oxidoreductase [Escherichia coli K12]
>gi|1787129|gb|AAC73987.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1111 ---
>gi|1574386|gb|AAC23194.1| NAD(P)H oxidoreductase, putative [Haemophilus influenzae Rd]
>gi|1787129|gb|AAC73987.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1112 ---
>gi|1574392|gb|AAC23197.1| phospho-2-dehydro-3-deoxyheptonate aldolase (phenylalanine repressible) (aroG) [Haemophilus influenzae Rd]
>gi|1786969|gb|AAC73841.1| 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, phenylalanine repressible) [Escherichia coli K12]
>gi|1787996|gb|AAC74774.1| 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, tryptophan repressible) [Escherichia coli K12]
>gi|1788953|gb|AAC75650.1| 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, tyrosine repressible) [Escherichia coli K12]
--- CLUSTER 1113 ---
>gi|1786994|gb|AAC73864.1| biotin biosynthesis; reaction prior to pimeloyl CoA [Escherichia coli K12]
>gi|1787798|gb|AAC74592.1| putative enzyme [Escherichia coli K12]
--- CLUSTER 1114 ---
>gi|1574396|gb|AAC23201.1| biotin synthesis protein, putative [Haemophilus influenzae Rd]
>gi|1786994|gb|AAC73864.1| biotin biosynthesis; reaction prior to pimeloyl CoA [Escherichia coli K12]
--- CLUSTER 1115 ---
>gi|1574397|gb|AAC23202.1| 8-amino-7-oxononanoate synthase (bioF) [Haemophilus influenzae Rd]
>gi|1786993|gb|AAC73863.1| 8-amino-7-oxononanoate synthase [Escherichia coli K12]
>gi|1790046|gb|AAC76641.1| 2-amino-3-ketobutyrate CoA ligase (glycine acetyltransferase) [Escherichia coli K12]
--- CLUSTER 1116 ---
>gi|1574401|gb|AAC23206.1| 2-dehydro-3-deoxyphosphooctonate aldolase (kdsA) [Haemophilus influenzae Rd]
>gi|1787466|gb|AAC74299.1| 2-dehydro-3-deoxyphosphooctulonate aldolase [Escherichia coli K12]
--- CLUSTER 1117 ---
>gi|1574402|gb|AAC23207.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787465|gb|AAC74298.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1118 --- SPLIT INTO 1783 1784
>gi|1574404|gb|AAC23209.1| peptide chain release factor 1 (prfA) [Haemophilus influenzae Rd]
>gi|1786431|gb|AAC73340.1| probable peptide chain release factor [Escherichia coli K12]
>gi|1787462|gb|AAC74295.1| peptide chain release factor RF-1 [Escherichia coli K12]
>gi|2367172|gb|AAC75929.1| peptide chain release factor RF-2 [Escherichia coli K12]
--- CLUSTER 1119 ---
>gi|1574415|gb|AAC23212.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788666|gb|AAC75386.1| putative transporting ATPase [Escherichia coli K12]
--- CLUSTER 1120 ---
>gi|1574410|gb|AAC23216.1| pyruvate kinase, type II (pykA) [Haemophilus influenzae Rd]
>gi|1787965|gb|AAC74746.1| pyruvate kinase I (formerly F), fructose stimulated [Escherichia coli K12]
>gi|1788160|gb|AAC74924.1| pyruvate kinase II, glucose stimulated [Escherichia coli K12]
--- CLUSTER 1121 ---
>gi|1574411|gb|AAC23217.1| replicative DNA helicase (dnaB) [Haemophilus influenzae Rd]
>gi|1790486|gb|AAC77022.1| replicative DNA helicase; part of primosome [Escherichia coli K12]
--- CLUSTER 1122 ---
>gi|1574412|gb|AAC23218.1| alanine racemase, biosynthetic (alr) [Haemophilus influenzae Rd]
>gi|1787439|gb|AAC74274.1| alanine racemase 2, catabolic [Escherichia coli K12]
>gi|1790487|gb|AAC77023.1| alanine racemase 1 [Escherichia coli K12]
--- CLUSTER 1123 ---
>gi|1574413|gb|AAC23219.1| glucose-6-phosphate isomerase (pgi) [Haemophilus influenzae Rd]
>gi|1790457|gb|AAC76995.1| glucosephosphate isomerase [Escherichia coli K12]
--- CLUSTER 1124 ---
>gi|1787353|gb|AAC74194.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787929|gb|AAC74713.1| putative outer membrane protein [Escherichia coli K12]
--- CLUSTER 1125 ---
>gi|1787929|gb|AAC74713.1| putative outer membrane protein [Escherichia coli K12]
>gi|1788852|gb|AAC75558.1| putative outer membrane lipoprotein [Escherichia coli K12]
--- CLUSTER 1126 ---
>gi|1574423|gb|AAC23228.1| 15 kDa peptidoglycan-associated lipoprotein (lpp) [Haemophilus influenzae Rd]
>gi|1787929|gb|AAC74713.1| putative outer membrane protein [Escherichia coli K12]
--- CLUSTER 1127 ---
>gi|1574431|gb|AAC23230.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788183|gb|AAC74945.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1128 ---
>gi|1574424|gb|AAC23231.1| arginyl-tRNA synthetase (argS) [Haemophilus influenzae Rd]
>gi|1788184|gb|AAC74946.1| arginine tRNA synthetase [Escherichia coli K12]
--- CLUSTER 1129 --- SPLIT INTO 1785 1786
>gi|1574425|gb|AAC23232.1| acetolactate synthase III small subunit (ilvH) [Haemophilus influenzae Rd]
>gi|1786266|gb|AAC73189.1| acetolactate synthase III, valine sensitive, small subunit [Escherichia coli K12]
>gi|1790103|gb|AAC76693.1| acetolactate synthase I, valine sensitive, small subunit [Escherichia coli K12]
--- CLUSTER 1130 ---
>gi|1574428|gb|AAC23235.1| DNA-binding protein H-NS (hns) [Haemophilus influenzae Rd]
>gi|1787489|gb|AAC74319.1| DNA-binding protein HLP-II (HU, BH2, HD, NS); pleiotropic regulator [Escherichia coli K12]
>gi|1789023|gb|AAC75716.1| DNA-binding protein; H-NS-like protein; chaperone activity; RNA splicing? [Escherichia coli K12]
--- CLUSTER 1131 ---
>gi|1574434|gb|AAC23237.1| 3-phosphoshikimate-1-carboxyvinyltransferase (aroA) [Haemophilus influenzae Rd]
>gi|1787137|gb|AAC73994.1| 5-enolpyruvylshikimate-3-phosphate synthetase [Escherichia coli K12]
--- CLUSTER 1132 ---
>gi|1574436|gb|AAC23239.1| outer membrane lipoproteins carrier protein (lolA) [Haemophilus influenzae Rd]
>gi|1787118|gb|AAC73977.1| periplasmic protein effects translocation of lipoproteins from inner membrane to outer [Escherichia coli K12]
--- CLUSTER 1133 ---
>gi|1574440|gb|AAC23242.1| DNA repair protein (radA) [Haemophilus influenzae Rd]
>gi|1790850|gb|AAC77342.1| probable ATP-dependent protease [Escherichia coli K12]
--- CLUSTER 1134 ---
>gi|1574441|gb|AAC23243.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789434|gb|AAC76090.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1135 ---
>gi|1789360|gb|AAC76023.1| low-affinity phosphate transport [Escherichia coli K12]
>gi|1789907|gb|AAC76518.1| low-affinity phosphate transport [Escherichia coli K12]
--- CLUSTER 1136 ---
>gi|1574446|gb|AAC23248.1| phosphate permease, putative [Haemophilus influenzae Rd]
>gi|1789360|gb|AAC76023.1| low-affinity phosphate transport [Escherichia coli K12]
--- CLUSTER 1137 ---
>gi|1574447|gb|AAC23249.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789435|gb|AAC76091.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1138 ---
>gi|1574449|gb|AAC23251.1| hemM protein (hemM) [Haemophilus influenzae Rd]
>gi|1787460|gb|AAC74293.1| an enzyme in main pathway of synthesis of 5-aminolevulinate, possibly glutamyl-tRNA dehydrogenase [Escherichia coli K12]
--- CLUSTER 1139 ---
>gi|1574450|gb|AAC23252.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787459|gb|AAC74292.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1140 ---
>gi|1574451|gb|AAC23253.1| phosphoribosylpyrophosphate synthetase (prsA) [Haemophilus influenzae Rd]
>gi|1787458|gb|AAC74291.1| phosphoribosylpyrophosphate synthetase [Escherichia coli K12]
--- CLUSTER 1141 ---
>gi|1574452|gb|AAC23254.1| tyrosyl tRNA synthetase (tyrS) [Haemophilus influenzae Rd]
>gi|1787925|gb|AAC74709.1| tyrosine tRNA synthetase [Escherichia coli K12]
--- CLUSTER 1142 ---
>gi|3212235|gb|AAC23255.1| sugar fermentation stimulation protein (sfsA) [Haemophilus influenzae Rd]
>gi|1786340|gb|AAC73257.1| probable regulator for maltose metabolism [Escherichia coli K12]
--- CLUSTER 1143 ---
>gi|2367126|gb|AAC75048.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790477|gb|AAC77014.1| DNA-damage-inducible protein F [Escherichia coli K12]
--- CLUSTER 1144 ---
>gi|1574453|gb|AAC23256.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1787953|gb|AAC74735.1| putative transport protein [Escherichia coli K12]
>gi|2367126|gb|AAC75048.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1145 ---
>gi|1574454|gb|AAC23257.1| riboflavin synthase, alpha chain (ribE) [Haemophilus influenzae Rd]
>gi|1787952|gb|AAC74734.1| riboflavin synthase, alpha chain [Escherichia coli K12]
--- CLUSTER 1146 ---
>gi|1574460|gb|AAC23262.1| aminopeptidase N (pepN) [Haemophilus influenzae Rd]
>gi|1787163|gb|AAC74018.1| aminopeptidase N [Escherichia coli K12]
--- CLUSTER 1147 ---
>gi|1574461|gb|AAC23263.1| phosphoribosylaminoimidazole carboxylase, catalytic subunit (purE) [Haemophilus influenzae Rd]
>gi|1786734|gb|AAC73625.1| phosphoribosylaminoimidazole carboxylase = AIR carboxylase, catalytic subunit [Escherichia coli K12]
--- CLUSTER 1148 ---
>gi|1574462|gb|AAC23264.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit (purK) [Haemophilus influenzae Rd]
>gi|1786733|gb|AAC73624.1| phosphoribosylaminoimidazole carboxylase = AIR carboxylase, CO(2)-fixing subunit [Escherichia coli K12]
>gi|1788155|gb|AAC74919.1| phosphoribosylglycinamide formyltransferase 2 [Escherichia coli K12]
--- CLUSTER 1149 ---
>gi|1574463|gb|AAC23265.1| aspartate aminotransferase (aspC) [Haemophilus influenzae Rd]
>gi|1787159|gb|AAC74014.1| aspartate aminotransferase [Escherichia coli K12]
>gi|1790488|gb|AAC77024.1| tyrosine aminotransferase, tyrosine repressible [Escherichia coli K12]
--- CLUSTER 1150 ---
>gi|1786867|gb|AAC73748.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790515|gb|AAD13461.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1151 ---
>gi|1786864|gb|AAC73745.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1786867|gb|AAC73748.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1152 ---
>gi|1574466|gb|AAC23273.1| H. influenzae predicted coding region HI1625 [Haemophilus influenzae Rd]
>gi|1786864|gb|AAC73745.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1153 ---
>gi|1574474|gb|AAC23274.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788111|gb|AAC74879.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1154 ---
>gi|1574475|gb|AAC23275.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789628|gb|AAC76265.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1155 ---
>gi|1786252|gb|AAC73176.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788458|gb|AAC75197.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788656|gb|AAC75377.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789384|gb|AAC76045.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789481|gb|AAC76130.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1156 ---
>gi|1574476|gb|AAC23276.1| dedA protein, putative [Haemophilus influenzae Rd]
>gi|1788656|gb|AAC75377.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1157 ---
>gi|1574477|gb|AAC23277.1| ribosomal protein L25 (rpL25) [Haemophilus influenzae Rd]
>gi|1788512|gb|AAC75246.1| 50S ribosomal subunit protein L25 [Escherichia coli K12]
--- CLUSTER 1158 ---
>gi|1574479|gb|AAC23278.1| adenylosuccinate synthetase (purA) [Haemophilus influenzae Rd]
>gi|1790620|gb|AAC77134.1| adenylosuccinate synthetase [Escherichia coli K12]
--- CLUSTER 1159 ---
>gi|1574480|gb|AAC23279.1| 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (dapD) [Haemophilus influenzae Rd]
>gi|1786362|gb|AAC73277.1| 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [Escherichia coli K12]
--- CLUSTER 1160 ---
>gi|1574482|gb|AAC23281.1| phosphoenolpyruvate carboxylase (ppc) [Haemophilus influenzae Rd]
>gi|1790393|gb|AAC76938.1| phosphoenolpyruvate carboxylase [Escherichia coli K12]
--- CLUSTER 1161 ---
>gi|1574484|gb|AAC23282.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787581|gb|AAC74403.1| putative EC 2.1 enzymes [Escherichia coli K12]
--- CLUSTER 1162 ---
>gi|1574491|gb|AAC23290.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788482|gb|AAC75219.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1163 ---
>gi|1574492|gb|AAC23291.1| pseudouridylate synthase I (truA) [Haemophilus influenzae Rd]
>gi|1788657|gb|AAC75378.1| pseudouridylate synthase I [Escherichia coli K12]
--- CLUSTER 1164 ---
>gi|1574493|gb|AAC23292.1| fructose-1,6-bisphosphatase (fbp) [Haemophilus influenzae Rd]
>gi|1790679|gb|AAC77189.1| fructose-bisphosphatase [Escherichia coli K12]
--- CLUSTER 1165 ---
>gi|1574498|gb|AAC23296.1| D-lactate dehydrogenase (dld) [Haemophilus influenzae Rd]
>gi|1788454|gb|AAC75194.1| D-lactate dehydrogenase, FAD protein, NADH independent [Escherichia coli K12]
--- CLUSTER 1166 ---
>gi|1574503|gb|AAC23298.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789535|gb|AAC76180.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1167 ---
>gi|1574504|gb|AAC23299.1| antigen [Haemophilus influenzae Rd]
>gi|1789537|gb|AAC76181.1| putative glycosylase [Escherichia coli K12]
--- CLUSTER 1168 ---
>gi|1574505|gb|AAC23300.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789538|gb|AAC76182.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1169 ---
>gi|1789540|gb|AAC76184.1| putative periplasmic protein [Escherichia coli K12]
>gi|1790836|gb|AAC77329.1| hyperosmotically inducible periplasmic protein [Escherichia coli K12]
--- CLUSTER 1170 ---
>gi|1574507|gb|AAC23302.1| hemolysin, putative [Haemophilus influenzae Rd]
>gi|1789540|gb|AAC76184.1| putative periplasmic protein [Escherichia coli K12]
--- CLUSTER 1171 ---
>gi|1574509|gb|AAC23305.1| ribonucleoside-diphosphate reductase, alpha chain (nrdA) [Haemophilus influenzae Rd]
>gi|2367133|gb|AAC75294.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Escherichia coli K12]
>gi|1789030|gb|AAC75722.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli K12]
--- CLUSTER 1172 ---
>gi|1788567|gb|AAC75295.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Escherichia coli K12]
>gi|1789031|gb|AAC75723.1| ribonucleoside-diphosphate reductase 2, beta chain, frag [Escherichia coli K12]
--- CLUSTER 1173 ---
>gi|1574510|gb|AAC23306.1| ribonucleoside diphosphate reductase, beta chain (nrdB) [Haemophilus influenzae Rd]
>gi|1788567|gb|AAC75295.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Escherichia coli K12]
--- CLUSTER 1174 ---
>gi|1574512|gb|AAC23308.1| 2-oxoglutarate dehydrogenase E1 component (sucA) [Haemophilus influenzae Rd]
>gi|1786945|gb|AAC73820.1| 2-oxoglutarate dehydrogenase (decarboxylase component) [Escherichia coli K12]
--- CLUSTER 1175 ---
>gi|1574513|gb|AAC23309.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787158|gb|AAC74013.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1176 ---
>gi|1574517|gb|AAC23311.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787157|gb|AAC74012.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1177 ---
>gi|1574516|gb|AAC23313.1| H. influenzae predicted coding region HI1665 [Haemophilus influenzae Rd]
>gi|1787157|gb|AAC74012.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1178 ---
>gi|1574515|gb|AAC23312.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787155|gb|AAC74011.1| putative amidase [Escherichia coli K12]
--- CLUSTER 1179 ---
>gi|1574519|gb|AAC23314.1| tail specific protease (prc) [Haemophilus influenzae Rd]
>gi|1788134|gb|AAC74900.1| carboxy-terminal protease for penicillin-binding protein 3 [Escherichia coli K12]
--- CLUSTER 1180 ---
>gi|1574520|gb|AAC23315.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788135|gb|AAC74901.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1181 ---
>gi|1574521|gb|AAC23316.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787183|gb|AAC74036.1| paraquat-inducible protein A [Escherichia coli K12]
>gi|1788137|gb|AAC74903.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1182 --- SPLIT INTO 1787 1788
>gi|1574522|gb|AAC23317.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787184|gb|AAC74037.1| paraquat-inducible protein B [Escherichia coli K12]
>gi|1788138|gb|AAC74904.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1183 ---
>gi|1574523|gb|AAC23318.1| molybdopterin converting factor, subunit 2 (moaE) [Haemophilus influenzae Rd]
>gi|1787003|gb|AAC73872.1| molybdopterin converting factor, subunit 2 [Escherichia coli K12]
--- CLUSTER 1184 ---
>gi|1574524|gb|AAC23319.1| molybdopterin converting factor, subunit 1 (moaD) [Haemophilus influenzae Rd]
>gi|1787002|gb|AAC73871.1| molybdopterin biosynthesis [Escherichia coli K12]
--- CLUSTER 1185 ---
>gi|1574525|gb|AAC23320.1| molybdenum cofactor biosynthesis protein C (moaC) [Haemophilus influenzae Rd]
>gi|1787001|gb|AAC73870.1| molybdopterin biosynthesis, protein C [Escherichia coli K12]
--- CLUSTER 1186 ---
>gi|1574526|gb|AAC23321.1| molybdenum cofactor biosynthesis protein A (moaA) [Haemophilus influenzae Rd]
>gi|1786999|gb|AAC73868.1| molybdopterin biosynthesis, protein A [Escherichia coli K12]
--- CLUSTER 1187 ---
>gi|1574527|gb|AAC23322.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790654|gb|AAC77166.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1188 ---
>gi|1574530|gb|AAC23324.1| kpsF protein (kpsF) [Haemophilus influenzae Rd]
>gi|1789060|gb|AAC75750.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789588|gb|AAC76229.1| putative isomerase [Escherichia coli K12]
--- CLUSTER 1189 ---
>gi|1574531|gb|AAC23325.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|2367202|gb|AAC76230.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1190 ---
>gi|1574532|gb|AAC23326.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1787194|gb|AAC74046.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789757|gb|AAC76383.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1191 ---
>gi|1574533|gb|AAC23327.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787198|gb|AAC74050.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1192 ---
>gi|1574536|gb|AAC23330.1| iron-sulfur cluster binding protein [Haemophilus influenzae Rd]
>gi|1787915|gb|AAC74700.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1193 ---
>gi|1574539|gb|AAC23333.1| nitrogen fixation protein (rnfG) [Haemophilus influenzae Rd]
>gi|1787918|gb|AAC74703.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1194 ---
>gi|1574546|gb|AAC23339.1| molybdenum ABC transporter, periplasmic-binding protein (modA) [Haemophilus influenzae Rd]
>gi|1786979|gb|AAC73850.1| molybdate-binding periplasmic protein; permease [Escherichia coli K12]
--- CLUSTER 1195 ---
>gi|1574547|gb|AAC23340.1| molybdenum transport protein (modE) [Haemophilus influenzae Rd]
>gi|1786976|gb|AAC73848.1| molybdate uptake regulatory protein [Escherichia coli K12]
--- CLUSTER 1196 ---
>gi|1574551|gb|AAC23344.1| lipopolysaccharide biosynthesis protein [Haemophilus influenzae Rd]
>gi|1790058|gb|AAC76652.1| UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6- D-galactosyltransferase [Escherichia coli K12]
--- CLUSTER 1197 ---
>gi|1574551|gb|AAC23344.1| lipopolysaccharide biosynthesis protein [Haemophilus influenzae Rd]
>gi|1788357|gb|AAC75105.1| putative colanic acid biosynthesis glycosyl transferase [Escherichia coli K12]
--- CLUSTER 1198 ---
>gi|1574555|gb|AAC23347.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787150|gb|AAC74006.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1199 ---
>gi|1574556|gb|AAC23348.1| 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase (metE) [Haemophilus influenzae Rd]
>gi|2367304|gb|AAC76832.1| tetrahydropteroyltriglutamate methyltransferase [Escherichia coli K12]
--- CLUSTER 1200 ---
>gi|1574557|gb|AAC23349.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1574558|gb|AAC23350.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790712|gb|AAC77218.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790713|gb|AAC77219.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1201 --- SPLIT INTO 1789 1790
>gi|1574559|gb|AAC23351.1| aminopeptidase A/I (pepA) [Haemophilus influenzae Rd]
>gi|1788872|gb|AAC75576.1| putative peptidase [Escherichia coli K12]
>gi|1790710|gb|AAC77217.1| aminopeptidase A/I [Escherichia coli K12]
--- CLUSTER 1202 --- SPLIT INTO 1791 1792
>gi|1574560|gb|AAC23352.1| high-affinity choline transport protein (betT) [Haemophilus influenzae Rd]
>gi|1786224|gb|AAC73151.1| probable carnitine transporter [Escherichia coli K12]
>gi|1786506|gb|AAC73417.1| high-affinity choline transport [Escherichia coli K12]
>gi|1788102|gb|AAC74871.1| putative transport protein [Escherichia coli K12]
--- CLUSTER 1203 ---
>gi|1787817|gb|AAC74609.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789401|gb|AAC76060.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1204 ---
>gi|1574564|gb|AAC23355.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789401|gb|AAC76060.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1205 ---
>gi|1574569|gb|AAC23359.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790605|gb|AAC77121.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1206 ---
>gi|1574570|gb|AAC23360.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790606|gb|AAC77122.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1207 ---
>gi|1574571|gb|AAC23361.1| undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase (rfe), putative [Haemophilus influenzae Rd]
>gi|1790218|gb|AAC76789.1| UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase; synthesis of enterobacterial common antigen (ECA) [Escherichia coli K12]
--- CLUSTER 1208 ---
>gi|1574572|gb|AAC23362.1| uridylyl transferase (glnD) [Haemophilus influenzae Rd]
>gi|1786363|gb|AAC73278.1| protein PII; uridylyltransferase acts on regulator of glnA [Escherichia coli K12]
--- CLUSTER 1209 ---
>gi|1574580|gb|AAC23370.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786310|gb|AAC73230.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1210 ---
>gi|1574583|gb|AAC23373.1| argininosuccinate synthetase (argG) [Haemophilus influenzae Rd]
>gi|1789563|gb|AAC76205.1| argininosuccinate synthetase [Escherichia coli K12]
--- CLUSTER 1211 ---
>gi|1574584|gb|AAC23374.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788736|gb|AAC75451.1| putative transport system permease [Escherichia coli K12]
--- CLUSTER 1212 ---
>gi|1574585|gb|AAC23375.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786931|gb|AAC73807.1| putative lactam utilization protein [Escherichia coli K12]
--- CLUSTER 1213 ---
>gi|1574586|gb|AAC23376.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786930|gb|AAC73806.1| putative carboxylase [Escherichia coli K12]
--- CLUSTER 1214 ---
>gi|1574587|gb|AAC23377.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786929|gb|AAC73805.1| putative carboxylase [Escherichia coli K12]
--- CLUSTER 1215 ---
>gi|1574596|gb|AAC23382.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789038|gb|AAC75729.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1216 ---
>gi|1574598|gb|AAC23385.1| L-lactate dehydrogenase (lctD) [Haemophilus influenzae Rd]
>gi|1790033|gb|AAC76629.1| L-lactate dehydrogenase [Escherichia coli K12]
--- CLUSTER 1217 ---
>gi|3212239|gb|AAC23386.1| glutamate racemase (murI) [Haemophilus influenzae Rd]
>gi|1790406|gb|AAC76949.1| glutamate racemase, required for biosynthesis of D-glutamate and peptidoglycan [Escherichia coli K12]
--- CLUSTER 1218 ---
>gi|1574602|gb|AAC23389.1| DNA-directed RNA polymerase, omega chain (rpoZ) [Haemophilus influenzae Rd]
>gi|1790081|gb|AAC76673.1| RNA polymerase, omega subunit [Escherichia coli K12]
--- CLUSTER 1219 ---
>gi|1574603|gb|AAC23390.1| guanylate kinase (gmk) [Haemophilus influenzae Rd]
>gi|1790080|gb|AAC76672.1| guanylate kinase [Escherichia coli K12]
--- CLUSTER 1220 ---
>gi|1786186|gb|AAC73116.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788734|gb|AAC75449.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1221 ---
>gi|1786198|gb|AAC73127.1| IS186 hypothetical protein [Escherichia coli K12]
>gi|1786796|gb|AAC73683.1| IS186 hypothetical protein [Escherichia coli K12]
>gi|1788738|gb|AAC75453.1| IS186 hypothetical protein [Escherichia coli K12]
--- CLUSTER 1222 ---
>gi|1786200|gb|AAC73129.1| Gef protein interferes with membrane function when in excess [Escherichia coli K12]
>gi|1787845|gb|AAC74635.1| polypeptide destructive to membrane potential [Escherichia coli K12]
--- CLUSTER 1223 ---
>gi|1786203|gb|AAC73132.1| IS1 protein InsB [Escherichia coli K12]
>gi|1786459|gb|AAC73367.1| IS1 protein InsB [Escherichia coli K12]
>gi|1786470|gb|AAC73377.1| IS1 protein InsB [Escherichia coli K12]
>gi|1787223|gb|AAC74073.1| IS1 protein InsB [Escherichia coli K12]
>gi|1788203|gb|AAC74963.1| IS1 protein InsB [Escherichia coli K12]
>gi|1789853|gb|AAC76470.1| IS1 protein InsB [Escherichia coli K12]
--- CLUSTER 1224 ---
>gi|1786204|gb|AAC73133.1| IS1 protein InsA [Escherichia coli K12]
>gi|1786460|gb|AAC73368.1| IS1 protein InsA [Escherichia coli K12]
>gi|1786471|gb|AAC73378.1| IS1 protein InsA [Escherichia coli K12]
>gi|1788204|gb|AAC74964.1| IS1 protein InsA [Escherichia coli K12]
>gi|1789852|gb|AAC76469.1| IS1 protein InsA [Escherichia coli K12]
>gi|1790747|gb|AAC77250.1| IS1 protein InsA [Escherichia coli K12]
--- CLUSTER 1225 ---
>gi|1786213|gb|AAC73141.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1786871|gb|AAC73752.1| putative tRNA synthetase [Escherichia coli K12]
>gi|1788486|gb|AAC75223.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1226 ---
>gi|1786219|gb|AAC73146.1| possible synthesis of cofactor for carnitine racemase and dehydratase [Escherichia coli K12]
>gi|1787667|gb|AAC74482.1| putative transferase [Escherichia coli K12]
>gi|1789673|gb|AAC76304.1| putative transferase [Escherichia coli K12]
--- CLUSTER 1227 ---
>gi|1786222|gb|AAC73149.1| l-carnitine dehydratase [Escherichia coli K12]
>gi|1788714|gb|AAC75430.1| putative enzyme [Escherichia coli K12]
>gi|1788717|gb|AAC75433.1| putative enzyme [Escherichia coli K12]
--- CLUSTER 1228 --- SPLIT INTO 1793 1794
>gi|1786223|gb|AAC73150.1| probable carnitine operon oxidoreductase [Escherichia coli K12]
>gi|1787986|gb|AAC74765.1| putative oxidoreductase [Escherichia coli K12]
>gi|1790630|gb|AAC77144.1| putative acyl coenzyme A dehydrogenase [Escherichia coli K12]
--- CLUSTER 1229 ---
>gi|1786225|gb|AAC73152.1| probable flavoprotein subunit, carnitine metabolism [Escherichia coli K12]
>gi|2367123|gb|AAC74767.1| putative transport protein [Escherichia coli K12]
--- CLUSTER 1230 ---
>gi|1786226|gb|AAC73153.1| probable flavoprotein subunit, carnitine metabolism [Escherichia coli K12]
>gi|1787990|gb|AAC74768.1| putative flavoprotein [Escherichia coli K12]
>gi|1789128|gb|AAC75811.1| putative flavoprotein [Escherichia coli K12]
--- CLUSTER 1231 ---
>gi|1786227|gb|AAC73154.1| flavoprotein; electron transport [Escherichia coli K12]
>gi|1787991|gb|AAC74769.1| flavoprotein; probably electron transport [Escherichia coli K12]
>gi|1789125|gb|AAC75808.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1232 ---
>gi|1786228|gb|AAC73155.1| putative ferredoxin [Escherichia coli K12]
>gi|1787992|gb|AAC74770.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789126|gb|AAC75809.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1233 ---
>gi|1786256|gb|AAC73180.1| putative transport protein [Escherichia coli K12]
>gi|1786650|gb|AAC73548.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1234 ---
>gi|1788120|gb|AAC74887.1| PTS enzyme IIAB, mannose-specific [Escherichia coli K12]
>gi|1789521|gb|AAC76167.1| PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA) [Escherichia coli K12]
>gi|1789527|gb|AAC76172.1| PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 1 (EIIB-AGA) [Escherichia coli K12]
--- CLUSTER 1235 ---
>gi|1786321|gb|AAC73240.1| putative PTS enzyme II B component [Escherichia coli K12]
>gi|1788120|gb|AAC74887.1| PTS enzyme IIAB, mannose-specific [Escherichia coli K12]
--- CLUSTER 1236 ---
>gi|1786322|gb|AAC73241.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787260|gb|AAC74108.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1237 --- SPLIT INTO 1795 1796
>gi|1786324|gb|AAC73243.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788577|gb|AAC75304.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788643|gb|AAC75365.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789816|gb|AAC76436.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790795|gb|AAC77294.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790796|gb|AAC77295.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1238 --- SPLIT INTO 1797 1798
>gi|1786332|gb|AAC73250.1| probable outer membrane porin protein involved in fimbrial assembly [Escherichia coli K12]
>gi|1786744|gb|AAC73634.1| putative outer membrane protein, export function [Escherichia coli K12]
>gi|1786937|gb|AAC73812.1| putative outer membrane protein [Escherichia coli K12]
>gi|1787172|gb|AAC74026.1| putative outer membrane protein [Escherichia coli K12]
>gi|1787782|gb|AAC74578.1| putative outer membrane protein [Escherichia coli K12]
>gi|1788427|gb|AAC75170.1| putative outer membrane protein [Escherichia coli K12]
>gi|1788678|gb|AAC75397.1| putative outer membrane protein [Escherichia coli K12]
>gi|1788679|gb|AAC75398.1| putative outer membrane protein [Escherichia coli K12]
>gi|2367188|gb|AAC76082.1| putative membrane protein [Escherichia coli K12]
>gi|1789533|gb|AAC76178.1| putative outer membrane protein [Escherichia coli K12]
>gi|1789610|gb|AAC76248.1| putative outer membrane protein [Escherichia coli K12]
>gi|1790772|gb|AAC77273.1| outer membrane protein; export and assembly of type 1 fimbriae, interrupted [Escherichia coli K12]
--- CLUSTER 1239 ---
>gi|1786333|gb|AAC73251.1| probable pilin chaperone similar to PapD [Escherichia coli K12]
>gi|1786743|gb|AAC73633.1| putative chaperone [Escherichia coli K12]
>gi|1786936|gb|AAC73811.1| putative chaperone [Escherichia coli K12]
>gi|1787171|gb|AAC74025.1| putative chaperone [Escherichia coli K12]
>gi|1787176|gb|AAC74030.1| putative chaperone [Escherichia coli K12]
>gi|1788428|gb|AAC75171.1| putative chaperone [Escherichia coli K12]
>gi|1788677|gb|AAC75396.1| putative chaperone [Escherichia coli K12]
>gi|1789426|gb|AAC76083.1| putative membrane protein [Escherichia coli K12]
>gi|1789532|gb|AAC76177.1| putative chaperone [Escherichia coli K12]
>gi|1789609|gb|AAC76247.1| putative chaperone [Escherichia coli K12]
>gi|1790771|gb|AAC77272.1| periplasmic chaperone, required for type 1 fimbriae [Escherichia coli K12]
--- CLUSTER 1240 ---
>gi|1787876|gb|AAC74664.1| putative chloride channel [Escherichia coli K12]
>gi|1788733|gb|AAC75448.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1241 ---
>gi|1786350|gb|AAC73266.1| putative channel transporter [Escherichia coli K12]
>gi|1787876|gb|AAC74664.1| putative chloride channel [Escherichia coli K12]
--- CLUSTER 1242 --- SPLIT INTO 1799 1800 1801 1802
>gi|1786400|gb|AAC73312.1| putative aldose reductase (EC 1.1.1.21) [Escherichia coli K12]
>gi|1786621|gb|AAC73522.1| putative NAD(P)H-dependent xylose reductase [Escherichia coli K12]
>gi|1787674|gb|AAC74488.1| putative dehydrogenase [Escherichia coli K12]
>gi|1787936|gb|AAC74719.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788070|gb|AAC74841.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788081|gb|AAC74851.1| putative an aldehyde reductase [Escherichia coli K12]
>gi|1789199|gb|AAC75873.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789375|gb|AAC76037.1| putative reductase [Escherichia coli K12]
>gi|1789387|gb|AAC76048.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1243 ---
>gi|1786412|gb|AAC73323.1| putative EC 3.5. amidase-type enzyme [Escherichia coli K12]
>gi|1786844|gb|AAC73727.1| putative amidase [Escherichia coli K12]
--- CLUSTER 1244 ---
>gi|1786423|gb|AAC73333.1| flagellar biosynthesis [Escherichia coli K12]
>gi|1788187|gb|AAC74949.1| flagellar biosynthesis; possible export of flagellar proteins [Escherichia coli K12]
--- CLUSTER 1245 ---
>gi|1786424|gb|AAC73334.1| putative motility protein [Escherichia coli K12]
>gi|1788198|gb|AAC74959.1| enables flagellar motor rotation, linking torque machinery to cell wall [Escherichia coli K12]
--- CLUSTER 1246 ---
>gi|1786425|gb|AAC73335.1| damage-inducible protein P; putative tRNA synthetase [Escherichia coli K12]
>gi|1787432|gb|AAC74268.1| SOS mutagenesis and repair [Escherichia coli K12]
--- CLUSTER 1247 ---
>gi|1786439|gb|AAC73348.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788315|gb|AAC75066.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788999|gb|AAC75694.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1248 ---
>gi|1786440|gb|AAC73349.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1786461|gb|AAC73369.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788314|gb|AAC75065.1| putative structural protein [Escherichia coli K12]
>gi|1788998|gb|AAC75693.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1249 ---
>gi|1786442|gb|AAC73351.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788996|gb|AAC75691.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1250 ---
>gi|1786444|gb|AAC73353.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788990|gb|AAC75685.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1251 ---
>gi|1786445|gb|AAC73354.1| orf, hypothetical protein [Escherichia coli K12]
>gi|2367145|gb|AAC75684.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1252 ---
>gi|1786445|gb|AAC73354.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788988|gb|AAC75682.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1253 ---
>gi|1786446|gb|AAC73355.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788987|gb|AAC75681.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1254 --- SPLIT INTO 1803 1804
>gi|1786447|gb|AAC73356.1| putative GTP-binding protein [Escherichia coli K12]
>gi|1788308|gb|AAC75060.1| putative histone [Escherichia coli K12]
>gi|1788986|gb|AAC75680.1| putative GTP-binding protein [Escherichia coli K12]
--- CLUSTER 1255 ---
>gi|1786449|gb|AAC73358.1| IS911 hypothetical protein, variant (IS911A) [Escherichia coli K12]
>gi|1790735|gb|AAC77239.1| IS911 hypothetical protein (IS911B) [Escherichia coli K12]
--- CLUSTER 1256 ---
>gi|1786450|gb|AAC73359.1| IS30 transposase [Escherichia coli K12]
>gi|1787671|gb|AAC74486.1| IS30 transposase [Escherichia coli K12]
>gi|1790736|gb|AAC77240.1| IS30 transposase [Escherichia coli K12]
--- CLUSTER 1257 ---
>gi|1786453|gb|AAC73362.1| IS5 transposase [Escherichia coli K12]
>gi|1786764|gb|AAC73653.1| IS5 transposase [Escherichia coli K12]
>gi|1786877|gb|AAC73757.1| IS5 transposase [Escherichia coli K12]
>gi|1787592|gb|AAC74413.1| IS5 transposase [Escherichia coli K12]
>gi|1787634|gb|AAC74452.1| IS5 transposase [Escherichia coli K12]
>gi|1788303|gb|AAC75055.1| IS5 transposase [Escherichia coli K12]
>gi|1788342|gb|AAC75091.1| IS5 transposase [Escherichia coli K12]
>gi|1788518|gb|AAC75252.1| IS5 transposase [Escherichia coli K12]
>gi|1789355|gb|AAC76018.1| IS5 transposase [Escherichia coli K12]
>gi|1789612|gb|AAC76250.1| IS5 transposase [Escherichia coli K12]
>gi|1789921|gb|AAC76530.1| IS5 transposase [Escherichia coli K12]
--- CLUSTER 1258 ---
>gi|1786456|gb|AAC73364.1| putative enzyme [Escherichia coli K12]
>gi|1790450|gb|AAC76989.1| B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase, repressor of metE and metF [Escherichia coli K12]
--- CLUSTER 1259 ---
>gi|1786466|gb|AAC73373.1| putative permease [Escherichia coli K12]
>gi|1787902|gb|AAC74688.1| glucuronide permease [Escherichia coli K12]
>gi|2367257|gb|AAC76681.1| putative permease [Escherichia coli K12]
>gi|2367321|gb|AAC76873.1| putative permease [Escherichia coli K12]
>gi|2367322|gb|AAC76874.1| putative permease [Escherichia coli K12]
>gi|1790561|gb|AAC77081.1| melibiose permease II [Escherichia coli K12]
--- CLUSTER 1260 ---
>gi|1786473|gb|AAC73380.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788979|gb|AAC75674.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1261 ---
>gi|1786480|gb|AAC73389.1| putative xanthine dehydrogenase (EC 1.1.1.20) [Escherichia coli K12]
>gi|1789232|gb|AAC75906.1| putative dehydrogenase [Escherichia coli K12]
--- CLUSTER 1262 ---
>gi|1789232|gb|AAC75906.1| putative dehydrogenase [Escherichia coli K12]
>gi|1789246|gb|AAC75919.1| putative dehydrogenase [Escherichia coli K12]
--- CLUSTER 1263 ---
>gi|1786478|gb|AAC73387.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789230|gb|AAC75904.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789246|gb|AAC75919.1| putative dehydrogenase [Escherichia coli K12]
--- CLUSTER 1264 ---
>gi|1786482|gb|AAC73392.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1786485|gb|AAC73395.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1265 ---
>gi|2367106|gb|AAC73397.1| putative regulator [Escherichia coli K12]
>gi|1789212|gb|AAC75885.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1266 --- SPLIT INTO 1805 1806
>gi|1786488|gb|AAC73400.1| attaching and effacing protein, pathogenesis factor [Escherichia coli K12]
>gi|1787472|gb|AAC74304.1| putative factor [Escherichia coli K12]
>gi|1788288|gb|AAC75042.1| putative factor [Escherichia coli K12]
--- CLUSTER 1267 ---
>gi|1786489|gb|AAC73401.1| putative factor [Escherichia coli K12]
>gi|1786571|gb|AAC73476.1| putative factor [Escherichia coli K12]
>gi|1786752|gb|AAC73641.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787264|gb|AAC74112.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788404|gb|AAC75149.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1268 ---
>gi|1788000|gb|AAC74777.1| orf, hypothetical protein [Escherichia coli K12]
>gi|2367237|gb|AAC76550.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1269 --- SPLIT INTO 1807 1808
>gi|1786507|gb|AAC73418.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1786584|gb|AAC73488.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1786662|gb|AAC73559.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787055|gb|AAC73920.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787056|gb|AAC73921.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787262|gb|AAC74110.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787410|gb|AAC74247.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787415|gb|AAC74252.1| putative proteases [Escherichia coli K12]
>gi|1787541|gb|AAC74367.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787603|gb|AAC74423.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787765|gb|AAC74562.1| putative enzyme [Escherichia coli K12]
>gi|1787766|gb|AAC74563.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787802|gb|AAC74595.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787816|gb|AAC74608.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788085|gb|AAC74855.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788086|gb|AAC74856.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788095|gb|AAC74864.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788118|gb|AAC74885.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788266|gb|AAC75022.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788381|gb|AAC75128.1| putative sensor-type protein [Escherichia coli K12]
>gi|1788502|gb|AAC75237.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788739|gb|AAC75454.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788849|gb|AAC75556.1| putative cytochrome C-type biogenesis protein [Escherichia coli K12]
>gi|1788956|gb|AAC75653.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789650|gb|AAC76284.1| orf, hypothetical protein [Escherichia coli K12]
>gi|2367237|gb|AAC76550.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789948|gb|AAC76554.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790496|gb|AAC77031.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1270 ---
>gi|1786514|gb|AAC73424.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1786730|gb|AAC73621.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1271 ---
>gi|1786525|gb|AAC73434.1| putative phosphonomutase 2 [Escherichia coli K12]
>gi|1790445|gb|AAC76985.1| isocitrate lyase [Escherichia coli K12]
--- CLUSTER 1272 ---
>gi|1786527|gb|AAC73436.1| putative citrate synthase; propionate metabolism? [Escherichia coli K12]
>gi|1786939|gb|AAC73814.1| citrate synthase [Escherichia coli K12]
--- CLUSTER 1273 --- SPLIT INTO 1809 1810
>gi|1786539|gb|AAC73447.1| beta-D-galactosidase [Escherichia coli K12]
>gi|1787903|gb|AAC74689.1| beta-D-glucuronidase [Escherichia coli K12]
>gi|1789457|gb|AAC76111.1| evolved beta-D-galactosidase, alpha subunit; cryptic gene [Escherichia coli K12]
--- CLUSTER 1274 ---
>gi|1786543|gb|AAC73450.1| 3-(3-hydroxyphenyl)propionate hydroxylase [Escherichia coli K12]
>gi|1786883|gb|AAC73763.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789273|gb|AAC75944.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789274|gb|AAC75945.1| 2-octaprenyl-6-methoxyphenol--> 2-octaprenyl-6-methoxy-1, 4-benzoquinone [Escherichia coli K12]
--- CLUSTER 1275 ---
>gi|1786553|gb|AAC73460.1| putative alpha helix chain [Escherichia coli K12]
>gi|1788422|gb|AAC75166.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1276 ---
>gi|1786557|gb|AAC73463.1| IS2 hypothetical protein [Escherichia coli K12]
>gi|1787670|gb|AAC74485.1| IS2 hypothetical protein [Escherichia coli K12]
>gi|1788306|gb|AAC75058.1| IS2 hypothetical protein [Escherichia coli K12]
>gi|1789225|gb|AAC75900.1| IS2 hypothetical protein [Escherichia coli K12]
>gi|1789423|gb|AAC76080.1| IS2 hypothetical protein [Escherichia coli K12]
>gi|1790723|gb|AAC77228.1| IS2 hypothetical protein [Escherichia coli K12]
--- CLUSTER 1277 ---
>gi|1786558|gb|AAC73464.1| IS2 hypothetical protein [Escherichia coli K12]
>gi|1787669|gb|AAC74484.1| IS2 hypothetical protein [Escherichia coli K12]
>gi|1787860|gb|AAC74650.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788305|gb|AAC75057.1| IS2 hypothetical protein [Escherichia coli K12]
>gi|1789224|gb|AAC75899.1| IS2 hypothetical protein [Escherichia coli K12]
>gi|1789424|gb|AAC76081.1| IS2 hypothetical protein [Escherichia coli K12]
>gi|1790724|gb|AAC77229.1| IS2 hypothetical protein [Escherichia coli K12]
--- CLUSTER 1278 ---
>gi|1786574|gb|AAC73479.1| putative enzyme [Escherichia coli K12]
>gi|1788770|gb|AAC75483.1| putative beta-lactamase [Escherichia coli K12]
--- CLUSTER 1279 ---
>gi|1786574|gb|AAC73479.1| putative enzyme [Escherichia coli K12]
>gi|1790593|gb|AAC77110.1| beta-lactamase; penicillin resistance [Escherichia coli K12]
--- CLUSTER 1280 ---
>gi|1786591|gb|AAC73495.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787675|gb|AAC74489.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1281 ---
>gi|1787568|gb|AAC74391.1| putative polysaccharide hydrolase [Escherichia coli K12]
>gi|1790687|gb|AAC77196.1| trehalase 6-P hydrolase [Escherichia coli K12]
--- CLUSTER 1282 ---
>gi|1786604|gb|AAC73506.1| maltodextrin glucosidase [Escherichia coli K12]
>gi|1790687|gb|AAC77196.1| trehalase 6-P hydrolase [Escherichia coli K12]
--- CLUSTER 1283 ---
>gi|1786626|gb|AAC73527.1| 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis [Escherichia coli K12]
>gi|1789543|gb|AAC76187.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1284 ---
>gi|1786631|gb|AAC73531.1| protoheme IX farnesyltransferase (haeme O biosynthesis) [Escherichia coli K12]
>gi|1790473|gb|AAC77010.1| 4-hydroxybenzoate-octaprenyltransferase [Escherichia coli K12]
--- CLUSTER 1285 ---
>gi|1786665|gb|AAC73562.1| haemolysin expression modulating protein [Escherichia coli K12]
>gi|1787912|gb|AAC74697.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1286 ---
>gi|1786669|gb|AAC73566.1| acrAB operon repressor [Escherichia coli K12]
>gi|1789664|gb|AAC76296.1| putative transcriptional regulator [Escherichia coli K12]
--- CLUSTER 1287 ---
>gi|1786693|gb|AAC73587.1| putative glutaminase [Escherichia coli K12]
>gi|1787804|gb|AAC74597.1| putative glutaminase [Escherichia coli K12]
--- CLUSTER 1288 --- SPLIT INTO 1811 1812
>gi|1786706|gb|AAC73599.1| rhsD protein in rhs element [Escherichia coli K12]
>gi|1786708|gb|AAC73601.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1786917|gb|AAC73794.1| rhsC protein in rhs element [Escherichia coli K12]
>gi|1786921|gb|AAC73797.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787728|gb|AAC74538.1| rhsE protein in rhs element [Escherichia coli K12]
>gi|1789894|gb|AAC76507.1| rhsB protein in rhs element [Escherichia coli K12]
>gi|1790020|gb|AAC76617.1| rhsA protein in rhs element [Escherichia coli K12]
>gi|2367250|gb|AAC76619.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1289 ---
>gi|1786707|gb|AAC73600.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789895|gb|AAC76508.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1290 ---
>gi|1786722|gb|AAC73614.1| putative hydrolase [Escherichia coli K12]
>gi|1789237|gb|AAC75911.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1291 ---
>gi|1787780|gb|AAC74576.1| putative fimbrial-like protein [Escherichia coli K12]
>gi|1790774|gb|AAC77275.1| fimbrial morphology [Escherichia coli K12]
--- CLUSTER 1292 ---
>gi|1786742|gb|AAC73632.1| putative fimbrial-like protein [Escherichia coli K12]
>gi|1786746|gb|AAC73636.1| putative fimbrial-like protein [Escherichia coli K12]
>gi|1786938|gb|AAC73813.1| putative fimbrial-like protein [Escherichia coli K12]
>gi|1787170|gb|AAC74024.1| putative fimbrial-like protein [Escherichia coli K12]
>gi|1787174|gb|AAC74028.1| putative fimbrial-like protein [Escherichia coli K12]
>gi|1787175|gb|AAC74029.1| putative fimbrial-like protein [Escherichia coli K12]
>gi|1787781|gb|AAC74577.1| putative fimbrial-like protein [Escherichia coli K12]
>gi|1788674|gb|AAC75393.1| putative fimbrial-like protein [Escherichia coli K12]
>gi|1788680|gb|AAC75399.1| putative fimbrial-like protein [Escherichia coli K12]
>gi|1789422|gb|AAC76079.1| putative fimbrial-like protein [Escherichia coli K12]
>gi|1789531|gb|AAC76176.1| putative fimbrial-like protein [Escherichia coli K12]
>gi|1790769|gb|AAC77270.1| major type 1 subunit fimbrin (pilin) [Escherichia coli K12]
>gi|1790770|gb|AAC77271.1| fimbrial protein [Escherichia coli K12]
>gi|1790773|gb|AAC77274.1| fimbrial morphology [Escherichia coli K12]
>gi|1790774|gb|AAC77275.1| fimbrial morphology [Escherichia coli K12]
--- CLUSTER 1293 ---
>gi|1786745|gb|AAC73635.1| involved in fimbrial asembly [Escherichia coli K12]
>gi|1787173|gb|AAC74027.1| homolog of Salmonella FimH protein [Escherichia coli K12]
>gi|1789534|gb|AAC76179.1| putative fimbrial protein [Escherichia coli K12]
--- CLUSTER 1294 ---
>gi|1786755|gb|AAC73644.1| methylviologen resistance [Escherichia coli K12]
>gi|1787883|gb|AAC74671.1| possible chaperone [Escherichia coli K12]
>gi|1787884|gb|AAC74672.1| possible chaperone [Escherichia coli K12]
>gi|1790591|gb|AAC77108.1| suppresses groEL, may be chaperone [Escherichia coli K12]
--- CLUSTER 1295 ---
>gi|1786757|gb|AAC73646.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1786990|gb|AAC73860.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1296 ---
>gi|1786767|gb|AAC73655.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787838|gb|AAC74629.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1297 ---
>gi|1786768|gb|AAC73656.1| bacteriophage lambda lysozyme homolog [Escherichia coli K12]
>gi|1787836|gb|AAC74627.1| putative lysozyme [Escherichia coli K12]
--- CLUSTER 1298 ---
>gi|1786769|gb|AAC73657.1| bacteriophage lambda endopeptidase homolog [Escherichia coli K12]
>gi|1787625|gb|AAC74444.1| putative Rac prophage endopeptidase [Escherichia coli K12]
--- CLUSTER 1299 ---
>gi|1786771|gb|AAC73659.1| putative an envelop protein [Escherichia coli K12]
>gi|1787408|gb|AAC74245.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787831|gb|AAC74622.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1300 ---
>gi|1786773|gb|AAC73661.1| bacteriophage DNA packaging protein [Escherichia coli K12]
>gi|1787830|gb|AAC74621.1| homolog of Qin prophage packaging protein NU1 [Escherichia coli K12]
--- CLUSTER 1301 --- SPLIT INTO 1813 1814 1815
>gi|1786774|gb|AAC73662.1| orf, hypothetical protein [Escherichia coli K12]
>gi|2367110|gb|AAC73664.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787402|gb|AAC74240.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787637|gb|AAC74455.1| orf, hypothetical protein [Escherichia coli K12]
>gi|2367120|gb|AAC74619.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788695|gb|AAC75412.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1302 ---
>gi|1786793|gb|AAC73680.1| orf, hypothetical protein [Escherichia coli K12]
>gi|2367342|gb|AAC77027.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1303 ---
>gi|1786815|gb|AAC73700.1| putative oxidoreductase [Escherichia coli K12]
>gi|1790381|gb|AAC76927.1| glycerol dehydrogenase, (NAD) [Escherichia coli K12]
--- CLUSTER 1304 ---
>gi|1786845|gb|AAC73728.1| orf, hypothetical protein [Escherichia coli K12]
>gi|2367310|gb|AAC76839.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1305 ---
>gi|1786865|gb|AAC73746.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1786868|gb|AAC73749.1| putative tRNA ligase [Escherichia coli K12]
--- CLUSTER 1306 ---
>gi|1786866|gb|AAC73747.1| putative enzyme of polynucleotide modification [Escherichia coli K12]
>gi|1786869|gb|AAC73750.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1307 ---
>gi|1786881|gb|AAC73761.1| putative ATP-binding protein in pho regulon [Escherichia coli K12]
>gi|1787257|gb|AAC74105.1| PhoB-dependent, ATP-binding pho regulon component; may be helicase; induced by P starvation [Escherichia coli K12]
--- CLUSTER 1308 ---
>gi|1786884|gb|AAC73764.1| putative RNA [Escherichia coli K12]
>gi|1786885|gb|AAC73765.1| putative RNA [Escherichia coli K12]
--- CLUSTER 1309 --- SPLIT INTO 1816 1817
>gi|1786923|gb|AAC73799.1| putative receptor protein [Escherichia coli K12]
>gi|1786924|gb|AAC73800.1| putative DNA ligase [Escherichia coli K12]
>gi|1787731|gb|AAC74540.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787732|gb|AAC74541.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787733|gb|AAC74542.1| putative receptor [Escherichia coli K12]
>gi|1789896|gb|AAC76509.1| putative receptor [Escherichia coli K12]
--- CLUSTER 1310 ---
>gi|1786927|gb|AAC73803.1| putative transport protein [Escherichia coli K12]
>gi|1787922|gb|AAC74706.1| putative transport protein [Escherichia coli K12]
>gi|1789911|gb|AAC76521.1| putative transport protein [Escherichia coli K12]
>gi|1790572|gb|AAC77091.1| putative peptide transporter [Escherichia coli K12]
--- CLUSTER 1311 ---
>gi|1786935|gb|AAC73810.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789427|gb|AAC76084.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1312 ---
>gi|1786966|gb|AAC73839.1| putative transport system permease protein [Escherichia coli K12]
>gi|1790349|gb|AAC76897.1| putative transport system permease protein [Escherichia coli K12]
--- CLUSTER 1313 ---
>gi|1787004|gb|AAC73873.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787005|gb|AAC73874.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1314 ---
>gi|1787007|gb|AAC73876.1| putative synthetase [Escherichia coli K12]
>gi|1787284|gb|AAC74130.1| putative synthase [Escherichia coli K12]
>gi|1787502|gb|AAC74331.1| cardiolipin synthase, a major membrane phospholipid; novobiocin sensitivity [Escherichia coli K12]
--- CLUSTER 1315 ---
>gi|1787021|gb|AAC73889.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787026|gb|AAC73893.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787355|gb|AAC74196.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789634|gb|AAC76270.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1316 ---
>gi|1787040|gb|AAC73906.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787356|gb|AAC74197.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787968|gb|AAC74748.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788299|gb|AAC75051.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1317 ---
>gi|1787046|gb|AAC73912.1| putative transaldolase [Escherichia coli K12]
>gi|1790382|gb|AAC76928.1| putative transaldolase [Escherichia coli K12]
--- CLUSTER 1318 ---
>gi|1787126|gb|AAC73984.1| putative transport [Escherichia coli K12]
>gi|1790788|gb|AAC77288.1| putative transport protein [Escherichia coli K12]
--- CLUSTER 1319 ---
>gi|1788840|gb|AAC75547.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789305|gb|AAC75973.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1320 ---
>gi|1787138|gb|AAC73995.1| putative heat shock protein [Escherichia coli K12]
>gi|1789305|gb|AAC75973.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1321 ---
>gi|1787166|gb|AAC74021.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787247|gb|AAC74097.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1322 ---
>gi|1787181|gb|AAC74034.1| putative oxidoreductase [Escherichia coli K12]
>gi|1787201|gb|AAC74053.1| putative oxidoreductase [Escherichia coli K12]
--- CLUSTER 1323 ---
>gi|1787206|gb|AAC74057.1| hydrogenase-1 small subunit [Escherichia coli K12]
>gi|1789371|gb|AAC76033.1| putative hydrogenase subunit [Escherichia coli K12]
--- CLUSTER 1324 --- SPLIT INTO 1818 1819
>gi|1787207|gb|AAC74058.1| hydrogenase-1 large subunit [Escherichia coli K12]
>gi|1788622|gb|AAC75346.1| NADH dehydrogenase I chain C, D [Escherichia coli K12]
>gi|1788832|gb|AAC75540.1| hydrogenase 4 subunit [Escherichia coli K12]
>gi|1789076|gb|AAC75763.1| large subunit of hydrogenase 3 (part of FHL complex) [Escherichia coli K12]
>gi|1789368|gb|AAC76030.1| probable large subunit, hydrogenase-2 [Escherichia coli K12]
--- CLUSTER 1325 ---
>gi|1787209|gb|AAC74060.1| processing of HyaA and HyaB proteins [Escherichia coli K12]
>gi|1789367|gb|AAC76029.1| probable processing element for hydrogenase-2 [Escherichia coli K12]
--- CLUSTER 1326 ---
>gi|1787215|gb|AAC74065.1| phosphoanhydride phosphorylase; pH 2.5 acid phosphatase; periplasmic [Escherichia coli K12]
>gi|1787237|gb|AAC74087.1| periplasmic glucose-1-phosphatase [Escherichia coli K12]
--- CLUSTER 1327 ---
>gi|1787216|gb|AAC74066.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788374|gb|AAC75121.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1328 ---
>gi|1787217|gb|AAC74067.1| putative phosphatase [Escherichia coli K12]
>gi|1788375|gb|AAC75122.1| probable protein-tyrosine-phosphatase [Escherichia coli K12]
--- CLUSTER 1329 ---
>gi|1787218|gb|AAC74068.1| putative function in exopolysaccharide production [Escherichia coli K12]
>gi|1788376|gb|AAC75123.1| putative polysaccharide export protein [Escherichia coli K12]
--- CLUSTER 1330 ---
>gi|1787219|gb|AAC74069.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790461|gb|AAC76999.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1331 ---
>gi|1787220|gb|AAC74070.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790460|gb|AAC76998.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1332 ---
>gi|1787221|gb|AAC74071.1| putative regulator [Escherichia coli K12]
>gi|1790459|gb|AAC76997.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1333 ---
>gi|1787246|gb|AAC74096.1| putative synthetase [Escherichia coli K12]
>gi|1788174|gb|AAC74937.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1334 ---
>gi|1787268|gb|AAC74115.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787269|gb|AAC74116.1| putative ribosomal protein [Escherichia coli K12]
--- CLUSTER 1335 ---
>gi|1787286|gb|AAC74132.1| periplasmic glucans biosynthesis protein [Escherichia coli K12]
>gi|1787693|gb|AAC74506.1| putative glycoprotein [Escherichia coli K12]
--- CLUSTER 1336 ---
>gi|1787296|gb|AAC74141.1| putative cytochrome [Escherichia coli K12]
>gi|1787687|gb|AAC74500.1| cytochrome b(561) [Escherichia coli K12]
>gi|1788286|gb|AAC75040.1| putative cytochrome [Escherichia coli K12]
--- CLUSTER 1337 ---
>gi|1787317|gb|AAC74161.1| flagellar biosynthesis, cell-proximal portion of basal-body rod [Escherichia coli K12]
>gi|1787318|gb|AAC74162.1| flagellar biosynthesis, cell-distal portion of basal-body rod [Escherichia coli K12]
--- CLUSTER 1338 ---
>gi|1787316|gb|AAC74160.1| flagellar biosynthesis, hook protein [Escherichia coli K12]
>gi|1787318|gb|AAC74162.1| flagellar biosynthesis, cell-distal portion of basal-body rod [Escherichia coli K12]
--- CLUSTER 1339 ---
>gi|1787328|gb|AAC74171.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789646|gb|AAC76280.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1340 ---
>gi|1787400|gb|AAC74238.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788697|gb|AAC75414.1| putative RNA polymerase beta [Escherichia coli K12]
--- CLUSTER 1341 ---
>gi|1787401|gb|AAC74239.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788696|gb|AAC75413.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1342 ---
>gi|1787404|gb|AAC74242.1| inversion of adjacent DNA; at locus of e14 element [Escherichia coli K12]
>gi|1787638|gb|AAC74456.1| putative transposon resolvase [Escherichia coli K12]
>gi|1787827|gb|AAC74618.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1343 ---
>gi|1787409|gb|AAC74246.1| putative transcriptional regulator [Escherichia coli K12]
>gi|1788448|gb|AAC75188.1| putative transcriptional regulator [Escherichia coli K12]
--- CLUSTER 1344 ---
>gi|1787445|gb|AAC74279.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788096|gb|AAC74865.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1345 ---
>gi|1787447|gb|AAC74281.1| trehalase, periplasmic [Escherichia coli K12]
>gi|1789936|gb|AAC76544.1| cytoplasmic trehalase [Escherichia coli K12]
--- CLUSTER 1346 ---
>gi|1787475|gb|AAC74307.1| nitrite extrusion protein [Escherichia coli K12]
>gi|1787743|gb|AAD13433.1| nitrite extrusion protein 2 [Escherichia coli K12]
--- CLUSTER 1347 ---
>gi|1787479|gb|AAC74310.1| nitrate reductase 1, delta subunit, assembly function [Escherichia coli K12]
>gi|1787739|gb|AAC74548.1| cryptic nitrate reductase 2, delta subunit, assembly function [Escherichia coli K12]
--- CLUSTER 1348 ---
>gi|1787480|gb|AAC74311.1| nitrate reductase 1, cytochrome b(NR), gamma subunit [Escherichia coli K12]
>gi|1787738|gb|AAC74547.1| cryptic nitrate reductase 2, gamma subunit [Escherichia coli K12]
--- CLUSTER 1349 ---
>gi|1787491|gb|AAC74321.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790729|gb|AAC77234.1| IS4 hypothetical protein [Escherichia coli K12]
--- CLUSTER 1350 ---
>gi|1787494|gb|AAC74324.1| putative channel protein [Escherichia coli K12]
>gi|1787809|gb|AAC74602.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1351 ---
>gi|1787494|gb|AAC74324.1| putative channel protein [Escherichia coli K12]
>gi|1789842|gb|AAC76459.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1352 ---
>gi|1787569|gb|AAC74392.1| putative transport periplasmic protein [Escherichia coli K12]
>gi|1789862|gb|AAC76478.1| sn-glycerol 3-phosphate transport system; periplasmic binding protein [Escherichia coli K12]
--- CLUSTER 1353 --- SPLIT INTO 1820 1821
>gi|1787574|gb|AAC74397.1| putative dehydrogenase [Escherichia coli K12]
>gi|1787911|gb|AAC74696.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789848|gb|AAC76465.1| putative regulator [Escherichia coli K12]
>gi|1790731|gb|AAC77236.1| putative dehydrogenase [Escherichia coli K12]
--- CLUSTER 1354 ---
>gi|1787574|gb|AAC74397.1| putative dehydrogenase [Escherichia coli K12]
>gi|2367190|gb|AAC76122.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1355 ---
>gi|1787861|gb|AAC74651.1| putative transposase [Escherichia coli K12]
>gi|1788246|gb|AAC75003.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1356 ---
>gi|1787607|gb|AAC74427.1| putative transposase [Escherichia coli K12]
>gi|1787861|gb|AAC74651.1| putative transposase [Escherichia coli K12]
--- CLUSTER 1357 ---
>gi|1787623|gb|AAC74442.1| putative DNA replication factor [Escherichia coli K12]
>gi|1790823|gb|AAC77317.1| chromosome replication; initiation and chain elongation [Escherichia coli K12]
--- CLUSTER 1358 ---
>gi|1787639|gb|AAC74457.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787826|gb|AAC74617.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1359 --- SPLIT INTO 1822 1823
>gi|1787690|gb|AAC74503.1| methyl-accepting chemotaxis protein III, ribose sensor receptor [Escherichia coli K12]
>gi|1788194|gb|AAC74955.1| methyl-accepting chemotaxis protein IV, peptide sensor receptor [Escherichia coli K12]
>gi|1788195|gb|AAC74956.1| methyl-accepting chemotaxis protein II, aspartate sensor receptor [Escherichia coli K12]
>gi|1789453|gb|AAC76107.1| aerotaxis sensor receptor, flavoprotein [Escherichia coli K12]
>gi|2367378|gb|AAC77311.1| methyl-accepting chemotaxis protein I, serine sensor receptor [Escherichia coli K12]
--- CLUSTER 1360 ---
>gi|1787769|gb|AAC74566.1| glutamate decarboxylase isozyme [Escherichia coli K12]
>gi|1789934|gb|AAC76542.1| glutamate decarboxylase isozyme [Escherichia coli K12]
--- CLUSTER 1361 ---
>gi|1787774|gb|AAC74570.1| putative enzyme [Escherichia coli K12]
>gi|2367292|gb|AAC76803.1| putative arylsulfatase regulator [Escherichia coli K12]
--- CLUSTER 1362 ---
>gi|1787779|gb|AAC74575.1| putative adhesin; similar to FimH protein [Escherichia coli K12]
>gi|1790775|gb|AAC77276.1| minor fimbrial subunit, D-mannose specific adhesin [Escherichia coli K12]
--- CLUSTER 1363 ---
>gi|1787791|gb|AAC74585.1| putative transcriptional regulator, sorC family [Escherichia coli K12]
>gi|1790748|gb|AAC77251.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1364 ---
>gi|1787823|gb|AAC74615.1| putative oxidoreductase [Escherichia coli K12]
>gi|1790028|gb|AAC76624.1| mannitol-1-phosphate dehydrogenase [Escherichia coli K12]
--- CLUSTER 1365 ---
>gi|1787800|gb|AAC74594.1| altronate oxidoreductase [Escherichia coli K12]
>gi|1787823|gb|AAC74615.1| putative oxidoreductase [Escherichia coli K12]
>gi|1788497|gb|AAC75233.1| putative oxidoreductase [Escherichia coli K12]
>gi|1790779|gb|AAC77279.1| D-mannonate oxidoreductase [Escherichia coli K12]
--- CLUSTER 1366 ---
>gi|1788269|gb|AAC75025.1| putative transmembrane subunit [Escherichia coli K12]
>gi|1790092|gb|AAC76683.1| putative permease transporter [Escherichia coli K12]
>gi|1790379|gb|AAC76925.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1367 ---
>gi|1787813|gb|AAC74606.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790379|gb|AAC76925.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1368 ---
>gi|1787818|gb|AAC74610.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789052|gb|AAC75742.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1369 ---
>gi|1787864|gb|AAC74653.1| starvation sensing protein [Escherichia coli K12]
>gi|2367262|gb|AAC76715.1| 2-oxo-3-deoxygalactonate 6-phosphate aldolase and galactonate dehydratase [Escherichia coli K12]
--- CLUSTER 1370 ---
>gi|1789150|gb|AAC75829.1| putative glucarate dehydratase [Escherichia coli K12]
>gi|1789151|gb|AAC75830.1| putative glucarate dehydratase [Escherichia coli K12]
--- CLUSTER 1371 ---
>gi|1787864|gb|AAC74653.1| starvation sensing protein [Escherichia coli K12]
>gi|1789151|gb|AAC75830.1| putative glucarate dehydratase [Escherichia coli K12]
--- CLUSTER 1372 ---
>gi|1787867|gb|AAC74656.1| spermidine N1-acetyltransferase [Escherichia coli K12]
>gi|1789849|gb|AAC76466.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1373 --- SPLIT INTO 1824 1825
>gi|1787897|gb|AAC74684.1| fumarase A = fumarate hydratase Class I; aerobic isozyme [Escherichia coli K12]
>gi|1789442|gb|AAC76097.1| L-tartrate dehydratase, subunit A [Escherichia coli K12]
>gi|1789443|gb|AAC76098.1| L-tartrate dehydratase, subunit B [Escherichia coli K12]
>gi|1790564|gb|AAC77083.1| fumarase B= fumarate hydratase Class I; anaerobic isozyme [Escherichia coli K12]
--- CLUSTER 1374 ---
>gi|1787933|gb|AAC74717.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789636|gb|AAC76272.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1375 ---
>gi|1787939|gb|AAC74722.1| N-ethylmaleimide reductase [Escherichia coli K12]
>gi|1789463|gb|AAC76116.1| putative NADPH dehydrogenase [Escherichia coli K12]
--- CLUSTER 1376 ---
>gi|1787967|gb|AAC74747.1| murein lipoprotein [Escherichia coli K12]
>gi|1789390|gb|AAC76050.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1377 ---
>gi|1787971|gb|AAC74751.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787973|gb|AAC74753.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1378 ---
>gi|1788015|gb|AAC74791.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790447|gb|AAC76987.1| regulator of acetyl CoA synthetase [Escherichia coli K12]
--- CLUSTER 1379 ---
>gi|1788029|gb|AAC74804.1| phospho-beta-glucosidase; cryptic [Escherichia coli K12]
>gi|1790115|gb|AAC76704.1| probable 6-phospho-beta-glucosidase [Escherichia coli K12]
>gi|1790560|gb|AAC77080.1| alpha-galactosidase [Escherichia coli K12]
--- CLUSTER 1380 ---
>gi|1788039|gb|AAC74813.1| periplasmic protein related to spheroblast formation [Escherichia coli K12]
>gi|2367331|gb|AAC76896.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1381 ---
>gi|1788047|gb|AAC74820.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788049|gb|AAC74822.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1382 ---
>gi|1788072|gb|AAC74843.1| putative aldolase [Escherichia coli K12]
>gi|1788412|gb|AAC75157.1| tagatose-bisphosphate aldolase 1 [Escherichia coli K12]
>gi|1789526|gb|AAC76171.1| tagatose-bisphosphate aldolase 2 [Escherichia coli K12]
--- CLUSTER 1383 ---
>gi|1788082|gb|AAC74852.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790010|gb|AAC76608.1| putative outer membrane protein [Escherichia coli K12]
--- CLUSTER 1384 ---
>gi|1788103|gb|AAC74872.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788888|gb|AAC75591.1| large terminal subunit of phenylpropionate dioxygenase [Escherichia coli K12]
--- CLUSTER 1385 --- SPLIT INTO 1826 1827
>gi|1788121|gb|AAC74888.1| PTS enzyme IIC, mannose-specific [Escherichia coli K12]
>gi|1789522|gb|AAC76168.1| PTS system N-acetylgalactosameine-specific IIC component 2 [Escherichia coli K12]
>gi|1789528|gb|AAC76173.1| PTS system N-acetylgalactosamine-specific IIC component 1 [Escherichia coli K12]
--- CLUSTER 1386 ---
>gi|1788122|gb|AAC74889.1| PTS enzyme IID, mannose-specific [Escherichia coli K12]
>gi|1789529|gb|AAC76174.1| PTS system, N-acetylglucosamine enzyme IID component 1 [Escherichia coli K12]
--- CLUSTER 1387 ---
>gi|1788169|gb|AAC74932.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790372|gb|AAC76919.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1388 ---
>gi|1788238|gb|AAC74996.1| putative transport system permease protein [Escherichia coli K12]
>gi|1788323|gb|AAC75074.1| putative transport system permease protein [Escherichia coli K12]
--- CLUSTER 1389 ---
>gi|1788351|gb|AAC75100.1| glucose-1-phosphate thymidylyltransferase [Escherichia coli K12]
>gi|1790224|gb|AAC76794.1| glucose-1-phosphate thymidylyltransferase [Escherichia coli K12]
--- CLUSTER 1390 ---
>gi|1788408|gb|AAC75153.1| PTS system galactitol-specific enzyme IIC [Escherichia coli K12]
>gi|1790758|gb|AAC77260.1| putative PTS system enzyme IIC component [Escherichia coli K12]
--- CLUSTER 1391 ---
>gi|1788411|gb|AAC75156.1| putative tagatose 6-phosphate kinase 1 [Escherichia coli K12]
>gi|1789520|gb|AAC76166.1| putative tagatose 6-phosphate kinase 2 [Escherichia coli K12]
--- CLUSTER 1392 ---
>gi|1788415|gb|AAC75159.1| putative nucleoside permease protein [Escherichia coli K12]
>gi|1788745|gb|AAC75459.1| xanthosine permease [Escherichia coli K12]
>gi|1789336|gb|AAC76001.1| transport of nucleosides, permease protein [Escherichia coli K12]
--- CLUSTER 1393 ---
>gi|1788434|gb|AAC75177.1| molybdate metabolism regulator, second fragment 2 [Escherichia coli K12]
>gi|1788436|gb|AAC75179.1| putative regulator [Escherichia coli K12]
--- CLUSTER 1394 ---
>gi|1788435|gb|AAC75178.1| molybdate metabolism regulator, third fragment [Escherichia coli K12]
>gi|1788436|gb|AAC75179.1| putative regulator [Escherichia coli K12]
--- CLUSTER 1395 ---
>gi|1788433|gb|AAC75176.1| molybdate metabolism regulator, first fragment [Escherichia coli K12]
>gi|1788436|gb|AAC75179.1| putative regulator [Escherichia coli K12]
--- CLUSTER 1396 ---
>gi|1788433|gb|AAC75176.1| molybdate metabolism regulator, first fragment [Escherichia coli K12]
>gi|1788760|gb|AAC75473.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1397 ---
>gi|1788446|gb|AAC75187.1| putative 2-component sensor protein [Escherichia coli K12]
>gi|1788723|gb|AAC75439.1| putative sensor protein [Escherichia coli K12]
--- CLUSTER 1398 ---
>gi|1788499|gb|AAC75234.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790812|gb|AAC77308.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1399 ---
>gi|1788517|gb|AAC75251.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789611|gb|AAC76249.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1400 ---
>gi|1788569|gb|AAC75297.1| pH-inducible protein involved in stress response [Escherichia coli K12]
>gi|1790060|gb|AAC76654.1| lipopolysaccharide core biosynthesis; phosphorylation of core heptose; attaches phosphate-containing substrate to LPS co [Escherichia coli K12]
--- CLUSTER 1401 ---
>gi|1788578|gb|AAC75305.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789514|gb|AAC76160.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1402 ---
>gi|1788587|gb|AAC75313.1| putative enzyme [Escherichia coli K12]
>gi|2367285|gb|AAC76796.1| putative regulator [Escherichia coli K12]
--- CLUSTER 1403 ---
>gi|1788601|gb|AAC75326.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789027|gb|AAC75719.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789485|gb|AAC76133.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1404 --- SPLIT INTO 1828 1829 1830
>gi|1788612|gb|AAC75336.1| NADH dehydrogenase I chain N [Escherichia coli K12]
>gi|1788613|gb|AAC75337.1| NADH dehydrogenase I chain M [Escherichia coli K12]
>gi|1788614|gb|AAC75338.1| NADH dehydrogenase I chain L [Escherichia coli K12]
>gi|1788827|gb|AAC75535.1| hydrogenase 4 membrane subunit [Escherichia coli K12]
>gi|1788829|gb|AAC75537.1| hydrogenase 4 membrane subunit [Escherichia coli K12]
>gi|1788831|gb|AAC75539.1| hydrogenase 4 membrane subunit [Escherichia coli K12]
>gi|2367154|gb|AAC75765.1| membrane-spanning protein of hydrogenase 3 (part of FHL complex) [Escherichia coli K12]
--- CLUSTER 1405 ---
>gi|1788618|gb|AAC75342.1| NADH dehydrogenase I chain H [Escherichia coli K12]
>gi|1788828|gb|AAC75536.1| hydrogenase 4 membrane subunit [Escherichia coli K12]
>gi|1789077|gb|AAC75764.1| membrane-spanning protein of hydrogenase 3 (part of FHL complex) [Escherichia coli K12]
--- CLUSTER 1406 ---
>gi|1788624|gb|AAC75347.1| NADH dehydrogenase I chain B [Escherichia coli K12]
>gi|1788834|gb|AAC75542.1| hydrogenase 4 Fe-S subunit [Escherichia coli K12]
>gi|1789074|gb|AAC75761.1| hydrogenase activity [Escherichia coli K12]
--- CLUSTER 1407 ---
>gi|1788675|gb|AAC75394.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788676|gb|AAC75395.1| putative fimbrial protein [Escherichia coli K12]
--- CLUSTER 1408 ---
>gi|1788690|gb|AAC75408.1| putative prophage Sf6-like integrase [Escherichia coli K12]
>gi|1788783|gb|AAC75495.1| putative prophage integrase [Escherichia coli K12]
>gi|1788974|gb|AAC75670.1| prophage CP4-57 integrase [Escherichia coli K12]
>gi|1790722|gb|AAC77227.1| prophage P4 integrase [Escherichia coli K12]
--- CLUSTER 1409 ---
>gi|1788727|gb|AAC75443.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790332|gb|AAC76880.1| frv operon protein [Escherichia coli K12]
>gi|2367373|gb|AAC77261.1| putative lyase/synthase [Escherichia coli K12]
--- CLUSTER 1410 ---
>gi|1788741|gb|AAC75455.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788742|gb|AAC75456.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1411 ---
>gi|1788765|gb|AAC75478.1| thiosulfate binding protein [Escherichia coli K12]
>gi|1790351|gb|AAC76899.1| periplasmic sulfate-binding protein [Escherichia coli K12]
--- CLUSTER 1412 ---
>gi|1788779|gb|AAC75491.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788799|gb|AAC75510.1| detox protein [Escherichia coli K12]
--- CLUSTER 1413 ---
>gi|1788835|gb|AAC75543.1| putative protein processing element [Escherichia coli K12]
>gi|1789073|gb|AAC75760.1| processing of large subunit (HycE) of hydrogenase 3 (part of the FHL complex) [Escherichia coli K12]
--- CLUSTER 1414 ---
>gi|1788893|gb|AAC75596.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789488|gb|AAC76136.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1415 ---
>gi|1788993|gb|AAC75688.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789917|gb|AAC76527.1| arsenical pump membrane protein [Escherichia coli K12]
--- CLUSTER 1416 ---
>gi|1788992|gb|AAC75687.1| putative pump protein [Escherichia coli K12]
>gi|1789917|gb|AAC76527.1| arsenical pump membrane protein [Escherichia coli K12]
--- CLUSTER 1417 ---
>gi|1789070|gb|AAC75758.1| 6-phospho-beta-glucosidase; cryptic [Escherichia coli K12]
>gi|2367174|gb|AAC75939.1| 6-phospho-beta-glucosidase A; cryptic [Escherichia coli K12]
>gi|2367270|gb|AAC76744.1| phospho-beta-glucosidase B; cryptic [Escherichia coli K12]
--- CLUSTER 1418 ---
>gi|1789081|gb|AAC75768.1| pleiotrophic effects on 3 hydrogenase isozymes [Escherichia coli K12]
>gi|1789365|gb|AAC76027.1| may modulate levels of hydrogenease-2 [Escherichia coli K12]
--- CLUSTER 1419 ---
>gi|1789083|gb|AAC75770.1| pleiotrophic effects on 3 hydrogenase isozymes [Escherichia coli K12]
>gi|1789364|gb|AAC76026.1| hydrogenase-2 operon protein: may effect maturation of large subunit of hydrogenase-2 [Escherichia coli K12]
--- CLUSTER 1420 ---
>gi|2367161|gb|AAC75817.1| putative transport protein [Escherichia coli K12]
>gi|1790306|gb|AAC76871.1| putative resistance protein (transport) [Escherichia coli K12]
--- CLUSTER 1421 ---
>gi|1789145|gb|AAC75824.1| probable growth inhibitor, PemK-like, autoregulated [Escherichia coli K12]
>gi|1790672|gb|AAC77182.1| probable growth inhibitor, PemK-like, autoregulated [Escherichia coli K12]
--- CLUSTER 1422 ---
>gi|1789146|gb|AAC75825.1| suppressor of inhibitory function of ChpA, PemI-like, autoregulated [Escherichia coli K12]
>gi|1790671|gb|AAC77181.1| suppressor of inhibitory function of ChpB, PemI-like, autoregulated [Escherichia coli K12]
--- CLUSTER 1423 ---
>gi|1789174|gb|AAC75851.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789198|gb|AAC75872.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1424 ---
>gi|1786479|gb|AAC73388.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789231|gb|AAC75905.1| putative dehydrogenase [Escherichia coli K12]
--- CLUSTER 1425 ---
>gi|1789297|gb|AAC75966.1| putative transcriptional regulator [Escherichia coli K12]
>gi|1790029|gb|AAC76625.1| repressor for mtl [Escherichia coli K12]
--- CLUSTER 1426 ---
>gi|1789357|gb|AAC76020.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789358|gb|AAC76021.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789359|gb|AAC76022.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1427 ---
>gi|1789475|gb|AAC76126.1| altronate hydrolase [Escherichia coli K12]
>gi|1789516|gb|AAC76162.1| putative hydrolase [Escherichia coli K12]
--- CLUSTER 1428 ---
>gi|2367196|gb|AAC76138.1| putative cytochrome [Escherichia coli K12]
>gi|1789491|gb|AAC76139.1| putative cytochrome [Escherichia coli K12]
--- CLUSTER 1429 ---
>gi|1789493|gb|AAC76141.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789847|gb|AAC76464.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1430 ---
>gi|1789546|gb|AAC76190.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790761|gb|AAC77263.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1431 ---
>gi|1789608|gb|AAC76246.1| regulator of gltBDF operon, induction of Ntr enzymes [Escherichia coli K12]
>gi|1789613|gb|AAC76251.1| putative transcriptional regulator [Escherichia coli K12]
--- CLUSTER 1432 ---
>gi|1789781|gb|AAC76405.1| putative mutase [Escherichia coli K12]
>gi|1790843|gb|AAC77336.1| phosphopentomutase [Escherichia coli K12]
--- CLUSTER 1433 ---
>gi|1789845|gb|AAC76462.1| gluconokinase 2, thermoresistant [Escherichia coli K12]
>gi|1790719|gb|AAC77225.1| gluconate kinase, thermosensitive glucokinase [Escherichia coli K12]
--- CLUSTER 1434 ---
>gi|1789865|gb|AAC76481.1| high-affinity branched-chain amino acid transport [Escherichia coli K12]
>gi|1789866|gb|AAC76482.1| high-affinity branched-chain amino acid transport system; membrane component [Escherichia coli K12]
--- CLUSTER 1435 ---
>gi|1789867|gb|AAC76483.1| high-affinity leucine-specific transport system; periplasmic binding protein [Escherichia coli K12]
>gi|1789870|gb|AAC76485.1| high-affinity amino acid transport system; periplasmic binding protein [Escherichia coli K12]
--- CLUSTER 1436 ---
>gi|1789902|gb|AAC76513.1| orf, hypothetical protein [Escherichia coli K12]
>gi|2367233|gb|AAC76515.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1437 ---
>gi|1789923|gb|AAC76532.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789928|gb|AAC76537.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1438 ---
>gi|1789972|gb|AAC76574.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790442|gb|AAC76982.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1439 ---
>gi|1789985|gb|AAC76586.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1789986|gb|AAC76587.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1440 ---
>gi|1790013|gb|AAC76611.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790025|gb|AAC76622.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1441 ---
>gi|2367256|gb|AAC76680.1| orf, hypothetical protein [Escherichia coli K12]
>gi|2367323|gb|AAC76875.1| putative glycosidase [Escherichia coli K12]
--- CLUSTER 1442 ---
>gi|1790120|gb|AAC76709.1| heat shock protein [Escherichia coli K12]
>gi|1790122|gb|AAC76710.1| heat shock protein [Escherichia coli K12]
--- CLUSTER 1443 ---
>gi|1787288|gb|AAC74134.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790123|gb|AAC76711.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1444 ---
>gi|1789374|gb|AAC76036.1| orf, hypothetical protein [Escherichia coli K12]
>gi|2367305|gb|AAC76833.1| putative enzyme [Escherichia coli K12]
--- CLUSTER 1445 ---
>gi|1790307|gb|AAC76872.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790765|gb|AAC77267.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1446 ---
>gi|1790648|gb|AAC77161.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790781|gb|AAC77281.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1447 ---
>gi|1786807|gb|AAC73693.1| ferric enterobactin (enterochelin) binding protein; periplasmic component [Escherichia coli K12]
>gi|1790742|gb|AAC77246.1| citrate-dependent iron transport, periplasmic protein [Escherichia coli K12]
--- CLUSTER 1449 ---
>gi|1573152|gb|AAC21863.1| O-succinylbenzoate--CoA ligase (menE) [Haemophilus influenzae Rd]
>gi|1788595|gb|AAC75320.1| o-succinylbenzoate-CoA ligase [Escherichia coli K12]
--- CLUSTER 1450 ---
>gi|1786801|gb|AAC73687.1| ATP-dependent serine activating enzyme (may be part of enterobactin synthase as component F) [Escherichia coli K12]
>gi|1790505|gb|AAC77039.1| acetyl-CoA synthetase [Escherichia coli K12]
--- CLUSTER 1451 ---
>gi|1786529|gb|AAC73438.1| putative propionyl-CoA synthetase [Escherichia coli K12]
>gi|1790505|gb|AAC77039.1| acetyl-CoA synthetase [Escherichia coli K12]
--- CLUSTER 1452 ---
>gi|1573360|gb|AAC22049.1| long chain fatty acid coenzyme A ligase (fadD) [Haemophilus influenzae Rd]
>gi|1786221|gb|AAC73148.1| probable crotonobetaine/carnitine-CoA ligase [Escherichia coli K12]
>gi|1786810|gb|AAC73695.1| 2,3-dihydroxybenzoate-AMP ligase [Escherichia coli K12]
>gi|1787993|gb|AAC74771.1| putative ligase/synthetase [Escherichia coli K12]
>gi|1788107|gb|AAC74875.1| acyl-CoA synthetase, long-chain-fatty-acid--CoA ligase [Escherichia coli K12]
>gi|1789201|gb|AAC75875.1| 2-acyl-glycerophospho-ethanolamine acyltransferase; acyl-acyl-carrier protein synthetase [Escherichia coli K12]
>gi|1790505|gb|AAC77039.1| acetyl-CoA synthetase [Escherichia coli K12]
--- CLUSTER 1453 --- SPLIT INTO 1831 1832
>gi|1573586|gb|AAC22254.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786651|gb|AAC73549.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790260|gb|AAC76829.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1454 ---
>gi|1572947|gb|AAC21682.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1573586|gb|AAC22254.1| conserved hypothetical protein [Haemophilus influenzae Rd]
--- CLUSTER 1455 ---
>gi|1786982|gb|AAC73853.1| putative phosphatase [Escherichia coli K12]
>gi|2367265|gb|AAC76720.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1456 ---
>gi|1572947|gb|AAC21682.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|2367265|gb|AAC76720.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1457 ---
>gi|1787043|gb|AAC73909.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1787067|gb|AAC73931.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1458 ---
>gi|1574077|gb|AAC22702.1| ferredoxin-type protein (napF) [Haemophilus influenzae Rd]
>gi|1788536|gb|AAC75268.1| ferredoxin-type protein: electron transfer [Escherichia coli K12]
--- CLUSTER 1459 ---
>gi|1573313|gb|AAC22004.1| ferredoxin-type protein (napF) [Haemophilus influenzae Rd]
>gi|1788536|gb|AAC75268.1| ferredoxin-type protein: electron transfer [Escherichia coli K12]
--- CLUSTER 1460 ---
>gi|1788833|gb|AAC75541.1| hydrogenase 4 Fe-S subunit [Escherichia coli K12]
>gi|1789075|gb|AAC75762.1| probable iron-sulfur protein of hydrogenase 3 (part of FHL complex) [Escherichia coli K12]
--- CLUSTER 1461 ---
>gi|1788617|gb|AAC75341.1| NADH dehydrogenase I chain I [Escherichia coli K12]
>gi|1788833|gb|AAC75541.1| hydrogenase 4 Fe-S subunit [Escherichia coli K12]
--- CLUSTER 1462 ---
>gi|1786960|gb|AAC73833.1| membrane spanning protein, required for outer membrane integrity [Escherichia coli K12]
>gi|1789559|gb|AAC76202.1| protein chain initiation factor IF-2 [Escherichia coli K12]
--- CLUSTER 1463 --- SPLIT INTO 1833 1834 1835 1836
>gi|1572960|gb|AAC21694.1| GTP-binding membrane protein (lepA) [Haemophilus influenzae Rd]
>gi|1573560|gb|AAC22236.1| elongation factor Tu (tufA) [Haemophilus influenzae Rd]
>gi|1573567|gb|AAC22237.1| elongation factor G (fusA) [Haemophilus influenzae Rd]
>gi|1573634|gb|AAC22292.1| elongation factor Tu (tufB) [Haemophilus influenzae Rd]
>gi|1573710|gb|AAC22366.1| selenocysteine-specific elongation factor (selB) [Haemophilus influenzae Rd]
>gi|1573881|gb|AAC22523.1| GTP-binding protein [Haemophilus influenzae Rd]
>gi|1574742|gb|AAC22933.1| translation initiation factor 2 (infB) [Haemophilus influenzae Rd]
>gi|1574592|gb|AAC23380.1| peptide chain release factor 3 (prfC) [Haemophilus influenzae Rd]
>gi|1788922|gb|AAC75622.1| GTP-binding elongation factor, may be inner membrane protein [Escherichia coli K12]
>gi|1789108|gb|AAC75793.1| ATP-sulfurylase (ATP:sulfate adenylyltransferase), subunit 1, probably a GTPase [Escherichia coli K12]
>gi|1789559|gb|AAC76202.1| protein chain initiation factor IF-2 [Escherichia coli K12]
>gi|1789737|gb|AAC76364.1| protein chain elongation factor EF-Tu (duplicate of tufB) [Escherichia coli K12]
>gi|1789738|gb|AAC76365.1| GTP-binding protein chain elongation factor EF-G [Escherichia coli K12]
>gi|2367247|gb|AAC76614.1| selenocysteinyl-tRNA-specific translation factor [Escherichia coli K12]
>gi|1790302|gb|AAC76868.1| putative GTP-binding factor [Escherichia coli K12]
>gi|1790412|gb|AAC76954.1| protein chain elongation factor EF-Tu (duplicate of tufA) [Escherichia coli K12]
>gi|1790835|gb|AAC77328.1| peptide chain release factor RF-3 [Escherichia coli K12]
--- CLUSTER 1464 ---
>gi|1787636|gb|AAC74454.1| putative membrane protein [Escherichia coli K12]
>gi|1787829|gb|AAC74620.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1465 ---
>gi|1787403|gb|AAC74241.1| putative tail fiber protein [Escherichia coli K12]
>gi|1787636|gb|AAC74454.1| putative membrane protein [Escherichia coli K12]
--- CLUSTER 1466 ---
>gi|1786960|gb|AAC73833.1| membrane spanning protein, required for outer membrane integrity [Escherichia coli K12]
>gi|1787916|gb|AAC74701.1| putative membrane protein [Escherichia coli K12]
--- CLUSTER 1467 ---
>gi|1574537|gb|AAC23331.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787916|gb|AAC74701.1| putative membrane protein [Escherichia coli K12]
--- CLUSTER 1468 ---
>gi|1787122|gb|AAC73981.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli K12]
>gi|1787963|gb|AAC74744.1| putative oxidoreductase, Fe-S subunit [Escherichia coli K12]
--- CLUSTER 1469 --- SPLIT INTO 1837 1838
>gi|1788468|gb|AAC75207.1| putative oxidoreductase [Escherichia coli K12]
>gi|1788811|gb|AAC75521.1| putative oxidoreductase, Fe-S subunit [Escherichia coli K12]
>gi|1788826|gb|AAC75534.1| hydrogenase 4 Fe-S subunit [Escherichia coli K12]
>gi|1789067|gb|AAC75755.1| involved in electron transport from formate to hydrogen, Fe-S centers [Escherichia coli K12]
>gi|1789079|gb|AAC75766.1| probable small subunit of hydrogenase-3, iron-sulfur protein (part of formate hydrogenlyase (FHL) complex) [Escherichia coli K12]
>gi|1789243|gb|AAC75916.1| putative oxidoreductase, Fe-S subunit [Escherichia coli K12]
>gi|1789252|gb|AAC75924.1| putative oxidoreductase, Fe-S subunit [Escherichia coli K12]
>gi|1789253|gb|AAC75925.1| putative oxidoreductase, Fe-S subunit [Escherichia coli K12]
>gi|1789606|gb|AAC76245.1| glutamate synthase, small subunit [Escherichia coli K12]
>gi|2367245|gb|AAC76597.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1470 --- SPLIT INTO 1839 1840
>gi|1572950|gb|AAC21685.1| formate dehydrogenase, beta subunit (fdxH) [Haemophilus influenzae Rd]
>gi|1574080|gb|AAC22705.1| anaerobic dimethyl sulfoxide reductase, chain B (dmsB) [Haemophilus influenzae Rd]
>gi|1574621|gb|AAC22725.1| nitrite reductase, Fe-S protein (nrfC) [Haemophilus influenzae Rd]
>gi|1787122|gb|AAC73981.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli K12]
>gi|1787478|gb|AAC74309.1| nitrate reductase 1, beta subunit [Escherichia coli K12]
>gi|1787740|gb|AAC74549.1| cryptic nitrate reductase 2, beta subunit [Escherichia coli K12]
>gi|1787749|gb|AAD13439.1| formate dehydrogenase-N, nitrate-inducible, iron-sulfur beta subunit [Escherichia coli K12]
>gi|1787872|gb|AAC74661.1| putative oxidoreductase, Fe-S subunit [Escherichia coli K12]
>gi|1787960|gb|AAC74741.1| putative oxidoreductase, Fe-S subunit [Escherichia coli K12]
>gi|1789370|gb|AAC76032.1| hydrogenase-2 small subunit [Escherichia coli K12]
>gi|2367245|gb|AAC76597.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790326|gb|AAD13455.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli K12]
>gi|2367345|gb|AAC77042.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli K12]
--- CLUSTER 1471 --- SPLIT INTO 1841 1842 1843
>gi|1572957|gb|AAC21691.1| GTP-binding protein (era) [Haemophilus influenzae Rd]
>gi|1573089|gb|AAC21807.1| GTP-binding protein [Haemophilus influenzae Rd]
>gi|1574033|gb|AAC22664.1| thiophene and furan oxidation protein (thdF) [Haemophilus influenzae Rd]
>gi|1788858|gb|AAC75564.1| putative GTP-binding factor [Escherichia coli K12]
>gi|1788919|gb|AAC75619.1| GTP-binding protein [Escherichia coli K12]
>gi|2367268|gb|AAC76729.1| GTP-binding protein in thiophene and furan oxidation [Escherichia coli K12]
--- CLUSTER 1472 ---
>gi|1572957|gb|AAC21691.1| GTP-binding protein (era) [Haemophilus influenzae Rd]
>gi|1789813|gb|AAC76434.1| ferrous iron transport protein B [Escherichia coli K12]
--- CLUSTER 1473 --- SPLIT INTO 1844 1845 1846
>gi|1573136|gb|AAC21849.1| formate acetyltransferase (pfl) [Haemophilus influenzae Rd]
>gi|1787044|gb|AAC73910.1| putative formate acetyltransferase [Escherichia coli K12]
>gi|1787131|gb|AAC73989.1| formate acetyltransferase 1 [Escherichia coli K12]
>gi|1789502|gb|AAC76149.1| probable formate acetyltransferase 3 [Escherichia coli K12]
>gi|1790388|gb|AAC76933.1| formate acetyltransferase 2 [Escherichia coli K12]
--- CLUSTER 1474 ---
>gi|1572961|gb|AAC21695.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1573136|gb|AAC21849.1| formate acetyltransferase (pfl) [Haemophilus influenzae Rd]
--- CLUSTER 1475 ---
>gi|1572961|gb|AAC21695.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788933|gb|AAC75632.1| putative formate acetyltransferase [Escherichia coli K12]
--- CLUSTER 1476 ---
>gi|1572974|gb|AAC21707.1| penicillin-binding protein 5 (dacA) [Haemophilus influenzae Rd]
>gi|1786851|gb|AAC73733.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 [Escherichia coli K12]
>gi|1787062|gb|AAC73926.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6 [Escherichia coli K12]
>gi|1788320|gb|AAC75071.1| penicillin binding protein 6b [Escherichia coli K12]
--- CLUSTER 1477 ---
>gi|1573331|gb|AAC22022.1| penicillin-binding protein 7, putative [Haemophilus influenzae Rd]
>gi|1788455|gb|AAC75195.1| penicillin-binding protein 7 [Escherichia coli K12]
--- CLUSTER 1478 ---
>gi|1572974|gb|AAC21707.1| penicillin-binding protein 5 (dacA) [Haemophilus influenzae Rd]
>gi|1788455|gb|AAC75195.1| penicillin-binding protein 7 [Escherichia coli K12]
--- CLUSTER 1479 ---
>gi|1572982|gb|AAC21714.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1574308|gb|AAC23116.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1787772|gb|AAC74569.1| putative ATP-binding component of a transport system [Escherichia coli K12]
--- CLUSTER 1480 ---
>gi|1573483|gb|AAC22160.1| D-ribose ABC transporter, ATP-binding protein (rbsA) [Haemophilus influenzae Rd]
>gi|1790676|gb|AAC77186.1| putative ATP-binding component of a transport system [Escherichia coli K12]
--- CLUSTER 1481 ---
>gi|1787500|gb|AAC74329.1| homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system [Escherichia coli K12]
>gi|1787972|gb|AAC74752.1| putative ATP-binding component of a transport system [Escherichia coli K12]
--- CLUSTER 1482 --- SPLIT INTO 1847 1848
>gi|1573008|gb|AAC21738.1| ABC transporter, ATP-binding protein (msbA) [Haemophilus influenzae Rd]
>gi|1573050|gb|AAC21775.1| iron(III) ABC transporter, ATP-binding protein (hitC) [Haemophilus influenzae Rd]
>gi|1573081|gb|AAC21800.1| ferric ABC transporter, ATP-binding protein (afuC) [Haemophilus influenzae Rd]
>gi|1573323|gb|AAC22014.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1573329|gb|AAC22020.1| iron (chelated) transporter, ATP-binding protein (yfeB) [Haemophilus influenzae Rd]
>gi|1573381|gb|AAC22067.1| ABC transporter, ATP-binding protein (yebM) [Haemophilus influenzae Rd]
>gi|1573483|gb|AAC22160.1| D-ribose ABC transporter, ATP-binding protein (rbsA) [Haemophilus influenzae Rd]
>gi|1573615|gb|AAC22280.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1573657|gb|AAC22317.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1573662|gb|AAC22320.1| ATP-binding transport protein (cydD) [Haemophilus influenzae Rd]
>gi|1573663|gb|AAC22321.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1573777|gb|AAC22427.1| cell division ATP-binding protein (ftsE) [Haemophilus influenzae Rd]
>gi|1573836|gb|AAC22482.1| galactoside ABC transporter, ATP-binding protein (mglA) [Haemophilus influenzae Rd]
>gi|1574050|gb|AAC22680.1| thiamin ABC transporter, ATP-binding protein, putative [Haemophilus influenzae Rd]
>gi|1574084|gb|AAC22709.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1574632|gb|AAC22734.1| amino acid ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1574641|gb|AAC22743.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1574644|gb|AAC22746.1| heme exporter ATP-binding protein A (ccmA) [Haemophilus influenzae Rd]
>gi|1574664|gb|AAC22764.1| D-xylose ABC transporter, ATP-binding protein (xylG) [Haemophilus influenzae Rd]
>gi|1574675|gb|AAC22774.1| oligopeptide ABC transporter, ATP-binding protein (oppF) [Haemophilus influenzae Rd]
>gi|1574676|gb|AAC22775.1| oligopeptide ABC transporter, ATP-binding protein (oppD) [Haemophilus influenzae Rd]
>gi|1574704|gb|AAC22803.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1574713|gb|AAC22811.1| transport ATP-binding protein (cydC) [Haemophilus influenzae Rd]
>gi|1574714|gb|AAC22812.1| ATP-binding protein protein (cydD) [Haemophilus influenzae Rd]
>gi|1574105|gb|AAC22831.1| arginine ABC transporter, ATP-binding protein (artP) [Haemophilus influenzae Rd]
>gi|1574111|gb|AAC22837.1| dipeptide ABC transporter, ATP-binding protein (dppF) [Haemophilus influenzae Rd]
>gi|1574112|gb|AAC22838.1| dipeptide ABC transporter, ATP-binding protein (dppD) [Haemophilus influenzae Rd]
>gi|1574184|gb|AAC22902.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1574727|gb|AAC22920.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1574757|gb|AAC22945.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1574802|gb|AAC22987.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1574806|gb|AAC22991.1| spermidine/putrescine ABC transporter, ATP-binding protein (potA) [Haemophilus influenzae Rd]
>gi|1574311|gb|AAC23118.1| iron chelatin ABC transporter, ATP-binding protein, putative [Haemophilus influenzae Rd]
>gi|1574315|gb|AAC23122.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1574394|gb|AAC23199.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1574464|gb|AAC23266.1| ABC transporter, ATP-binding protein [Haemophilus influenzae Rd]
>gi|1574489|gb|AAC23288.1| peptide ABC transporter, ATP-binding protein (sapD) [Haemophilus influenzae Rd]
>gi|1574490|gb|AAC23289.1| peptide ABC transporter, ATP-binding protein (sapF) [Haemophilus influenzae Rd]
>gi|1574544|gb|AAC23337.1| molybdenum ABC transporter, ATP-binding protein (modC) [Haemophilus influenzae Rd]
>gi|1786253|gb|AAC73177.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1786319|gb|AAC73238.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1786345|gb|AAC73262.1| ATP-binding component of hydroxymate-dependent iron transport [Escherichia coli K12]
>gi|1786398|gb|AAC73310.1| ATP-binding component of a transporter [Escherichia coli K12]
>gi|1786457|gb|AAC73365.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1786563|gb|AAC73469.1| taurine ATP-binding component of a transport system [Escherichia coli K12]
>gi|1786653|gb|AAC73551.1| ATP-binding component of a transport system [Escherichia coli K12]
>gi|1786654|gb|AAC73552.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1786698|gb|AAC73592.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1786703|gb|AAC73597.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1786803|gb|AAC73689.1| ATP-binding component of ferric enterobactin transport [Escherichia coli K12]
>gi|1786872|gb|AAC73753.1| ATP-binding protein of glutamate/aspartate transport system [Escherichia coli K12]
>gi|1786975|gb|AAC73847.1| ATP-binding component of molybdate transport system [Escherichia coli K12]
>gi|1786981|gb|AAC73852.1| ATP-binding component of molybdate transport [Escherichia coli K12]
>gi|1787012|gb|AAC73881.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787029|gb|AAC73896.1| ATP-binding component of glutamine high-affinity transport system [Escherichia coli K12]
>gi|1787041|gb|AAC73907.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787051|gb|AAC73916.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787079|gb|AAC73942.1| ATP-binding component of putrescine transport system [Escherichia coli K12]
>gi|1787089|gb|AAC73951.1| ATP-binding component of 3rd arginine transport system [Escherichia coli K12]
>gi|1787105|gb|AAC73966.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787112|gb|AAC73972.1| ATP-binding component of cytochrome-related transport [Escherichia coli K12]
>gi|1787113|gb|AAC73973.1| ATP-binding component of cytochrome-related transport, Zn sensitive [Escherichia coli K12]
>gi|1787143|gb|AAC74000.1| ATP-binding transport protein; multicopy suppressor of htrB [Escherichia coli K12]
>gi|1787164|gb|AAC74019.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787182|gb|AAC74035.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787361|gb|AAC74201.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787370|gb|AAC74210.1| ATP-binding component of spermidine/putrescine transport [Escherichia coli K12]
>gi|1787499|gb|AAC74328.1| homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system [Escherichia coli K12]
>gi|1787500|gb|AAC74329.1| homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system [Escherichia coli K12]
>gi|1787547|gb|AAC74372.1| putative ATP-binding protein of peptide transport system [Escherichia coli K12]
>gi|1787548|gb|AAC74373.1| putative ATP-binding protein of peptide transport system [Escherichia coli K12]
>gi|1787577|gb|AAC74400.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787712|gb|AAC74523.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787758|gb|AAC74556.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787759|gb|AAC74557.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1787792|gb|AAC74586.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1788002|gb|AAC74779.1| ATP-binding component of vitamin B12 transport system [Escherichia coli K12]
>gi|1788053|gb|AAC74826.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1788165|gb|AAC74928.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1788210|gb|AAC74970.1| ATP-binding component of high-affinity L-arabinose transport system [Escherichia coli K12]
>gi|1788225|gb|AAC74984.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1788450|gb|AAC75190.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1788472|gb|AAC75210.1| ATP-binding component of methyl-galactoside transport and galactose taxis [Escherichia coli K12]
>gi|1788506|gb|AAC75241.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1788529|gb|AAC75261.1| ATP binding protein of heme exporter A [Escherichia coli K12]
>gi|1788540|gb|AAC75271.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1788644|gb|AAC75366.1| ATP-binding component of histidine transport [Escherichia coli K12]
>gi|1788761|gb|AAC75475.1| ATP-binding component of sulfate permease A protein; chromate resistance [Escherichia coli K12]
>gi|1788897|gb|AAC75600.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1789032|gb|AAC75724.1| ATP-binding component of transport system for glycine, betaine and proline [Escherichia coli K12]
>gi|1789586|gb|AAC76227.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1789593|gb|AAC76233.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1789672|gb|AAC76303.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1789751|gb|AAC76377.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1789859|gb|AAC76475.1| ATP-binding component of sn-glycerol 3-phosphate transport system [Escherichia coli K12]
>gi|1789863|gb|AAC76479.1| ATP-binding component of leucine transport [Escherichia coli K12]
>gi|1789864|gb|AAC76480.1| ATP-binding component of high-affinity branched-chain amino acid transport system [Escherichia coli K12]
>gi|1789873|gb|AAC76488.1| ATP-binding component of a membrane-associated complex involved in cell division [Escherichia coli K12]
>gi|1789890|gb|AAC76504.1| ATP-binding protein of nickel transport system [Escherichia coli K12]
>gi|1789891|gb|AAC76505.1| ATP-binding protein of nickel transport system [Escherichia coli K12]
>gi|2367231|gb|AAC76511.1| putative ATP-binding component of a transport system, fragment 1 [Escherichia coli K12]
>gi|1789962|gb|AAC76565.1| putative ATP-binding component of dipeptide transport system [Escherichia coli K12]
>gi|1789963|gb|AAC76566.1| putative ATP-binding component of dipeptide transport system [Escherichia coli K12]
>gi|1789991|gb|AAC76591.1| putative ATP-binding protein of xylose transport system [Escherichia coli K12]
>gi|1790162|gb|AAC76748.1| ATP-binding component of high-affinity phosphate-specific transport system [Escherichia coli K12]
>gi|1790190|gb|AAC76772.1| ATP-binding component of D-ribose high-affinity transport system [Escherichia coli K12]
>gi|1790467|gb|AAC77005.1| ATP-binding component of transport system for maltose [Escherichia coli K12]
>gi|1790525|gb|AAC77048.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1790534|gb|AAC77057.1| ATP-binding component of phosphonate transport [Escherichia coli K12]
>gi|1790535|gb|AAC77058.1| ATP-binding component of phosphonate transport [Escherichia coli K12]
>gi|1790544|gb|AAC77067.1| ATP-binding component of phosphonate transport [Escherichia coli K12]
>gi|1790675|gb|AAC77185.1| putative ATP-binding component of a transport system [Escherichia coli K12]
>gi|1790739|gb|AAC77243.1| ATP-binding component of citrate-dependent iron(III) transport protein [Escherichia coli K12]
>gi|2367384|gb|AAC77344.1| putative ATP-binding component of a transport system [Escherichia coli K12]
--- CLUSTER 1483 ---
>gi|1573215|gb|AAC21915.1| excinuclease ABC, subunit A (uvrA) [Haemophilus influenzae Rd]
>gi|2367343|gb|AAC77028.1| excision nuclease subunit A [Escherichia coli K12]
--- CLUSTER 1484 --- SPLIT INTO 1849 1850 1851 1852
>gi|1573131|gb|AAC21845.1| sfhB protein (sfhB) [Haemophilus influenzae Rd]
>gi|1573385|gb|AAC22071.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1573611|gb|AAC22276.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786244|gb|AAC73169.1| pseudouridylate synthase [Escherichia coli K12]
>gi|1787327|gb|AAC74170.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788946|gb|AAC75643.1| suppressor of ftsH mutation [Escherichia coli K12]
--- CLUSTER 1485 ---
>gi|1572988|gb|AAC21720.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786244|gb|AAC73169.1| pseudouridylate synthase [Escherichia coli K12]
--- CLUSTER 1486 ---
>gi|1574274|gb|AAC23084.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789155|gb|AAC75833.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1487 ---
>gi|1787572|gb|AAC74395.1| putative oxidoreductase [Escherichia coli K12]
>gi|1790045|gb|AAC76640.1| threonine dehydrogenase [Escherichia coli K12]
--- CLUSTER 1488 --- SPLIT INTO 1853 1854
>gi|1573000|gb|AAC21731.1| zinc-type alcohol dehydrogenase [Haemophilus influenzae Rd]
>gi|1573141|gb|AAC21854.1| alcohol dehydrogenase, class III (adhC) [Haemophilus influenzae Rd]
>gi|1786518|gb|AAC73428.1| putative oxidoreductase [Escherichia coli K12]
>gi|1786552|gb|AAC73459.1| alcohol dehydrogenase class III; formaldehyde dehydrogenase, glutathione-dependent [Escherichia coli K12]
>gi|1786825|gb|AAC73709.1| putative oxidoreductase [Escherichia coli K12]
>gi|1787753|gb|AAC74551.1| alcohol dehydrogenase [Escherichia coli K12]
>gi|1787863|gb|AAC74652.1| starvation sensing protein [Escherichia coli K12]
>gi|1788073|gb|AAC74844.1| putative oxidoreductase [Escherichia coli K12]
>gi|1788075|gb|AAC74846.1| putative oxidoreductase [Escherichia coli K12]
>gi|1788407|gb|AAC75152.1| galactitol-1-phosphate dehydrogenase [Escherichia coli K12]
>gi|1788895|gb|AAC75598.1| putative oxidoreductase [Escherichia coli K12]
>gi|1790045|gb|AAC76640.1| threonine dehydrogenase [Escherichia coli K12]
>gi|1790718|gb|AAC77224.1| L-idonate dehydrogenase [Escherichia coli K12]
>gi|1790720|gb|AAC77226.1| putative oxidoreductase [Escherichia coli K12]
>gi|1790819|gb|AAC77314.1| putative oxidoreductase [Escherichia coli K12]
--- CLUSTER 1489 ---
>gi|1574514|gb|AAC23310.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790838|gb|AAC77331.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1490 --- SPLIT INTO 1855 1856
>gi|1573029|gb|AAC21756.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1573428|gb|AAC22112.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787342|gb|AAC74184.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790274|gb|AAC76843.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1790838|gb|AAC77331.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1491 ---
>gi|1787270|gb|AAC74117.1| putative dehydrogenase [Escherichia coli K12]
>gi|2367243|gb|AAC76577.1| putative dehydrogenase [Escherichia coli K12]
--- CLUSTER 1492 ---
>gi|1573443|gb|AAC22124.1| D-3-phosphoglycerate dehydrogenase (serA) [Haemophilus influenzae Rd]
>gi|1788660|gb|AAC75380.1| erythronate-4-phosphate dehyrogenase [Escherichia coli K12]
--- CLUSTER 1493 --- SPLIT INTO 1857 1858 1859 1860 1861
>gi|1573036|gb|AAC21763.1| D-lactate dehydrogenase, fermentative (ldhA) [Haemophilus influenzae Rd]
>gi|1573443|gb|AAC22124.1| D-3-phosphoglycerate dehydrogenase (serA) [Haemophilus influenzae Rd]
>gi|1574400|gb|AAC23205.1| 2-hydroxyacid dehydrogenase [Haemophilus influenzae Rd]
>gi|1787645|gb|AAC74462.1| fermentative D-lactate dehydrogenase, NAD-dependent [Escherichia coli K12]
>gi|1789279|gb|AAC75950.1| D-3-phosphoglycerate dehydrogenase [Escherichia coli K12]
>gi|2367243|gb|AAC76577.1| putative dehydrogenase [Escherichia coli K12]
--- CLUSTER 1494 ---
>gi|1789843|gb|AAC76460.1| low-affinity gluconate transport permease protein, fragment 2 [Escherichia coli K12]
>gi|1790716|gb|AAC77222.1| L-idonate transporter [Escherichia coli K12]
--- CLUSTER 1495 --- SPLIT INTO 1862 1863
>gi|1574047|gb|AAC22676.1| gluconate permease (gntP) [Haemophilus influenzae Rd]
>gi|1788707|gb|AAC75424.1| transport system permease (serine?) [Escherichia coli K12]
>gi|1789097|gb|AAC75782.1| putative transport protein [Escherichia coli K12]
>gi|1789820|gb|AAC76440.1| high-affinity transport of gluconate / gluconate permease [Escherichia coli K12]
>gi|1789844|gb|AAC76461.1| low-affinity gluconate transport permease protein, interrupted [Escherichia coli K12]
>gi|1790716|gb|AAC77222.1| L-idonate transporter [Escherichia coli K12]
>gi|2367370|gb|AAC77252.1| putative transport system permease [Escherichia coli K12]
>gi|1790776|gb|AAC77277.1| gluconate transport system permease 3 [Escherichia coli K12]
--- CLUSTER 1496 ---
>gi|1573043|gb|AAC21770.1| H. influenzae predicted coding region HI0092 [Haemophilus influenzae Rd]
>gi|1574047|gb|AAC22676.1| gluconate permease (gntP) [Haemophilus influenzae Rd]
--- CLUSTER 1497 ---
>gi|1573060|gb|AAC21785.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1788966|gb|AAC75662.1| putative transport protein [Escherichia coli K12]
--- CLUSTER 1498 --- SPLIT INTO 1864 1865
>gi|1573003|gb|AAC21734.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1573060|gb|AAC21785.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1573270|gb|AAC21966.1| hemolysin, putative [Haemophilus influenzae Rd]
>gi|1573427|gb|AAC22110.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1786879|gb|AAC73759.1| putative transport protein [Escherichia coli K12]
>gi|1788119|gb|AAC74886.1| putative transport protein [Escherichia coli K12]
>gi|1788377|gb|AAC75124.1| putative transport protein [Escherichia coli K12]
>gi|1789197|gb|AAC75871.1| putative transport protein [Escherichia coli K12]
>gi|1790664|gb|AAC77175.1| putative transport protein [Escherichia coli K12]
--- CLUSTER 1499 ---
>gi|1788307|gb|AAC75059.1| orf, hypothetical protein [Escherichia coli K12]
>gi|1788478|gb|AAC75216.1| outer membrane receptor for iron-regulated colicin I receptor; porin; requires tonB gene product [Escherichia coli K12]
--- CLUSTER 1500 ---
>gi|1786798|gb|AAC73685.1| outer membrane receptor for ferric enterobactin (enterochelin) and colicins B and D [Escherichia coli K12]
>gi|1788478|gb|AAC75216.1| outer membrane receptor for iron-regulated colicin I receptor; porin; requires tonB gene product [Escherichia coli K12]
--- CLUSTER 1501 --- SPLIT INTO 1866 1867 1868 1869 1870 1871 1872
>gi|3212228|gb|AAC23131.1| H. influenzae predicted coding region HI1466.1 [Haemophilus influenzae Rd]
>gi|1786344|gb|AAC73261.1| outer membrane protein receptor for ferrichrome, colicin M, and phages T1, T5, and phi80 [Escherichia coli K12]
>gi|1787024|gb|AAC73892.1| putative outer membrane receptor for iron transport [Escherichia coli K12]
>gi|1787344|gb|AAC74186.1| outer membrane receptor for ferric iron uptake [Escherichia coli K12]
>gi|1787723|gb|AAC74533.1| putative outer membrane receptor for iron transport [Escherichia coli K12]
>gi|1788478|gb|AAC75216.1| outer membrane receptor for iron-regulated colicin I receptor; porin; requires tonB gene product [Escherichia coli K12]
>gi|1790405|gb|AAC76948.1| outer membrane receptor for transport of vitamin B12, E colicins, and bacteriophage BF23 [Escherichia coli K12]
>gi|1790743|gb|AAC77247.1| outer membrane receptor; citrate-dependent iron transport, outer membrane receptor [Escherichia coli K12]
--- CLUSTER 1502 ---
>gi|1573228|gb|AAC21927.1| heme-hemopexin utilization protein C [Haemophilus influenzae Rd]
>gi|1790405|gb|AAC76948.1| outer membrane receptor for transport of vitamin B12, E colicins, and bacteriophage BF23 [Escherichia coli K12]
--- CLUSTER 1503 --- SPLIT INTO 1873 1874
>gi|1573631|gb|AAC22294.1| hemoglobin-binding protein [Haemophilus influenzae Rd]
>gi|3212198|gb|AAC22319.1| hemoglobin-binding protein [Haemophilus influenzae Rd]
>gi|1573714|gb|AAC22369.1| hemoglobin-binding protein [Haemophilus influenzae Rd]
>gi|1574024|gb|AAC22656.1| transferrin-binding protein 1 precursor (tbp1) [Haemophilus influenzae Rd]
>gi|3212230|gb|AAC23213.1| hemoglobin-binding protein [Haemophilus influenzae Rd]
>gi|3212231|gb|AAC23214.1| TonB-dependent receptor, putative [Haemophilus influenzae Rd]
--- CLUSTER 1504 ---
>gi|1573065|gb|AAC21789.1| hemin receptor (hemR) [Haemophilus influenzae Rd]
>gi|1573714|gb|AAC22369.1| hemoglobin-binding protein [Haemophilus influenzae Rd]
--- CLUSTER 1505 ---
>gi|1573073|gb|AAC21793.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1789177|gb|AAC75854.1| putative enzyme [Escherichia coli K12]
--- CLUSTER 1506 ---
>gi|1574288|gb|AAC23099.1| molybdopterin biosynthesis protein (moeB) [Haemophilus influenzae Rd]
>gi|1787048|gb|AAC73913.1| molybdopterin biosynthesis [Escherichia coli K12]
>gi|1790425|gb|AAC76966.1| thiamin biosynthesis, thiazole moiety [Escherichia coli K12]
--- CLUSTER 1507 ---
>gi|1573076|gb|AAC21795.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1574695|gb|AAC22794.1| UDP-N-acetylmuramate--alanine ligase (murC) [Haemophilus influenzae Rd]
>gi|1786279|gb|AAC73202.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase [Escherichia coli K12]
>gi|1790680|gb|AAC77190.1| putative ligase [Escherichia coli K12]
--- CLUSTER 1508 ---
>gi|1574689|gb|AAC22789.1| UDP-MurNAc-pentapeptide synthetase (murF) [Haemophilus influenzae Rd]
>gi|1786274|gb|AAC73197.1| D-alanine:D-alanine-adding enzyme [Escherichia coli K12]
--- CLUSTER 1509 ---
>gi|1574633|gb|AAC22735.1| amino acid ABC transporter, permease protein [Haemophilus influenzae Rd]
>gi|1786397|gb|AAC73309.1| putative transport system permease protein [Escherichia coli K12]
--- CLUSTER 1510 --- SPLIT INTO 1875 1876
>gi|1574633|gb|AAC22735.1| amino acid ABC transporter, permease protein [Haemophilus influenzae Rd]
>gi|1574102|gb|AAC22828.1| arginine ABC transporter, permease protein (artM) [Haemophilus influenzae Rd]
>gi|1574103|gb|AAC22829.1| arginine ABC transporter, permease protein (artQ) [Haemophilus influenzae Rd]
>gi|1786873|gb|AAC73754.1| glutamate/aspartate transport system permease [Escherichia coli K12]
>gi|1786874|gb|AAC73755.1| glutamate/aspartate transport system permease [Escherichia coli K12]
>gi|1787030|gb|AAC73897.1| glutamine high-affinity transport system; membrane component [Escherichia coli K12]
>gi|1787086|gb|AAC73948.1| arginine 3rd transport system permease protein [Escherichia coli K12]
>gi|1787087|gb|AAC73949.1| arginine 3rd transport system permease protein [Escherichia coli K12]
>gi|1788226|gb|AAC74985.1| putative transport system permease protein (former yecC) [Escherichia coli K12]
>gi|1788645|gb|AAC75367.1| histidine transport, membrane protein M [Escherichia coli K12]
>gi|1788646|gb|AAC75368.1| histidine transport system permease protein [Escherichia coli K12]
>gi|1789669|gb|AAC76301.1| putative transport system permease protein [Escherichia coli K12]
>gi|1789671|gb|AAC76302.1| putative transport system permease protein [Escherichia coli K12]
--- CLUSTER 1511 ---
>gi|1786397|gb|AAC73309.1| putative transport system permease protein [Escherichia coli K12]
>gi|1788451|gb|AAC75191.1| putative transport system permease protein [Escherichia coli K12]
--- CLUSTER 1512 ---
>gi|1788449|gb|AAC75189.1| putative transport system permease protein [Escherichia coli K12]
>gi|1788451|gb|AAC75191.1| putative transport system permease protein [Escherichia coli K12]
>gi|1789033|gb|AAC75725.1| high-affinity transport system for glycine betaine and proline [Escherichia coli K12]
--- CLUSTER 1513 ---
>gi|1573324|gb|AAC22015.1| ABC transporter, permease protein [Haemophilus influenzae Rd]
>gi|1786564|gb|AAC73470.1| taurine transport system permease protein [Escherichia coli K12]
>gi|1787165|gb|AAC74020.1| putative transport system permease protein [Escherichia coli K12]
>gi|1789033|gb|AAC75725.1| high-affinity transport system for glycine betaine and proline [Escherichia coli K12]
--- CLUSTER 1514 ---
>gi|1787571|gb|AAC74394.1| putative transport system permease protein [Escherichia coli K12]
>gi|1789860|gb|AAC76476.1| sn-glycerol 3-phosphate transport system, integral membrane protein [Escherichia coli K12]
>gi|1790464|gb|AAC77002.1| part of maltose permease, inner membrane [Escherichia coli K12]
--- CLUSTER 1515 ---
>gi|1787570|gb|AAC74393.1| putative binding-protein dependent transport protein [Escherichia coli K12]
>gi|1789861|gb|AAC76477.1| sn-glycerol 3-phosphate transport system, integral membrane protein [Escherichia coli K12]
>gi|1790465|gb|AAC77003.1| part of maltose permease, periplasmic [Escherichia coli K12]
--- CLUSTER 1516 ---
>gi|1574805|gb|AAC22990.1| spermidine/putrescine ABC transporter, permease protein (potB) [Haemophilus influenzae Rd]
>gi|1787570|gb|AAC74393.1| putative binding-protein dependent transport protein [Escherichia coli K12]
--- CLUSTER 1517 --- SPLIT INTO 1877 1878 1879 1880 1881
>gi|3212179|gb|AAC21802.1| H. influenzae predicted coding region HI0129 [Haemophilus influenzae Rd]
>gi|1574049|gb|AAC22679.1| thiamin ABC transporter, permease protein, putative [Haemophilus influenzae Rd]
>gi|1574804|gb|AAC22989.1| spermidine/putrescine ABC transporter, permease protein (potC) [Haemophilus influenzae Rd]
>gi|1574805|gb|AAC22990.1| spermidine/putrescine ABC transporter, permease protein (potB) [Haemophilus influenzae Rd]
>gi|1574545|gb|AAC23338.1| molybdenum ABC transporter, permease protein (modB) [Haemophilus influenzae Rd]
>gi|1786254|gb|AAC73178.1| putative transport system permease protein [Escherichia coli K12]
>gi|1786980|gb|AAC73851.1| molybdate transport permease protein [Escherichia coli K12]
>gi|1787080|gb|AAC73943.1| putrescine transport protein; permease [Escherichia coli K12]
>gi|1787081|gb|AAC73944.1| putrescine transport protein; permease [Escherichia coli K12]
>gi|1787368|gb|AAC74208.1| spermidine/putrescine transport system permease [Escherichia coli K12]
>gi|1787369|gb|AAC74209.1| spermidine/putrescine transport system permease [Escherichia coli K12]
>gi|1787571|gb|AAC74394.1| putative transport system permease protein [Escherichia coli K12]
>gi|1787713|gb|AAC74524.1| putative transport system permease protein [Escherichia coli K12]
>gi|1787714|gb|AAC74525.1| putative transport system permease protein [Escherichia coli K12]
>gi|1788762|gb|AAC75476.1| sulfate transport system permease W protein [Escherichia coli K12]
>gi|1788764|gb|AAC75477.1| sulfate, thiosulfate transport system permease T protein [Escherichia coli K12]
--- CLUSTER 1518 ---
>gi|1787363|gb|AAC74203.1| putative NAGC-like transcriptional regulator [Escherichia coli K12]
>gi|1790522|gb|AAC77045.1| putative NAGC-like transcriptional regulator [Escherichia coli K12]
--- CLUSTER 1519 --- SPLIT INTO 1882 1883 1884
>gi|1573100|gb|AAC21816.1| glucose kinase, putative [Haemophilus influenzae Rd]
>gi|1573138|gb|AAC21851.1| sugar kinase, putative [Haemophilus influenzae Rd]
>gi|1786593|gb|AAC73497.1| possible NAGC-like transcriptional regulator [Escherichia coli K12]
>gi|1786891|gb|AAC73770.1| transcriptional repressor of nag (N-acetylglucosamine) operon [Escherichia coli K12]
>gi|1787363|gb|AAC74203.1| putative NAGC-like transcriptional regulator [Escherichia coli K12]
>gi|1787878|gb|AAC74666.1| putative NAGC-like transcriptional regulator [Escherichia coli K12]
>gi|1788901|gb|AAC75603.1| putative NAGC-like transcriptional regulator [Escherichia coli K12]
>gi|1789616|gb|AAC76254.1| putative NAGC-like transcriptional regulator [Escherichia coli K12]
--- CLUSTER 1520 --- SPLIT INTO 1885 1886
>gi|1573108|gb|AAC21822.1| hflK protein (hflK) [Haemophilus influenzae Rd]
>gi|1786697|gb|AAC73591.1| putative protease [Escherichia coli K12]
>gi|1790616|gb|AAC77131.1| protease specific for phage lambda cII repressor [Escherichia coli K12]
--- CLUSTER 1521 ---
>gi|1573107|gb|AAC21821.1| hflC protein (hflC) [Haemophilus influenzae Rd]
>gi|1573108|gb|AAC21822.1| hflK protein (hflK) [Haemophilus influenzae Rd]
--- CLUSTER 1522 ---
>gi|1788892|gb|AAC75595.1| ferredoxin reductase subunit of phenylpropionate dioxygenase [Escherichia coli K12]
>gi|1789065|gb|AAC75753.1| putative oxidoreductase [Escherichia coli K12]
>gi|1789765|gb|AAC76390.1| nitrite reductase (NAD(P)H) subunit [Escherichia coli K12]
--- CLUSTER 1523 ---
>gi|1789765|gb|AAC76390.1| nitrite reductase (NAD(P)H) subunit [Escherichia coli K12]
>gi|1790400|gb|AAC76944.1| putative oxidoreductase [Escherichia coli K12]
--- CLUSTER 1524 ---
>gi|1573119|gb|AAC21833.1| glutathione reductase (gor) [Haemophilus influenzae Rd]
>gi|1574161|gb|AAC22884.1| dihydrolipoamide dehydrogenase (lpdA) [Haemophilus influenzae Rd]
>gi|1786307|gb|AAC73227.1| lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex [Escherichia coli K12]
>gi|1786495|gb|AAC73407.1| putative oxidoreductase [Escherichia coli K12]
>gi|1789915|gb|AAC76525.1| glutathione oxidoreductase [Escherichia coli K12]
>gi|1790400|gb|AAC76944.1| putative oxidoreductase [Escherichia coli K12]
--- CLUSTER 1525 ---
>gi|1573754|gb|AAC22405.1| NADH dehydrogenase (ndh) [Haemophilus influenzae Rd]
>gi|1787352|gb|AAC74193.1| respiratory NADH dehydrogenase [Escherichia coli K12]
--- CLUSTER 1526 ---
>gi|1574715|gb|AAC22813.1| thioredoxin reductase (trxB) [Haemophilus influenzae Rd]
>gi|1786823|gb|AAC73707.1| alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxides [Escherichia coli K12]
>gi|1787114|gb|AAC73974.1| thioredoxin reductase [Escherichia coli K12]
--- CLUSTER 1527 ---
>gi|1573135|gb|AAC21848.1| pyruvate formate-lyase activating enzyme (act) [Haemophilus influenzae Rd]
>gi|1790685|gb|AAC77194.1| anaerobic ribonucleotide reductase activating protein [Escherichia coli K12]
--- CLUSTER 1528 --- SPLIT INTO 1887 1888
>gi|1573135|gb|AAC21848.1| pyruvate formate-lyase activating enzyme (act) [Haemophilus influenzae Rd]
>gi|1573503|gb|AAC22178.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1787045|gb|AAC73911.1| putative pyruvate formate-lyase 2 activating enzyme [Escherichia coli K12]
>gi|1787130|gb|AAC73988.1| pyruvate formate lyase activating enzyme 1 [Escherichia coli K12]
>gi|1790389|gb|AAC76934.1| probable pyruvate formate lyase activating enzyme 2 [Escherichia coli K12]
--- CLUSTER 1529 ---
>gi|1574222|gb|AAC23034.1| anthranilate synthase component II (trpG) [Haemophilus influenzae Rd]
>gi|1786215|gb|AAC73143.1| carbamoyl-phosphate synthetase, glutamine (small) subunit [Escherichia coli K12]
--- CLUSTER 1530 ---
>gi|1574098|gb|AAC22824.1| anthranilate synthase component II (trpG) [Haemophilus influenzae Rd]
>gi|1574222|gb|AAC23034.1| anthranilate synthase component II (trpG) [Haemophilus influenzae Rd]
>gi|1787517|gb|AAC74345.1| anthranilate synthase component II, glutamine amidotransferase and phosphoribosylanthranilate transferase [Escherichia coli K12]
>gi|1789760|gb|AAC76385.1| p-aminobenzoate synthetase, component II [Escherichia coli K12]
--- CLUSTER 1531 --- SPLIT INTO 1889 1890
>gi|3212188|gb|AAC21895.1| H. influenzae predicted coding region HI0221.1 [Haemophilus influenzae Rd]
>gi|1573186|gb|AAC21891.1| GMP synthase (guaA) [Haemophilus influenzae Rd]
>gi|1788854|gb|AAC75560.1| GMP synthetase (glutamine-hydrolyzing) [Escherichia coli K12]
>gi|1789760|gb|AAC76385.1| p-aminobenzoate synthetase, component II [Escherichia coli K12]
--- CLUSTER 1532 ---
>gi|1786293|gb|AAC73215.1| GMP reductase [Escherichia coli K12]
>gi|1788855|gb|AAC75561.1| IMP dehydrogenase [Escherichia coli K12]
--- CLUSTER 1533 ---
>gi|1573185|gb|AAC21890.1| inosine-5'-monophosphate dehydrogenase (guaB) [Haemophilus influenzae Rd]
>gi|3212188|gb|AAC21895.1| H. influenzae predicted coding region HI0221.1 [Haemophilus influenzae Rd]
>gi|1788855|gb|AAC75561.1| IMP dehydrogenase [Escherichia coli K12]
--- CLUSTER 1534 ---
>gi|1573308|gb|AAC22001.1| primosomal protein N' (priA) [Haemophilus influenzae Rd]
>gi|1790370|gb|AAC76917.1| primosomal protein N'(= factor Y)(putative helicase) [Escherichia coli K12]
--- CLUSTER 1535 --- SPLIT INTO 1891 1892
>gi|1574188|gb|AAC22905.1| transcription-repair coupling factor (mfd) [Haemophilus influenzae Rd]
>gi|1574599|gb|AAC23387.1| ATP-dependent DNA helicase (recG) [Haemophilus influenzae Rd]
>gi|1787357|gb|AAC74198.1| transcription-repair coupling factor; mutation frequency decline [Escherichia coli K12]
>gi|2367254|gb|AAC76676.1| DNA helicase, resolution of Holliday junctions, branch migration [Escherichia coli K12]
--- CLUSTER 1536 ---
>gi|1573195|gb|AAC21900.1| ATP-dependent RNA helicase (deaD) [Haemophilus influenzae Rd]
>gi|1574599|gb|AAC23387.1| ATP-dependent DNA helicase (recG) [Haemophilus influenzae Rd]
--- CLUSTER 1537 --- SPLIT INTO 1893 1894
>gi|1573195|gb|AAC21900.1| ATP-dependent RNA helicase (deaD) [Haemophilus influenzae Rd]
>gi|1573394|gb|AAC22078.1| ATP-dependent RNA helicase (srmB) [Haemophilus influenzae Rd]
>gi|1573732|gb|AAC22387.1| ATP-dependent DNA helicase (recQ) [Haemophilus influenzae Rd]
>gi|1573911|gb|AAC22552.1| ATP-dependent RNA helicase (rhlB) [Haemophilus influenzae Rd]
>gi|1787016|gb|AAC73884.1| putative ATP-dependent RNA helicase [Escherichia coli K12]
>gi|1787605|gb|AAC74425.1| ATP-dependent RNA helicase [Escherichia coli K12]
>gi|1788930|gb|AAC75629.1| ATP-dependent RNA helicase [Escherichia coli K12]
>gi|1789553|gb|AAC76196.1| inducible ATP-independent RNA helicase [Escherichia coli K12]
>gi|1790214|gb|AAC76785.1| putative ATP-dependent RNA helicase [Escherichia coli K12]
>gi|2367301|gb|AAC76825.1| ATP-dependent DNA helicase [Escherichia coli K12]
--- CLUSTER 1538 ---
>gi|1573517|gb|AAC22190.1| RNA polymerase sigma-70 factor (rpoD) [Haemophilus influenzae Rd]
>gi|1788231|gb|AAC74989.1| flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons [Escherichia coli K12]
--- CLUSTER 1539 --- SPLIT INTO 1895 1896
>gi|1573235|gb|AAC21935.1| RNA polymerase sigma-32 factor (rpoH) [Haemophilus influenzae Rd]
>gi|1573517|gb|AAC22190.1| RNA polymerase sigma-70 factor (rpoD) [Haemophilus influenzae Rd]
>gi|1789098|gb|AAC75783.1| RNA polymerase, sigma S (sigma38) factor; synthesis of many growth phase related proteins [Escherichia coli K12]
>gi|1789448|gb|AAC76103.1| RNA polymerase, sigma(70) factor; regulation of proteins induced at high temperatures [Escherichia coli K12]
>gi|1789871|gb|AAC76486.1| RNA polymerase, sigma(32) factor; regulation of proteins induced at high temperatures [Escherichia coli K12]
--- CLUSTER 1540 ---
>gi|1573236|gb|AAC21936.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1574007|gb|AAC22639.1| nitrogen fixation protein (nifR3) [Haemophilus influenzae Rd]
>gi|1788462|gb|AAC75201.1| putative regulator protein [Escherichia coli K12]
>gi|1789660|gb|AAC76292.1| putative dehydrogenase [Escherichia coli K12]
--- CLUSTER 1541 ---
>gi|1573630|gb|AAC22293.1| conserved hypothetical protein [Haemophilus influenzae Rd]
>gi|1790483|gb|AAC77019.1| orf, hypothetical protein [Escherichia coli K12]
--- CLUSTER 1542 ---
>gi|1573240|gb|AAC21940.1| glutamyl-tRNA synthetase (gltX) [Haemophilus influenzae Rd]
>gi|1788743|gb|AAC75457.1| glutamate tRNA synthetase, catalytic subunit [Escherichia coli K12]
--- CLUSTER 1543 ---
>gi|1574816|gb|AAC23001.1| glutaminyl-tRNA synthetase (glnS) [Haemophilus influenzae Rd]
>gi|1786895|gb|AAC73774.1| glutamine tRNA synthetase [Escherichia coli K12]
--- CLUSTER 1544 ---
>gi|1573240|gb|AAC21940.1| glutamyl-tRNA synthetase (gltX) [Haemophilus influenzae Rd]
>gi|1786895|gb|AAC73774.1| glutamine tRNA synthetase [Escherichia coli K12]
--- CLUSTER 1545 ---
>gi|1573240|gb|AAC21940.1| glutamyl-tRNA synthetase (gltX) [Haemophilus influenzae Rd]
>gi|1786337|gb|AAC73255.1| putative tRNA synthetase [Escherichia coli K12]
--- CLUSTER 1546 ---
>gi|1573088|gb|AAC21806.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
>gi|1573277|gb|AAC21973.1| conserved hypothetical transmembrane protein [Haemophilus influenzae Rd]
--- CLUSTER 1547 ---
>gi|1786549|gb|AAC73456.1| putative transport protein [Escherichia coli K12]
>gi|1788092|gb|AAC74861.1| putative amino acid/amine transport protein [Escherichia coli K12]
--- CLUSTER 1548 ---
>gi|1787068|gb|AAC73932.1| putative DEOR-type transcriptional regulator [Escherichia coli K12]
>gi|1788662|gb|AAC75382.1| putative transport protein [Escherichia coli K12]
--- CLUSTER 1549 ---
>gi|1786549|gb|AAC73456.1| putative transport protein [Escherichia coli K12]
>gi|1786806|gb|AAC73692.1| putative transport [Escherichia coli K12]
--- CLUSTER 1550 --- SPLIT INTO 18