| Bioinformatics Introduction | Jan. 7 | postscript | |
| DNA sequencing (an OLD method) | Jan. 7 | from my thesis | |
| Bioinformatics in terms of a genome project | Jan. 9 | postscript | |
| UNIX and Perl | Jan. 10 | postscript | |
| UNIX and Perl | Jan. 14 | ||
| Bioinformatics in terms of a genome project | Jan. 16 | ||
| GJ, Ch 6 (Biological Research on the Web) | Jan. 23 | postscript | |
| GJ, Ch 7 (Pairwise Sequence Comparison) | Jan. 28 | postscript | |
| Jan. 28 | read-mat-array.pl read-mat-hash.pl | BLOSUM62 | |
| GJ, Ch 8 (Multiple Seq. Alignment, Trees) | Jan. 30 | postscript | |
| Quiz I | Feb. 4 | postscript | |
| GCG and Emboss (Sue Olson) | Feb. 6 | ||
| More sample Perl programs | Feb. 11 | here | |
| sample Perl programs for graphs | Feb. 13 | here | perl package install |
| GJ. Ch. 11 (Genomics and Proteomics) | Feb. 13 | ps | |
| GJ. Ch. 11 (Genomics and Proteomics) | Feb. 18 | ps | |
| Database Selection | Feb. 20 | NAR journal 2002 database list | link to presentations |
| HT, Ch 8 (Sequence comparison) | Feb. 25, 27 Mar. 4, 6 |
ps | |
| HT, Ch 5 (Family-based homolgy detection) | Mar. 18, 20 | ps | |
| Guest lecture | March 25 | John Calley from Lilly | |
| Guest lecture | March 27 | Paul Purdom from IU CS | |
| HT, Ch 3 (Multiple sequence alignment) | April 1, 3 | ps cog0551 | |
| HT, Ch 4 (Hidden Markov Model) | April 8, 10 | ps | |
| Two chapters from Computational Methods in MOlecular Biolgy | April 17, 22 | ps | |
| HT, Ch 7 (Pattern Discovery) | April 24 | ps |