| Date | Assignment | Due |
| Jan. 7 | Read Ch. 2, 4, 5, and 12 in Gibas and Jambeck | before the lab session on Jan 10 |
| Jan. 14 |
Write programs, getseqs.pl, and getseqs.pl with -gbac options details about hw2 |
before the lab session on Jan 17 |
| Jan. 17 | Write a program, perl translate.pl -seqs seqid-file -f dna-file | before the lab session on Jan 24 |
| Feb. 1 |
Write a program, perl get-block.pl -s scorefile -w min -M minscore -r score
scorefile is a filename for the scroing matrix and all others, min, minscore, and score, are numbers. look at here |
before the lab session on Feb. 7 |
| Feb. 4 |
Write a program that summarizes a FASTA search result and
another program that summarize .ptt file.
look at ps or pdf for more detail. |
before the lab session on Feb. 14 |
| Mar. 18 | Do the Protocol 1 on page 100 (Higgis and Talyor) and send me the seqs, blocks, and MEME search result. | before the class on Mar. 25 |