[ Fold Library: v.1.53.8261 ] [ Sequence Database: v.2003.4.5 ] [ 3D-PSSM Binary: v.2.2 ] [ Server Version: v.2.6.0 ]
Results for _132L___LYSOZYME_E_C_3_2_1_17_

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Please Note: 3D-PSSM is for academic use only

Please Cite: Enhanced Genome Annotation using Structural Profiles in the Program 3D-PSSM.
Kelley LA, MacCallum RM & Sternberg MJE (2000). J. Mol. Biol. 299(2), 499-520.

Sidechains, where applicable, have been modelled by SCWRL

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Job Submitted on Sun Apr 20 18:41:45 BST 2003


Description: _132L___LYSOZYME_E_C_3_2_1_17_
Remote Host: d-93-86.dhcp-156-56.indiana.edu
Remote Address: 156.56.93.86
E-mail Address: kannaiah@indiana.edu
Input Format: single
Query Length: 129
Global Local: yes
Low-complexity Filter: yes
PROSITE motifs
NONE                                                  

Query Functional Keywords Weight
Bacteriolytic enzyme 61
Egg white 44
Glycosidase 43
Hydrolase 35
Signal 30
Stomach 30
Digestion 24
Milk 18
Multigene family 13
Allergen 11

E-value Key (% Certainty)
  95%     90%     80%     70%     50%  
HELP - Interpreting your Results

Query PSSM

View Alignment Fold Library Template Length Model PSSM E_value SAWTED E-value Biotext Class Fold SuperFamily Family Protein                                                                       Species ID Region CS PSSM Type
View Alignment d3lzt__ 100%i.d. 129 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View Rasmol Model with Sidechains Chime Model with Sidechains
 6.43e-06 0.00238
lysozymes,lysozyme,peptide-substituted,transglycosylation,immunoagents  * 		0.28 Egg white, Bacteriolytic enzyme, Digestion, Glycosidase, Hydrolase, Multigene family, Milk, Signal, Stomach, Alpha and beta proteins (a+b) Lysozyme-like Lysozyme-like C-type lysozyme Lysozyme Chicken (Gallus gallus) 3lzt - 0.500 R1D
View Alignment d1jsf__ 60%i.d. 130 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View Rasmol Model with Sidechains Chime Model with Sidechains
 0.0027 0.000327
lysozymes,lysozyme,peptide-substituted,transglycosylation,immunoagents  * 		0.26 Egg white, Bacteriolytic enzyme, Digestion, Glycosidase, Hydrolase, Multigene family, Milk, Signal, Stomach, Alpha and beta proteins (a+b) Lysozyme-like Lysozyme-like C-type lysozyme Lysozyme Human (Homo sapiens) 1jsf - 0.500 R1D
View Alignment d1lmq__ 60%i.d. 129 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View Rasmol Model with Sidechains Chime Model with Sidechains
 0.0027 0.00173
lysozymes,immunoagents,bacteriolytic,monocyte,macrophage  * 		0.27 Egg white, Bacteriolytic enzyme, Digestion, Glycosidase, Hydrolase, Multigene family, Milk, Signal, Stomach, Alpha and beta proteins (a+b) Lysozyme-like Lysozyme-like C-type lysozyme Lysozyme Rainbow trout (Oncorhynchus mykiss) 1lmq - 0.500 R1D
View Alignment d1qqya_ 53%i.d. 130 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View Rasmol Model with Sidechains Chime Model with Sidechains
 0.0027 0.000503
lysozyme,lysozymes,peptide-substituted,transglycosylation,immunoagents 		0.27 Egg white, Bacteriolytic enzyme, Digestion, Glycosidase, Hydrolase, Multigene family, Milk, Signal, Stomach, Alpha and beta proteins (a+b) Lysozyme-like Lysozyme-like C-type lysozyme Lysozyme Dog (Canis familiaris), milk 1qqy a: 0.500 R1D
View Alignment d1jug__ 54%i.d. 125 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View Rasmol Model with Sidechains Chime Model with Sidechains
 0.0027 0.000368
lysozymes,lysozyme,peptide-substituted,transglycosylation,immunoagents 		0.24 Egg white, Bacteriolytic enzyme, Digestion, Glycosidase, Hydrolase, Multigene family, Milk, Signal, Stomach, Alpha and beta proteins (a+b) Lysozyme-like Lysozyme-like C-type lysozyme Lysozyme Australian echidna (Tachyglossus aculeatus) 1jug - 0.500 R1D
View Alignment d1b9oa_ 40%i.d. 123 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 0.0027 0.593
22,glycosyl,hydrolases,tissues,SIGNAL 		0.24 Egg white, Bacteriolytic enzyme, Digestion, Glycosidase, Allergen, Hydrolase, Multigene family, Milk, Signal, Stomach, Alpha and beta proteins (a+b) Lysozyme-like Lysozyme-like C-type lysozyme alpha-Lactalbumin Human (Homo sapiens) 1b9o a: 0.500 1D
View Alignment c1gd6a_ 45%i.d. 119 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 0.0027 0.00173
lysozymes,immunoagents,bacteriolytic,monocyte,macrophage 		0.27 Egg white, Bacteriolytic enzyme, Digestion, Glycosidase, Hydrolase, Multigene family, Milk, Signal, Stomach, Alpha and beta proteins (a+b) Lysozyme-like Lysozyme-like homol. to d1lmq__ - - 1gd6 a 0.000 1D
View Alignment d1hfx__ 33%i.d. 123 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 0.0027 0.593
22,glycosyl,hydrolases,tissues,SIGNAL 		0.24 Egg white, Bacteriolytic enzyme, Digestion, Glycosidase, Hydrolase, Multigene family, Milk, Signal, Stomach, Alpha and beta proteins (a+b) Lysozyme-like Lysozyme-like C-type lysozyme alpha-Lactalbumin Guinea pig (Gavia porcellus) 1hfx - 0.500 1D
View Alignment c1jnca_ 35%i.d. 123 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 0.0027 0.593
22,glycosyl,hydrolases,tissues,SIGNAL 		0.21 Egg white, Bacteriolytic enzyme, Digestion, Glycosidase, Hydrolase, Multigene family, Milk, Signal, Stomach, Alpha and beta proteins (a+b) Lysozyme-like Lysozyme-like homol. to d1lmq__ - - 1jnc a 0.000 1D
View Alignment d1qsaa2 12%i.d. 168 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 0.0144 0.571
n-acetylmuramic,GLYCOSIDASE,associated,acid,cell 		0.27 Egg white, Bacteriolytic enzyme, Glycosidase, Hydrolase, Multigene family, Signal, Alpha and beta proteins (a+b) Lysozyme-like Lysozyme-like Bacterial muramidase, catalytic domain 70 kDa soluble lytic transglycosylase, SLT70 Escherichia coli 1qsa a:451-618 0.500 3D
View Alignment d153l__ 16%i.d. 185 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 2.28 0.0136
lysozyme,n-acetylmuramic,BACTERIOLYTIC,EGG,WHITE 		0.11 Hydrolase, Egg white, Bacteriolytic enzyme, Signal, Glycosidase, Alpha and beta proteins (a+b) Lysozyme-like Lysozyme-like G-type lysozyme Lysozyme Goose (Anser anser anser) 153l - 0.500 3D
View Alignment d1d2da_ 11%i.d. 56 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 7.4 0.807
ENZYME,shown,3 		1.00 All alpha proteins S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain a tRNA synthase domain Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element Chinese hamster (Cricetulus griseus) 1d2d a: 0.791 R1D
View Alignment d1qo6a1 22%i.d. 60 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 9.05 0.897
3,cell,2,SIGNAL 		0.88 Hydrolase, Signal, Small proteins Kringle-like Kringle-like Fibronectin type II module Fibronectin Human (Homo sapiens) 1qo6 a:42-101 0.500 R1D
View Alignment d3proc1 25%i.d. 80 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 10.2 0.82
hydrolysis,HYDROLASE,SIGNAL 		0.76 Hydrolase, Signal, Alpha and beta proteins (a+b) Alpha-lytic protease prodomain-like Alpha-lytic protease prodomain Alpha-lytic protease prodomain Alpha-lytic protease prodomain Lysobacter enzymogenes 3pro c:6-85 0.000 3D
View Alignment d1awcb_ 14%i.d. 153 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 10.9 0.815
capable 		0.89 Hydrolase, Multigene family, Signal, All alpha proteins alpha-alpha superhelix Ankyrin repeat Ankyrin repeat GA bindinig protein (GABP) beta 1 Mouse (Mus musculus) 1awc b: 0.000 3D
View Alignment d1vapa_ 15%i.d. 123 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 11.4 0.786
hydrolysis,acid,HYDROLASE 		0.82 Hydrolase, Multigene family, Signal, All alpha proteins Phospholipase A2, PLA2 Phospholipase A2, PLA2 Vertebrate phospholipase A2 Snake phospholipase A2 Eastern cottonmouth snake (Agkistridon piscivorus) 1vap a: 0.500 R1D
View Alignment d1bx7__ 20%i.d. 51 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 13.2 0.882
acts 		0.94 Signal, Small proteins Knottins (small inhibitors, toxins, lectins) Leech antihemostatic proteins Huristasin-like Hirustasin Medicinal leech (Hirudo medicinalis) 1bx7 - 0.500 1D
View Alignment d1b43a1 12%i.d. 120 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 13.4 0.971
HYDROLASE 		0.88 Hydrolase, All alpha proteins SAM domain-like 5' to 3' exonuclease, C-terminal subdomain 5' to 3' exonuclease, C-terminal subdomain Fen-1 nuclease Pyrococcus furiosus 1b43 a:220-339 0.953 R1D
View Alignment c1daqa_ 27%i.d. 71 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 14 0.732
glycosyl,GLYCOSIDASE,hydrolases,HYDROLASE,SIGNAL 		0.61 Hydrolase, Signal, Glycosidase, not in SCOP 1.53 PDB header: hydrolase. Chain: A: PDB Molecule:endoglucanase ss;. . PDBTitle: solution structure of the type i dockerin domain from the2 clostridium thermocellum cellulosome (minimized average3 structure) . - 1daq a 0.000 R1D
View Alignment d2occg1 14%i.d. 84 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 14.2 0.81
c,2 		1.00 Membrane and cell surface proteins and peptides Membrane all-alpha Membrane all-alpha Membrane all-alpha Cytochrome c oxidase Bovine (Bos taurus) 2occ g: 0.500 1D